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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051119 ID=TCONS_00051119|Name=TCONS_00051119|organism=Clytia hemisphaerica|type=transcript|length=397bp
tgcgtgcagcctatcCAATGGATAGTCGGGTTGCCGTGGACCACTGCAAA
ACTGGGATATTGGGCATTCTAAACATTTACGATGAACAGGATTGGCTCAA
TGTTATGAACTTTGCAAACAACTTCGCAACGAGTGCGATAAAAGACAAGT
TACAAACGCGAAAGTTGGTCTACAACATAACTTAGGCTTGGGTGGCGCAT
GCGTTGTAGGATTGTACAAGAAATATAAACCGCTGCAATTACAACAGACT
TCAATGACAGATTCTTCACATTGCATTGAAAACTCTTTCCAATCAGATGT
CGTCTTCAAAGAAATTGAGCGCCGTTTAAAGGAGGAGAAAGCTACTCTCA
TCAAGAAATTCAAAGCAATTTTCTCATTTGAACTTGCCGGAGCTGAC Run BLAST on NCBI transcript from alignment at scaffold_197:51987..54907- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051119 ID=TCONS_00051119|Name=TCONS_00051119|organism=Clytia hemisphaerica|type=transcript|length=2921bp|location=Sequence derived from alignment at scaffold_197:51987..54907- (Clytia hemisphaerica)
TGCGTGCAGCCTATCCAATGGATAGTCGGGTTGCCGTGGACCACTGCAAA
ACTGGGATATTGGGCATTCTAAACATTTACGATGAACAGGCAAAGATCTT
TATGAACTTTTTTTTATAAAAACAAATATATAAGAACATAAGGCCTCTAT
GGCCAAAATATTTTTTGAATAAGTTAAAGACATTTTAAGGCTTTATGCAC
TCTAAAACGCCTGACTTTTTAGGAAATTGCTCAAAGATGATCACAAAATA
GTGAAAATAAGAACACTAGTTGTACTTCAATGACACTAAATTGATCATTA
GAGGAAAAAATTCTGTATCAACTCATTAGAGATCTTTCATCTTATCTTAG
GATTGGCTCAATGTTATGAACTTTGCAAACAACTTCGCAACGAGTGCGAT
AAAAGACAAGTTACAAACGCGAAAGTTGGTCTACAACATAACTTAGGCTT
GGGTGGCGCATGCGTTGTAGGATTGTACAAGAAATATAAACCGCTGCAAT
TACAACAGTAAGTTAATTTGATTATAATGTGTTTGTAATGTGCCTTTTGT
TACCAGCTTTCCTTGAGATTGGCCCATTAGTTTTTTTATACAAATTTTGG
CCAAAAAGTGCCGTGATTTATATCACGTACGCTTTGTTTTCGAAGTAATT
TCATAAGTAGTATACTATAAGTATATTTTTCTGGTGGCTGTCAGTGGAGC
CGGGAGTGAGAGAGTCTATCCCCTTTTCTATTTACGCCAGATGAGTTCGA
CTGCTGAGATGGAGCGCCACATCAACTCCCAACTCCCAATTATTTACCGC
CCAGTTCAGAATGTCCAATCTAAGCTAGTCAATCGCTGAGTTGGCGCTGA
CTGCGGATCAAACCCACATCCCTTGAATTACAAAGCGGGTGCTCTACTGA
CTGAGCTACCCGGCCATCTAATTACGTAATTTTATGCGACAACTTATTCT
CAATGAGATTTCCTTGGTGAATTCCTTGGAGGTAAGAAGGGGTAGAATGT
GAATTGGTATCTTACGGACCAATTTACTTATTCTTGATATGCGTAATTCA
AGATGACGTCATATTTTTTAACGGAAGCACTCGAAAAAAGCCGGACTTTG
ACTCCGTGTTTCTATTTTTAGTAACAGAGAGGGGTCAAATCCCGGATTTT
TTCGGGTGTTTCCGTTAGAAAAATGACTTACGCATATCAAGAAATGACCA
TGACCTTAATCTAAGGGACAAGCTGGAGTTTTTACAAGCTCTTATTTGAT
TTGGTTGGTCGTTAAGATGTAATAAAAGAATCTCATTACTTTTTCTAAAG
AACGCGTCATCTCTATCACTTTAAATGACCAATTAGTGAAGTATCTTGTA
AAAACTCCAGCTCATCCTTAATCTAAGTCTGGATATAGTCATAAATCAAA
AAGATGTTTATATTCTAATTATCTTTTTGTTTGGCCACCACCACTGACAT
CTTTTTTAACATTTATTCAGGACTTCAATGACAGATTCTTCACATTGCAT
TGAAAACTCTTTCCAATCAGATGTCGTCTTCAAAGAAATTGAGCGCCGTT
TAAAGGAGGTATAAACGCGTTTCTTTATATGAACAAACTTTATAGAACAA
AAGGCTTCGATAGCCAAAATGATAAAGAACAAGTTAAGAACATAAGGCTC
ATAAGGCTTTGGGACTCGAAAACACCCAATAACACAACGCACCGAGTCTA
AAAATAGTAACAAATCTGGACAAATTCATTCGTTTGTTCGACTTTCAATC
CCATCCTCCTTTGCGTTAATTGCCCTTTCACCTTAATTAATTACAATATC
AAAAAAAAAGGTAATAATCTCTGTGAGATGGAGAGCGCTATTCCATAGCA
AATTACACAAAAATGGTCTCAAAAAGGTAAAAATAAAAACATTTTAAGAA
CATTTTTAGGCTTAAAGTATTTATTTTTACATAAGTGATTCCGTTTCATA
TCAAACACATATTTCATATCAGGACAGAGTCTCCCTATTGTTATATTATG
CTGATATACGCAAAAAATGTTTTTCTTTTCCTCTTTTTGACCAATCTTGC
TCCACGATCGTGCCAATCCAATGTGAAAAAGCTTGTGAATTAAAATTGAT
GAGTAAGCAAACGATATCACTCTTATTTAAAAACAAAACCTTTAAAACTC
AAAAACTTTTAGAACATTCAATGGCTTCAAAAATTTTGTATGTCCGTATA
AGAATAAAATGTTTATGTTTTGAAGCTTTGTTAACAGATATCTCTTCTTA
GAAAGAGTTAATATTCAACGACTCGTTTAATCGCTTATTTTTCTTTCTGG
