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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051100 ID=TCONS_00051100|Name=TCONS_00051100|organism=Clytia hemisphaerica|type=transcript|length=1993bp
agccggcacacaacgtcaaaacaacgtccatttgacattcataacgtcca
aataacgttacttgaacgttaaaacaacgttgtgtgccagctgggttgat
ATTTATTTCCTCTATCGGGCTGTCAGCGATAAAATGTTATGGTGCAATTC
TAAAACTACATTAGTTAGGATTTcattgttaatttcattcctcATATTTG
TTGCTTTCCTAGATTTGCAATAGTCTAATGGATCTAGTTGGACCAATATT
TGTGGTGCAGTTTAACTACGTCaacatttctttttcaatttcctCTTCAT
GATTCGGTGCTTTCCTTTGTAACAGCCGATCCTTAAGAGTCCTCTTCTTT
TTCGGCACCATCGGTACACTCTCTTTACGCCAGCGTCGTTCCATCTCTTC
ATCACTTATAAACAAATTAATACAAGCTTTCCTCAATGCTGTTAAACGTG
CAACAAATACTATAGTTTTGCAGACAGAGCTGATGATACATAGTATAGCT
ATACACTCTTGTAGTAAGTTGATAGTGTAACAACCATATCGTCCTTTCGA
TAAATGGATAGTTAAACTTATAATGACAACTGGTATATAACATAGGAAGA
AGATGAGCATCATGTAAAAGAAAGTGTCTGTAGCTCGCTTCTCCATTAGA
TAAACCTGGTAATCTTCGTCCAGCTTCTGTGCTGAGGTTATTGAAGTGAT
GCTGTCCTTTTTGGATCGTGTAAATTTACGCTTTATACTCATAGGAATGG
ACGGCCGAGACGAGGACCCTCCTGAGTCGCTGGAGACGTATCTTATAGTG
CCAGGTCCCTGGTCTTCGATTTCATCCGCATCGTTTATTTCGACTTCTGG
ATCTTTTGGCGTTGAATGCGACCTAATGAAAGCGCGACGTAGTTGAGCTC
TGTAGAACATATATGTTATGAACATCATAACTGCTGTGACTAGGACAGCC
GATAGCGATATAATTGTCAGGAACAATGAGTAATCGAGAATGAAATAGAT
CGGCGATAGACCACCTGTTACGACCCACACAGCTAATAAGCTTGCTATGA
AATTTATCTTCTTCATGACTCGGTATTGTGATGAAAACTTTAAACTAATC
ATTCGGTCAATACTGAGCACAGTGATTGTTAAAACTGAAACCATGGCTAA
TGTGAATAAACCAAAATGGAATAACGTGTCCACTGTCCCGTTTACGGGCT
CTTCACGTATCTCACGCACGTGAATGTTAATCGATAAGGGACATAATATA
GCACCTATTAGAAAATCAGCAGCAGTCGTgttgaaaatgatgaaataGAA
ATTACTATGAAATTTTTTGTTCTTGATGATCGCAACGAGTACGACTCCGT
TTAACGGCACGGATATTATGGTAAGAAGTATTGAAAGTGTGCATAAGATG
ATTGGGAACACTTGATCGGTAACTTCACAAGGTATTTGGCCAGCCATGTT
GATGTCGAATCCTGGGATATATCCGATATTAACAgtaactttttttattc
tttccgCAGCATGTAGTtactaaaaacattttttgttttcttttgtattc
GAACTGGAAACGAATCAGTAACATTCCATTCTTCCCAGTTACGGATGACT
AGAAGAGTAGTGCTGCTTAAAACAAGGTATataaaagttgaattttcacT
CCATTTGCTTACATTTAAACTTTTAAGGTTAACCAAGCCATATATGATTT
TGAACGCGTTTGTTGATTTAGGTCAACTTATGTAAATATCAGcatcaaaa
tttggaatttttataAATGATAGTTTTTTGTTCTTTCATATATTATGTCC
ATCAATATGTTTTGACATTTAGATatccaaaaatatatatcttctctaat
aaaaatatattctatataatattttctgattccccTCTCTGCGATTCTTG
TCTactacttttttgattttttttacaatatttccTTAATCTTTGCttct
aaatctttcttttctttttctctttttctcgcACATATTTTTT Run BLAST on NCBI protein sequence of TCONS_00051100-protein >TCONS_00051100-protein ID=TCONS_00051100-protein|Name=TCONS_00051100-protein|organism=Clytia hemisphaerica|type=polypeptide|length=393bp
