TCONS_00051093 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051093
Unique NameTCONS_00051093
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length292

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051093 ID=TCONS_00051093|Name=TCONS_00051093|organism=Clytia hemisphaerica|type=transcript|length=292bp
TCTTGTTAGACGATAACATTCGGtaacatttttgtgtaacattttctaaa
aatagcaaatgtTGTACAAAATGTTACCGTGTAACATCGATTAACATTCA
GAAACATTCAAATGTTAACGAATGTTACGCGCAGAtagcaaatcaaaaaa
aaaatgatttgctCTCATGGTTAACATTTTGAATCAAAGGATGCCGCcat
ttaaagggaatttaaaaggATAGTTCAAGTGCGCACGTGTTTTTTCGccg
atttttctctcttttttaataaaaaaaatcaaatgttacaCA
Run BLAST on NCBI

transcript from alignment at scaffold_193:200271..200562

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051093 ID=TCONS_00051093|Name=TCONS_00051093|organism=Clytia hemisphaerica|type=transcript|length=292bp|location=Sequence derived from alignment at scaffold_193:200271..200562 (Clytia hemisphaerica)
TGtgtaacatttgattttttttattaaaaaagagagaaaaatcggCGAAA
AAACACGTGCGCACTTGAACTATccttttaaattccctttaaatgGCGGC
ATCCTTTGATTCAAAATGTTAACCATGAGagcaaatcattttttttttga
tttgctaTCTGCGCGTAACATTCGTTAACATTTGAATGTTTCTGAATGTT
AATCGATGTTACACGGTAACATTTTGTACAacatttgctatttttagaaa
atgttacacaaaaatgttaCCGAATGTTATCGTCTAACAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032386XLOC_032386Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051093-exon-scaffold_193-1491911889:200271..200562TCONS_00051093-exon-scaffold_193-1491911889:200271..200562Clytia hemisphaericaexon
TCONS_00051093-exon-scaffold_193-1510915933:200271..200562TCONS_00051093-exon-scaffold_193-1510915933:200271..200562Clytia hemisphaericaexon
TCONS_00051093-exon-scaffold_193-1575043694:200271..200562TCONS_00051093-exon-scaffold_193-1575043694:200271..200562Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_193supercontigscaffold_193:200271..200562 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.8682	20.3714	16.7292	7.66973	8.12889	2.27003	11.0463	21.9268	9.02953	11.2207	2.05126	4.63801	2.1501	2.32882	5.29687	3.63725	3.38096	3.30325	1.49835	0.665339	5.99364	7.52523	7.074	10.4213	1.37226	0.816471	8.94989	9.80877	12.535	13.974
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051093 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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