TCONS_00051198 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051198
Unique NameTCONS_00051198
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length319

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051198 ID=TCONS_00051198|Name=TCONS_00051198|organism=Clytia hemisphaerica|type=transcript|length=319bp
AGTGGTTTTGCTCGTGGACACATGGTGCCAGCAAGTGACGTAAAGAAATC
ACAAGAGAGTATGCAAGAGACATTTTACCTCACCAATATTCTACCACAAG
ATTTTGAGAACAATGGAGGTTTTTGGTATCGTATGGAAAATTACTGCCGT
TCCTTAACCAACAGATTCACTGATGTTTACGTTATTTCGGGTCCACTGTT
CCTTTCGCATTTtgttcaaaataagaaaatggtGACTTTTCAGGTATGGT
TGTTTTCCTTGCTTTAAAGTTTCATTATGGGTATAGTAGTTGGAATAAAC
TGGCTTAAGTGGTTTTTTT
Run BLAST on NCBI

transcript from alignment at scaffold_2:498756..499300-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051198 ID=TCONS_00051198|Name=TCONS_00051198|organism=Clytia hemisphaerica|type=transcript|length=545bp|location=Sequence derived from alignment at scaffold_2:498756..499300- (Clytia hemisphaerica)
AGTGGTTTTGCTCGTGGACACATGGTGCCAGCAAGTAAGAAACGTTTCAC
ATTCTTTAACTATTTCACATACTCTGGGACAACACTCACAAAACATAACC
TGGAATGATTTTATTTAAAAATCTAAAAATTCGTATCAAAAGAATTGGTT
GAATTTACTGATTTGTTATGTAAACAAGATTGCTATCATCTAAATCAGAA
ATTGTTCTTTTAGGATATAGCTAAAATCAACGAATTTACATCCTTCTTCC
ACTTTTATAGGTGACGTAAAGAAATCACAAGAGAGTATGCAAGAGACATT
TTACCTCACCAATATTCTACCACAAGATTTTGAGAACAATGGAGGTTTTT
GGTATCGTATGGAAAATTACTGCCGTTCCTTAACCAACAGATTCACTGAT
GTTTACGTTATTTCGGGTCCACTGTTCCTTTCGCATTTTGTTCAAAATAA
GAAAATGGTGACTTTTCAGGTATGGTTGTTTTCCTTGCTTTAAAGTTTCA
TTATGGGTATAGTAGTTGGAATAAACTGGCTTAAGTGGTTTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032448XLOC_032448Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051198-exon-scaffold_2-1575043694:499267..499300TCONS_00051198-exon-scaffold_2-1575043694:499267..499300Clytia hemisphaericaexon
TCONS_00051198-exon-scaffold_2-1575043694:498756..499040TCONS_00051198-exon-scaffold_2-1575043694:498756..499040Clytia hemisphaericaexon
TCONS_00051198-exon-scaffold_2-1510915933:499267..499300TCONS_00051198-exon-scaffold_2-1510915933:499267..499300Clytia hemisphaericaexon
TCONS_00051198-exon-scaffold_2-1510915933:498756..499040TCONS_00051198-exon-scaffold_2-1510915933:498756..499040Clytia hemisphaericaexon
TCONS_00051198-exon-scaffold_2-1491911889:499267..499300TCONS_00051198-exon-scaffold_2-1491911889:499267..499300Clytia hemisphaericaexon
TCONS_00051198-exon-scaffold_2-1491911889:498756..499040TCONS_00051198-exon-scaffold_2-1491911889:498756..499040Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:498756..499300 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.21167	1.54855	3.06262	2.80278	3.55968	1.03095	4.33218	1.5911	8.38024	7.21281	4.01127	4.15529	2.56252	6.15037	3.9357	4.8801	6.63184	6.38411	4.44377	2.62849	5.77807	7.83659	3.997	3.42453	4.50102	1.85403	3.26806	3.16912	2.04544	5.3376
Blast
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BLAST of TCONS_00051198 vs. Swiss-Prot (Human)
Match: EXOG (Nuclease EXOG, mitochondrial OS=Homo sapiens GN=EXOG PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 4.435e-28
Identity = 48/83 (57.83%), Postives = 64/83 (77.11%), Query Frame = 1 
Query:    1 SGFARGHMVPASDVKKSQESMQETFYLTNILPQDFENNGGFWYRMENYCRSLTNRFTDVYVISGPLFLSHFVQN-KKMVTFQV 246
            SG++RGHM PA + K S ++M ETFYL+NI+PQDF+NN G+W R+E YCR LT RF DV+V+SGPL L     + KK+V++QV
Sbjct:  134 SGWSRGHMAPAGNNKFSSKAMAETFYLSNIVPQDFDNNSGYWNRIEMYCRELTERFEDVWVVSGPLTLPQTRGDGKKIVSYQV 216
The following BLAST results are available for this feature:
BLAST of TCONS_00051198 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EXOG4.435e-2857.83Nuclease EXOG, mitochondrial OS=Homo sapiens GN=EX... [more]
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