MAGQIPCEVTDQVFPIILCTLSILLTIISVPLNGVVLVAIIKNKKFHSNF
YFIIFNTTAADFLIGAILCPLSINIHVREIREEPVNGTVDTLFHFGLFTL
AMVSVLTITVLSIDRMISLKFSSQYRVMKKINFIASLLAVWVVTGGLSPI
YFILDYSLFLTIISLSAVLVTAVMMFITYMFYRAQLRRAFIRSHSTPKDP
EVEINDADEIEDQGPGTIRYVSSDSGGSSSRPSIPMSIKRKFTRSKKDSI
TSITSAQKLDEDYQVYLMEKRATDTFFYMMLIFFLCYIPVVIISLTIHLS
KGRYGCYTINLLQECIAILCIISSVCKTIVFVARLTALRKACINLFISDE
EMERRWRKESVPMVPKKKRTLKDRLLQRKAPNHEEEIEKEMLT Run BLAST on NCBI transcript from alignment at scaffold_193:290686..292678 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051100 ID=TCONS_00051100|Name=TCONS_00051100|organism=Clytia hemisphaerica|type=transcript|length=1993bp|location=Sequence derived from alignment at scaffold_193:290686..292678 (Clytia hemisphaerica)
AAAAAATATGTgcgagaaaaagagaaaaagaaaagaaagatttagaaGCA
AAGATTAAggaaatattgtaaaaaaaatcaaaaaagtagtAGACAAGAAT
CGCAGAGAggggaatcagaaaatattatatagaatatatttttattagag
aagatatatatttttggatATCTAAATGTCAAAACATATTGATGGACATA
ATATATGAAAGAACAAAAAACTATCATTtataaaaattccaaattttgat
gCTGATATTTACATAAGTTGACCTAAATCAACAAACGCGTTCAAAATCAT
ATATGGCTTGGTTAACCTTAAAAGTTTAAATGTAAGCAAATGGAgtgaaa
attcaacttttatATACCTTGTTTTAAGCAGCACTACTCTTCTAGTCATC
CGTAACTGGGAAGAATGGAATGTTACTGATTCGTTTCCAGTTCgaataca
aaagaaaacaaaaaatgtttttagtaACTACATGCTGcggaaagaataaa
aaaagttacTGTTAATATCGGATATATCCCAGGATTCGACATCAACATGG
CTGGCCAAATACCTTGTGAAGTTACCGATCAAGTGTTCCCAATCATCTTA
TGCACACTTTCAATACTTCTTACCATAATATCCGTGCCGTTAAACGGAGT
CGTACTCGTTGCGATCATCAAGAACAAAAAATTTCATAGTAATTTCtatt
tcatcattttcaacACGACTGCTGCTGATTTTCTAATAGGTGCTATATTA
TGTCCCTTATCGATTAACATTCACGTGCGTGAGATACGTGAAGAGCCCGT
AAACGGGACAGTGGACACGTTATTCCATTTTGGTTTATTCACATTAGCCA
TGGTTTCAGTTTTAACAATCACTGTGCTCAGTATTGACCGAATGATTAGT
TTAAAGTTTTCATCACAATACCGAGTCATGAAGAAGATAAATTTCATAGC
AAGCTTATTAGCTGTGTGGGTCGTAACAGGTGGTCTATCGCCGATCTATT
TCATTCTCGATTACTCATTGTTCCTGACAATTATATCGCTATCGGCTGTC
CTAGTCACAGCAGTTATGATGTTCATAACATATATGTTCTACAGAGCTCA
ACTACGTCGCGCTTTCATTAGGTCGCATTCAACGCCAAAAGATCCAGAAG
TCGAAATAAACGATGCGGATGAAATCGAAGACCAGGGACCTGGCACTATA
AGATACGTCTCCAGCGACTCAGGAGGGTCCTCGTCTCGGCCGTCCATTCC
TATGAGTATAAAGCGTAAATTTACACGATCCAAAAAGGACAGCATCACTT
CAATAACCTCAGCACAGAAGCTGGACGAAGATTACCAGGTTTATCTAATG
GAGAAGCGAGCTACAGACACTTTCTTTTACATGATGCTCATCTTCTTCCT
ATGTTATATACCAGTTGTCATTATAAGTTTAACTATCCATTTATCGAAAG
GACGATATGGTTGTTACACTATCAACTTACTACAAGAGTGTATAGCTATA
CTATGTATCATCAGCTCTGTCTGCAAAACTATAGTATTTGTTGCACGTTT
AACAGCATTGAGGAAAGCTTGTATTAATTTGTTTATAAGTGATGAAGAGA
TGGAACGACGCTGGCGTAAAGAGAGTGTACCGATGGTGCCGAAAAAGAAG
AGGACTCTTAAGGATCGGCTGTTACAAAGGAAAGCACCGAATCATGAAGa
