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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051097 ID=TCONS_00051097|Name=TCONS_00051097|organism=Clytia hemisphaerica|type=transcript|length=996bp
CAAGATTGAGCAAACCGAAGCAACCTCTGGTAAAATATGAATCAGCCTCA
CAGTGTAAATGATGGAAATCAGAATGAAGTTATCAAAAGATTAAAAGAAG
ATCTTCaccaaaaagaaataaaaattctaACTTTGGAGAAGAATATTGAA
ATATTGGAATTGAGACGAGAAAACGAAACGCTTAAGCATAAAATGGAGCT
TATGGAGCAACAAAGCACCAATGCAAAACGAGATGAAGAGGAACAGGAAG
GACCTGGAAATAAAGAAGTGATCTTAGATGACCAAAGATACATAACAATC
AAAGAGAGAATTTCTTGGGGTGTTAACCGTTATTTTCAAGGAGAAAGCCA
GCGTTGGTCAAATTTGTATGAGTCGTATGGAGAATGGTATCAAAATATAA
AGAAGCTGACCGCAGACAGAGATTTGTATTCATTTGAAAATTACTATTTA
GTAAGAAAAAACGATATTGGGGAAAGTAGATTAGGCGTATCCTTTATATC
GAAAAGAGAAGGCGCTAAATGCCACGAATATGGCAGTACTATTGTCGTAA
CTGGCTTAGATTGTGTGTTATGGGAAACAGCGTCTATCGTCATACTTCAT
CCATTTAATCCAGCAGAATGCGTCGAAATGCAAAAATGGAAACGGGAAAA
AGATATGTATGAACAATGGCAGTACTATGGAGGTCTTGACTTGTCAGTTG
ATAAGTCGATCACTCTGCTCGTCCTTACTCAAAAAACATTATAGTAGTCC
TTTGAAAATAATGGAAAATGTCCAAGAGACTCAattgatttgaattttaa
taaatgCACTATTCTACGATATGGAGGTTCTGTAAATTCAACCTTGTTAT
ATACCGACAGATTGTAGAACAAGTGAATGTTATTTTGGGGAGTTTCtcaa
catcgaccagaaatagCGACCACGActagcgaccacgaccggcgaccaga
taaactttggttatcgagtttacctgctctctccaccgtagagaac Run BLAST on NCBI protein sequence of TCONS_00051097-protein >TCONS_00051097-protein ID=TCONS_00051097-protein|Name=TCONS_00051097-protein|organism=Clytia hemisphaerica|type=polypeptide|length=235bp
MNQPHSVNDGNQNEVIKRLKEDLHQKEIKILTLEKNIEILELRRENETLK
HKMELMEQQSTNAKRDEEEQEGPGNKEVILDDQRYITIKERISWGVNRYF
QGESQRWSNLYESYGEWYQNIKKLTADRDLYSFENYYLVRKNDIGESRLG
VSFISKREGAKCHEYGSTIVVTGLDCVLWETASIVILHPFNPAECVEMQK
WKREKDMYEQWQYYGGLDLSVDKSITLLVLTQKTL Run BLAST on NCBI transcript from alignment at scaffold_193:261660..262655 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051097 ID=TCONS_00051097|Name=TCONS_00051097|organism=Clytia hemisphaerica|type=transcript|length=996bp|location=Sequence derived from alignment at scaffold_193:261660..262655 (Clytia hemisphaerica)
gttctctacggtggagagagcaggtaaactcgataaccaaagtttatctg
gtcgccggtcgtggtcgctagTCGTGGTCGctatttctggtcgatgttga
GAAACTCCCCAAAATAACATTCACTTGTTCTACAATCTGTCGGTATATAA
CAAGGTTGAATTTACAGAACCTCCATATCGTAGAATAGTGcatttattaa
aattcaaatcaatTGAGTCTCTTGGACATTTTCCATTATTTTCAAAGGAC
TACTATAATGTTTTTTGAGTAAGGACGAGCAGAGTGATCGACTTATCAAC
TGACAAGTCAAGACCTCCATAGTACTGCCATTGTTCATACATATCTTTTT
