|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051186 ID=TCONS_00051186|Name=TCONS_00051186|organism=Clytia hemisphaerica|type=transcript|length=591bp
TTGTAAAATAAGGGAATTAAAGTTTTAAGATTCTCAAAGATTCTCGAAAG
GTTTTTTTGCATTGGGCTTTTgcattttaagacatgccaacAAGTTAGAT
GAGATATCTATACGGCGGAAGACTTTTCTAAAATCATATTTCGGTACATT
TGTGACCCTATAGAAAACATCAGGAAATGAGAGCCTTCTACCCCAATGGT
TTGTGTGTAGGGGCCTCCAAAAGCTGAAGAGAAGAATTGGTTTCATGTTC
AGCACGATAGATTCAAGGTTATTCACGTGTTCTTCTCACCAGCTGATGAG
AACTGATCATATTGAGCAAATGAAGATCTAAAAGATTCTAAAAGTCTTCA
ATGAGTTAATCTTTAGGCTATACGTAGACATCGCGGTTTTTATTCTACGC
AATAACGTTTATTCCACTGTGCAACTTTTTCGAATGATACGAGGCCAGTT
ctaaacattcaatttcttgacgtcattttaaactttcaaagcAAGATCTT
GCAGTGTCAGGAAATTGAATTCGCGTCAGAACACTTGAAGGATTTGAGAA
AGTCATCGAAGTTCCAACCAACCAAGAAACGGGAAagtgaa Run BLAST on NCBI transcript from alignment at scaffold_2:17147..18165- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051186 ID=TCONS_00051186|Name=TCONS_00051186|organism=Clytia hemisphaerica|type=transcript|length=1019bp|location=Sequence derived from alignment at scaffold_2:17147..18165- (Clytia hemisphaerica)
TTGTAAAATAAGGGAATTAAAGTTTTAAGATTCTCAAAGATTCTCGAAAG
GTTCTTTCGCATTGGGTTTTTGCAGAAATAATCCGTACCCCCCTGTTGAG
GATATCGGATACCCAGGGGGTTAACGATTTTTGTTCAAAAGTGGATATCC
ACGGGGTTAAATATCTACAAGGGAGCGGATATCCAGGGGGTAAAATGTCT
TTTCAAGTAAAAAATACGATATCCAGGGGGTTGAGCATATTTTCAAAAGT
GGATATCCAGGGGGGGAGCGGTCTTTACTAATAAAGTAGGATACTTCGAA
AAATCAATATCCTCAACAGTATGGGTAAAATCTTTTTCTGCAAAAGCCCA
TTTTAAGACAAACCAACAAGTTAGATGAGATATCATGCTACACGCTAAAA
GAGGCTTTCCAAAAAGCGCAATCAAGACTCTGATTGTAAAATGAGGGAAT
TAAAAAGATTCTCAAAGATTCTCGAAAGGTTTTTTTGCATTGGGCTTTTG
CATTTTAAGACATGCCAACAAGTTAGATGAGATATCTATACGGCGGAAGA
CTTTTCTAAAATCATATTTCGGTACATTTGTGACCCTATAGAAAACATCA
GGAAATGAGAGCCTTCTACCCCAATGGTTTGTGTGTAGGGGCCTCCAAAA
GCTGAAGAGAAGAATTGGTTTCATGTTCAGCACGATAGATTCAAGGTTAT
TCACGTGTTCTTCTCACCAGCTGATGAGAACTGATCATATTGAGCAAATG
AAGATCTAAAAGATTCTAAAAGTCTTCAATGAGTTAATCTTTAGGCTATA
CGTAGACATCGCGGTTTTTATTCTACGCAATAACGTTTATTCCACTGTGC
AACTTTTTCGAATGATACGAGGCCAGTTCTAAACATTCAATTTCTTGACG
TCATTTTAAACTTTCAAAGCAAGATCTTGCAGTGTCAGGAAATTGAATTC
GCGTCAGAACACTTGAAGGATTTGAGAAAGTCATCGAAGTTCCAACCAAC
CAAGAAACGGGAAAGTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051186-exon-scaffold_2-1575043694:18116..18165 | TCONS_00051186-exon-scaffold_2-1575043694:18116..18165 | Clytia hemisphaerica | exon |
| TCONS_00051186-exon-scaffold_2-1575043694:17147..17687 | TCONS_00051186-exon-scaffold_2-1575043694:17147..17687 | Clytia hemisphaerica | exon |
| TCONS_00051186-exon-scaffold_2-1510915933:18116..18165 | TCONS_00051186-exon-scaffold_2-1510915933:18116..18165 | Clytia hemisphaerica | exon |
| TCONS_00051186-exon-scaffold_2-1510915933:17147..17687 | TCONS_00051186-exon-scaffold_2-1510915933:17147..17687 | Clytia hemisphaerica | exon |
| TCONS_00051186-exon-scaffold_2-1491911889:18116..18165 | TCONS_00051186-exon-scaffold_2-1491911889:18116..18165 | Clytia hemisphaerica | exon |
| TCONS_00051186-exon-scaffold_2-1491911889:17147..17687 | TCONS_00051186-exon-scaffold_2-1491911889:17147..17687 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:17147..18165 - |
Blast
The following BLAST results are available for this feature:
|
