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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051201 ID=TCONS_00051201|Name=TCONS_00051201|organism=Clytia hemisphaerica|type=transcript|length=1540bp
AAATGAAACGCTTTGGTCGTATTTACATAAGTATAAAATTCAGCTTAGCA
ATTATGATTGTGAAGACACTGTGTGATTAGCATTTGCTAAAACATTGCAT
AACCAAAAATTTACGTTTCTACAAATTTTGAAGTCATTTCACGGTGAATC
TGGTTTGCTAGTTTCAATCTTTAcgagagaaaaataatttaaaatttggc
TAAGGTATGAATAGTTCATCAACAAAAAACAATACTTTTTGTTACGATTT
ACCGATTGCAGTTGGCAACTCGACTTTTTGTGGATTGACAGAAAAATGGA
GTCCACGTTTCTCTGAAGGGAGATTATTGGCAATGACAAGCATTCCAGTG
CTTATCTACTGGATTATTCTCTTCAAGATGATTAAGAAACTTTACAAAAC
AATCATCGAATCATGGCAGAAGCACATTGACGAAACCACAGAGGAATACT
GGGCTCAAAATCCATACCAATATCTTGAGGGAGTCGAATTGCTTTATAAA
GAAGAGAAATGGGCTGATGGAGTAAACTGCTCATGTAGATATTATTTTAA
GAATTATATTAGTAACCTTTTAGCCTCTCTCCGACGATCTAATGAAGTAG
GATTTATCCTTCGTGCTAAATCTTATTTTTCGTTAGTCGTTCttgttttg
gtgaaatatttttggGATGCAATTGATTTAACTTTAGATGTCTACATTTT
CTACCGACTTGAGAGAGGTGACATTTTAGATGCTGTTATACATCGAAATG
ATCATGTCAATGACTCGATCTATGCTTTTGCCATTCTTGGTTGCCTACCG
AAAATCCTTGCCTGGAAATTATATCAATCTTTAGCAAAGCAAAGCACAGA
AGGAGAATATTTAAGCTATGCTAAAAATATCATTGTTTTGGTTGGGTTTC
TATTTGAAGATGGCCCCGAATTGATCTTGGAATATTTCTAcgtcgaaaaa
tatatcacatCTTATACTACGCTTATGGTTGCAAAAGATTGTATGATCAC
TTTTTTATTGGTGCAAACTGCTATCAAAACGATGGCTTACTGTTTAAGAG
AGTATAAAGAACGTAATCATGCAATTCAGATATTGATAATAAATGTCATA
GTTCTTTTCTCGGTATTATCCTCTATCCTGCGTGTGGCTGGTTCTTTATA
TCAATACATCACCAAGAAATTGAGACGCTCTTGTTTCGAAATTACAGAAG
GAAGACTTTTACAAACACCGTTTGACTCAGAGTGCATGCGTGGTATCGAT
TATGCGGTTTTCGTCACTTCGCTTGTACCGTTGAGTGTGCTTTTGATTCT
CATATCTATGTTTTTTGTAATGCTTGTAAAAGTGCTTGTTATGATCTACA
AGCGGAACAGGACATTTGTAAACATTTCTGACGAAGAGGTTAACTTTGTG
ACGCGGTACACTTAATTTGTCGAATAAAATCTGATTTCCTGGGCACTGCA
GTCGAGACATTCTCGGAAACCTTTAAACAAAGGCGTAACTCCTTTTGAGA
ATCTACGGAAAACCTTTATCGATCAGGTGGTGAAAGGATC Run BLAST on NCBI protein sequence of TCONS_00051201-protein >TCONS_00051201-protein ID=TCONS_00051201-protein|Name=TCONS_00051201-protein|organism=Clytia hemisphaerica|type=polypeptide|length=402bp
MNSSSTKNNTFCYDLPIAVGNSTFCGLTEKWSPRFSEGRLLAMTSIPVLI
YWIILFKMIKKLYKTIIESWQKHIDETTEEYWAQNPYQYLEGVELLYKEE
KWADGVNCSCRYYFKNYISNLLASLRRSNEVGFILRAKSYFSLVVLVLVK
YFWDAIDLTLDVYIFYRLERGDILDAVIHRNDHVNDSIYAFAILGCLPKI
LAWKLYQSLAKQSTEGEYLSYAKNIIVLVGFLFEDGPELILEYFYVEKYI