CCCGTTTCCATTTTTGCATTTCGACGCATTCTGCTGGATTAAATGGATGA
AGTATGACGATAGACGCTGTTTCCCATAACACACAATCTAAGCCAGTTAC
GACAATAGTACTGCCATATTCGTGGCATTTAGCGCCTTCTCTTTTCGATA
TAAAGGATACGCCTAATCTACTTTCCCCAATATCGTTTTTTCTTACTAAA
TAGTAATTTTCAAATGAATACAAATCTCTGTCTGCGGTCAGCTTCTTTAT
ATTTTGATACCATTCTCCATACGACTCATACAAATTTGACCAACGCTGGC
TTTCTCCTTGAAAATAACGGTTAACACCCCAAGAAATTCTCTCTTTGATT
GTTATGTATCTTTGGTCATCTAAGATCACTTCTTTATTTCCAGGTCCTTC
CTGTTCCTCTTCATCTCGTTTTGCATTGGTGCTTTGTTGCTCCATAAGCT
CCATTTTATGCTTAAGCGTTTCGTTTTCTCGTCTCAATTCCAATATTTCA
ATATTCTTCTCCAAAGTtagaatttttatttctttttggtGAAGATCTTC
TTTTAATCTTTTGATAACTTCATTCTGATTTCCATCATTTACACTGTGAG
GCTGATTCATATTTTACCAGAGGTTGCTTCGGTTTGCTCAATCTTG Coding sequence (CDS) from alignment at scaffold_193:261660..262655 >TCONS_00051097 ID=TCONS_00051097|Name=TCONS_00051097|organism=Clytia hemisphaerica|type=CDS|length=708bp|location=Sequence derived from alignment at scaffold_193:261660..262655 (Clytia hemisphaerica)
CTATAATGTTTTTTGAGTAAGGACGAGCAGAGTGATCGACTTATCAACTG
ACAAGTCAAGACCTCCATAGTACTGCCATTGTTCATACATATCTTTTTCC
CGTTTCCATTTTTGCATTTCGACGCATTCTGCTGGATTAAATGGATGAAG
TATGACGATAGACGCTGTTTCCCATAACACACAATCTAAGCCAGTTACGA
CAATAGTACTGCCATATTCGTGGCATTTAGCGCCTTCTCTTTTCGATATA
AAGGATACGCCTAATCTACTTTCCCCAATATCGTTTTTTCTTACTAAATA
GTAATTTTCAAATGAATACAAATCTCTGTCTGCGGTCAGCTTCTTTATAT
TTTGATACCATTCTCCATACGACTCATACAAATTTGACCAACGCTGGCTT
TCTCCTTGAAAATAACGGTTAACACCCCAAGAAATTCTCTCTTTGATTGT
TATGTATCTTTGGTCATCTAAGATCACTTCTTTATTTCCAGGTCCTTCCT
GTTCCTCTTCATCTCGTTTTGCATTGGTGCTTTGTTGCTCCATAAGCTCC
ATTTTATGCTTAAGCGTTTCGTTTTCTCGTCTCAATTCCAATATTTCAAT
ATTCTTCTCCAAAGTtagaatttttatttctttttggtGAAGATCTTCTT
TTAATCTTTTGATAACTTCATTCTGATTTCCATCATTTACACTGTGAGGC
TGATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051097-exon-scaffold_193-1491911889:261660..262655 | TCONS_00051097-exon-scaffold_193-1491911889:261660..262655 | Clytia hemisphaerica | exon |
| TCONS_00051097-exon-scaffold_193-1510915933:261660..262655 | TCONS_00051097-exon-scaffold_193-1510915933:261660..262655 | Clytia hemisphaerica | exon |
| TCONS_00051097-exon-scaffold_193-1575043694:261660..262655 | TCONS_00051097-exon-scaffold_193-1575043694:261660..262655 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_193 | supercontig | scaffold_193:261660..262655 . |
Blast
The following BLAST results are available for this feature:
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