TCONS_00051090 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051090
Unique NameTCONS_00051090
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length697

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051090 ID=TCONS_00051090|Name=TCONS_00051090|organism=Clytia hemisphaerica|type=transcript|length=697bp
CACATGAAAACACTCTTAAAAAGTATATCCATTTTACAACACCCCAAAGT
GGCTTCAATCCAGATGTTATAGCCCAGCTAATAGAAGATTCAAAAGTCGA
CACCttttgatgaaatcaaaataaaatccgGTCTCGTATACAAAAAAGGT
TCAGGAGAAATTATAGGATTTACAAAGATGGGGGACCTGAACGAATAAAT
CGAACGATTCATGCTAACGTGTGACAAAGATGACGATAGTGATAGAAGTC
TTGCAACATACGCAAATGTATTTATGGTTCGCGGAATATGCTCAAACTTT
TGTACAACTTTTGGCTATCATGCTGGTATTGGATTCACTGGTGATCAATT
TAACAGCTTGGTGTGGGAAGCAACTCGAGTACTCGAAAGTATTGGATTTT
ATGTGAGAGCATGGGTATGTGACGGTGCAAGCACAAATCGAAAGGTGTTC
AAAATCAATTCCCAGTTTTCTGATTATTTGACCCAGATCGGAAGATCTAC
TTCTTCTCTGATGCACCCCATCTCGTCAAAATAACTCGTAACAATCTCGA
AAACTCATTGGCTAACAAGAATACAAGAAATTGACATGTAATGTCTATTA
ATTATCATTTCAAATGATTACAAACCAATGACTCTTTATAAGCATTTTCA
TATTCCCAGTTATATTTATAATTTATACTCCTCAAACATATGACTAG
Run BLAST on NCBI

protein sequence of TCONS_00051090-protein

>TCONS_00051090-protein ID=TCONS_00051090-protein|Name=TCONS_00051090-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MLTCDKDDDSDRSLATYANVFMVRGICSNFCTTFGYHAGIGFTGDQFNSL
VWEATRVLESIGFYVRAWVCDGASTNRKVFKINSQFSDYLTQIGRSTSSL
MHPISSK
Run BLAST on NCBI

transcript from alignment at scaffold_193:173487..174183

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051090 ID=TCONS_00051090|Name=TCONS_00051090|organism=Clytia hemisphaerica|type=transcript|length=697bp|location=Sequence derived from alignment at scaffold_193:173487..174183 (Clytia hemisphaerica)
CTAGTCATATGTTTGAGGAGTATAAATTATAAATATAACTGGGAATATGA
AAATGCTTATAAAGAGTCATTGGTTTGTAATCATTTGAAATGATAATTAA
TAGACATTACATGTCAATTTCTTGTATTCTTGTTAGCCAATGAGTTTTCG
AGATTGTTACGAGTTATTTTGACGAGATGGGGTGCATCAGAGAAGAAGTA
GATCTTCCGATCTGGGTCAAATAATCAGAAAACTGGGAATTGATTTTGAA
CACCTTTCGATTTGTGCTTGCACCGTCACATACCCATGCTCTCACATAAA
ATCCAATACTTTCGAGTACTCGAGTTGCTTCCCACACCAAGCTGTTAAAT
TGATCACCAGTGAATCCAATACCAGCATGATAGCCAAAAGTTGTACAAAA
GTTTGAGCATATTCCGCGAACCATAAATACATTTGCGTATGTTGCAAGAC
TTCTATCACTATCGTCATCTTTGTCACACGTTAGCATGAATCGTTCGATT
TATTCGTTCAGGTCCCCCATCTTTGTAAATCCTATAATTTCTCCTGAACC
TTTTTTGTATACGAGACcggattttattttgatttcatcaaaaGGTGTCG
ACTTTTGAATCTTCTATTAGCTGGGCTATAACATCTGGATTGAAGCCACT
TTGGGGTGTTGTAAAATGGATATACTTTTTAAGAGTGTTTTCATGTG

Coding sequence (CDS) from alignment at scaffold_193:173487..174183

>TCONS_00051090 ID=TCONS_00051090|Name=TCONS_00051090|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at scaffold_193:173487..174183 (Clytia hemisphaerica)
TTATTTTGACGAGATGGGGTGCATCAGAGAAGAAGTAGATCTTCCGATCT
GGGTCAAATAATCAGAAAACTGGGAATTGATTTTGAACACCTTTCGATTT
GTGCTTGCACCGTCACATACCCATGCTCTCACATAAAATCCAATACTTTC
GAGTACTCGAGTTGCTTCCCACACCAAGCTGTTAAATTGATCACCAGTGA
ATCCAATACCAGCATGATAGCCAAAAGTTGTACAAAAGTTTGAGCATATT
CCGCGAACCATAAATACATTTGCGTATGTTGCAAGACTTCTATCACTATC
GTCATCTTTGTCACACGTTAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032383XLOC_032383Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051090-proteinTCONS_00051090-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051090-exon-scaffold_193-1491911889:173487..174183TCONS_00051090-exon-scaffold_193-1491911889:173487..174183Clytia hemisphaericaexon
TCONS_00051090-exon-scaffold_193-1510915933:173487..174183TCONS_00051090-exon-scaffold_193-1510915933:173487..174183Clytia hemisphaericaexon
TCONS_00051090-exon-scaffold_193-1575043694:173487..174183TCONS_00051090-exon-scaffold_193-1575043694:173487..174183Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_193supercontigscaffold_193:173487..174183 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.082315	0.0805324	0.294121	0.0774728	0.654274	0.52502	0.306316	0.303537	0.220965	0.193672	0.145052	0.451914	0.24769	0.443015	0.873213	0.7272	0.695538	0.889571	0.632617	0.205712	0.333427	0.22735	0.0780551	0	0.0996865	0.106388	0.161383	0.246636
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051090 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top