ggaaattgaaaaagaaatgttGACGTAGTTAAACTGCACCACAAATATTG
GTCCAACTAGATCCATTAGACTATTGCAAATCTAGGAAAGCAACAAATAT
gaggaatgaaattaacaatgAAATCCTAACTAATGTAGTTTTAGAATTGC
ACCATAACATTTTATCGCTGACAGCCCGATAGAGGAAATAAATatcaacc
cagctggcacacaacgttgttttaacgttcaagtaacgttatttggacgt
tatgaatgtcaaatggacgttgttttgacgttgtgtgccggct Coding sequence (CDS) from alignment at scaffold_193:290686..292678 >TCONS_00051100 ID=TCONS_00051100|Name=TCONS_00051100|organism=Clytia hemisphaerica|type=CDS|length=1182bp|location=Sequence derived from alignment at scaffold_193:290686..292678 (Clytia hemisphaerica)
ATGGCTGGCCAAATACCTTGTGAAGTTACCGATCAAGTGTTCCCAATCAT
CTTATGCACACTTTCAATACTTCTTACCATAATATCCGTGCCGTTAAACG
GAGTCGTACTCGTTGCGATCATCAAGAACAAAAAATTTCATAGTAATTTC
tatttcatcattttcaacACGACTGCTGCTGATTTTCTAATAGGTGCTAT
ATTATGTCCCTTATCGATTAACATTCACGTGCGTGAGATACGTGAAGAGC
CCGTAAACGGGACAGTGGACACGTTATTCCATTTTGGTTTATTCACATTA
GCCATGGTTTCAGTTTTAACAATCACTGTGCTCAGTATTGACCGAATGAT
TAGTTTAAAGTTTTCATCACAATACCGAGTCATGAAGAAGATAAATTTCA
TAGCAAGCTTATTAGCTGTGTGGGTCGTAACAGGTGGTCTATCGCCGATC
TATTTCATTCTCGATTACTCATTGTTCCTGACAATTATATCGCTATCGGC
TGTCCTAGTCACAGCAGTTATGATGTTCATAACATATATGTTCTACAGAG
CTCAACTACGTCGCGCTTTCATTAGGTCGCATTCAACGCCAAAAGATCCA
GAAGTCGAAATAAACGATGCGGATGAAATCGAAGACCAGGGACCTGGCAC
TATAAGATACGTCTCCAGCGACTCAGGAGGGTCCTCGTCTCGGCCGTCCA
TTCCTATGAGTATAAAGCGTAAATTTACACGATCCAAAAAGGACAGCATC
ACTTCAATAACCTCAGCACAGAAGCTGGACGAAGATTACCAGGTTTATCT
AATGGAGAAGCGAGCTACAGACACTTTCTTTTACATGATGCTCATCTTCT
TCCTATGTTATATACCAGTTGTCATTATAAGTTTAACTATCCATTTATCG
AAAGGACGATATGGTTGTTACACTATCAACTTACTACAAGAGTGTATAGC
TATACTATGTATCATCAGCTCTGTCTGCAAAACTATAGTATTTGTTGCAC
GTTTAACAGCATTGAGGAAAGCTTGTATTAATTTGTTTATAAGTGATGAA
GAGATGGAACGACGCTGGCGTAAAGAGAGTGTACCGATGGTGCCGAAAAA
GAAGAGGACTCTTAAGGATCGGCTGTTACAAAGGAAAGCACCGAATCATG
AAGaggaaattgaaaaagaaatgttGACGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051100-exon-scaffold_193-1491911889:290686..292678 | TCONS_00051100-exon-scaffold_193-1491911889:290686..292678 | Clytia hemisphaerica | exon |
| TCONS_00051100-exon-scaffold_193-1510915933:290686..292678 | TCONS_00051100-exon-scaffold_193-1510915933:290686..292678 | Clytia hemisphaerica | exon |
| TCONS_00051100-exon-scaffold_193-1575043694:290686..292678 | TCONS_00051100-exon-scaffold_193-1575043694:290686..292678 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_193 | supercontig | scaffold_193:290686..292678 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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