CTTGAAACTCAATGGGAGAGATAATATCGCGTCACCGATAAGGTCCCAAC
ACTTTTGTCATTAACTCCTTAAAGCCGGGTGTCCACTGGAAAAAATAAGT
TCATCGCGAATTTGTTTGTCGCAAAAAATAAATCCAGACAGATGTCTGGA
ATTAAAAACCTATTGTTTTATTTGCGATAGGGCGAAAAAAAATAAGCGAT
GAAAAATGAAAACGTTTTCATTCTACATCGTTTATTATTTTTTACTTCGT
CGTAAAAAAGAACAATAGATTTTTAATTCCAGACATATGTCTGGATTTAT
TTTTTGCGACAGGTATTTGCGACGAACTTATTTTTTTTCAGTGGACACCC
AGCTTAAGGGAAGAAATTTTGGCGGGAATTTAATTTGGCAAATGGCCGAA
AAACTTTCATTTAGACAAATCCACCAAATTAAGTCTCTTTGTCTCTTAAA
TTAATTCTGTCTCATTTTCGTAGTTTTACACCCAACTCCGCTATCTATTA
TGTATCAAAGTAGGACTTTTTCAATAACGCGCTTGTTTGCTGTTCTGTAT
TTTATCAGGAGAAAGCTACTCTCATCAAGAAATTCAAAGCAATTTTCTCA
TTTGAACTTGCCGGAGCTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051119-exon-scaffold_197-1575043694:54819..54907 | TCONS_00051119-exon-scaffold_197-1575043694:54819..54907 | Clytia hemisphaerica | exon |
| TCONS_00051119-exon-scaffold_197-1575043694:54401..54557 | TCONS_00051119-exon-scaffold_197-1575043694:54401..54557 | Clytia hemisphaerica | exon |
| TCONS_00051119-exon-scaffold_197-1575043694:53350..53437 | TCONS_00051119-exon-scaffold_197-1575043694:53350..53437 | Clytia hemisphaerica | exon |
| TCONS_00051119-exon-scaffold_197-1575043694:51987..52049 | TCONS_00051119-exon-scaffold_197-1575043694:51987..52049 | Clytia hemisphaerica | exon |
| TCONS_00051119-exon-scaffold_197-1510915933:54819..54907 | TCONS_00051119-exon-scaffold_197-1510915933:54819..54907 | Clytia hemisphaerica | exon |
| TCONS_00051119-exon-scaffold_197-1510915933:54401..54557 | TCONS_00051119-exon-scaffold_197-1510915933:54401..54557 | Clytia hemisphaerica | exon |
| TCONS_00051119-exon-scaffold_197-1510915933:53350..53437 | TCONS_00051119-exon-scaffold_197-1510915933:53350..53437 | Clytia hemisphaerica | exon |
| TCONS_00051119-exon-scaffold_197-1510915933:51987..52049 | TCONS_00051119-exon-scaffold_197-1510915933:51987..52049 | Clytia hemisphaerica | exon |
| TCONS_00051119-exon-scaffold_197-1491911889:54819..54907 | TCONS_00051119-exon-scaffold_197-1491911889:54819..54907 | Clytia hemisphaerica | exon |
| TCONS_00051119-exon-scaffold_197-1491911889:54401..54557 | TCONS_00051119-exon-scaffold_197-1491911889:54401..54557 | Clytia hemisphaerica | exon |
| TCONS_00051119-exon-scaffold_197-1491911889:53350..53437 | TCONS_00051119-exon-scaffold_197-1491911889:53350..53437 | Clytia hemisphaerica | exon |
| TCONS_00051119-exon-scaffold_197-1491911889:51987..52049 | TCONS_00051119-exon-scaffold_197-1491911889:51987..52049 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_197 | supercontig | scaffold_197:51987..54907 - |
Blast
BLAST of TCONS_00051119 vs. Swiss-Prot (Human)
Match: NLTP (Non-specific lipid-transfer protein OS=Homo sapiens GN=SCP2 PE=1 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 1.310e-17 Identity = 51/108 (47.22%), Postives = 70/108 (64.81%), Query Frame = 2
Query: 86 TGLAQCYELCKQLRNECDKRQVTNAKVGLQHNLGLGGACVVGLYK--------KYKPLQLQQTSMTDSSHCIENSFQSDVVFKEIERRLKEEKATLIKKFKAIFSFEL 385
TGLAQC ELC QLR E KRQV AKV LQHNLG+GGA VV LYK ++ Q++ + +S + F++++VFKEIE++L+EE +KK IF+F++
Sbjct: 360 TGLAQCAELCWQLRGEAGKRQVPGAKVALQHNLGIGGAVVVTLYKMGFPEAASSFRTHQIEAVPTSSAS----DGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKV 463
The following BLAST results are available for this feature:
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