TSYTTLMVAKDCMITFLLVQTAIKTMAYCLREYKERNHAIQILIINVIVL
FSVLSSILRVAGSLYQYITKKLRRSCFEITEGRLLQTPFDSECMRGIDYA
VFVTSLVPLSVLLILISMFFVMLVKVLVMIYKRNRTFVNISDEEVNFVTR
YT Run BLAST on NCBI transcript from alignment at scaffold_2:41631..43170 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051201 ID=TCONS_00051201|Name=TCONS_00051201|organism=Clytia hemisphaerica|type=transcript|length=1540bp|location=Sequence derived from alignment at scaffold_2:41631..43170 (Clytia hemisphaerica)
GATCCTTTCACCACCTGATCGATAAAGGTTTTCCGTAGATTCTCAAAAGG
AGTTACGCCTTTGTTTAAAGGTTTCCGAGAATGTCTCGACTGCAGTGCCC
AGGAAATCAGATTTTATTCGACAAATTAAGTGTACCGCGTCACAAAGTTA
ACCTCTTCGTCAGAAATGTTTACAAATGTCCTGTTCCGCTTGTAGATCAT
AACAAGCACTTTTACAAGCATTACAAAAAACATAGATATGAGAATCAAAA
GCACACTCAACGGTACAAGCGAAGTGACGAAAACCGCATAATCGATACCA
CGCATGCACTCTGAGTCAAACGGTGTTTGTAAAAGTCTTCCTTCTGTAAT
TTCGAAACAAGAGCGTCTCAATTTCTTGGTGATGTATTGATATAAAGAAC
CAGCCACACGCAGGATAGAGGATAATACCGAGAAAAGAACTATGACATTT
ATTATCAATATCTGAATTGCATGATTACGTTCTTTATACTCTCTTAAACA
GTAAGCCATCGTTTTGATAGCAGTTTGCACCAATAAAAAAGTGATCATAC
AATCTTTTGCAACCATAAGCGTAGTATAAGatgtgatatatttttcgacg
TAGAAATATTCCAAGATCAATTCGGGGCCATCTTCAAATAGAAACCCAAC
CAAAACAATGATATTTTTAGCATAGCTTAAATATTCTCCTTCTGTGCTTT
GCTTTGCTAAAGATTGATATAATTTCCAGGCAAGGATTTTCGGTAGGCAA
CCAAGAATGGCAAAAGCATAGATCGAGTCATTGACATGATCATTTCGATG
TATAACAGCATCTAAAATGTCACCTCTCTCAAGTCGGTAGAAAATGTAGA
CATCTAAAGTTAAATCAATTGCATCccaaaaatatttcaccaaaacaaGA
ACGACTAACGAAAAATAAGATTTAGCACGAAGGATAAATCCTACTTCATT
AGATCGTCGGAGAGAGGCTAAAAGGTTACTAATATAATTCTTAAAATAAT
ATCTACATGAGCAGTTTACTCCATCAGCCCATTTCTCTTCTTTATAAAGC
AATTCGACTCCCTCAAGATATTGGTATGGATTTTGAGCCCAGTATTCCTC
TGTGGTTTCGTCAATGTGCTTCTGCCATGATTCGATGATTGTTTTGTAAA
GTTTCTTAATCATCTTGAAGAGAATAATCCAGTAGATAAGCACTGGAATG
CTTGTCATTGCCAATAATCTCCCTTCAGAGAAACGTGGACTCCATTTTTC
TGTCAATCCACAAAAAGTCGAGTTGCCAACTGCAATCGGTAAATCGTAAC
AAAAAGTATTGTTTTTTGTTGATGAACTATTCATACCTTAgccaaatttt
aaattatttttctctcgTAAAGATTGAAACTAGCAAACCAGATTCACCGT
GAAATGACTTCAAAATTTGTAGAAACGTAAATTTTTGGTTATGCAATGTT
TTAGCAAATGCTAATCACACAGTGTCTTCACAATCATAATTGCTAAGCTG
AATTTTATACTTATGTAAATACGACCAAAGCGTTTCATTT Coding sequence (CDS) from alignment at scaffold_2:41631..43170 >TCONS_00051201 ID=TCONS_00051201|Name=TCONS_00051201|organism=Clytia hemisphaerica|type=CDS|length=1209bp|location=Sequence derived from alignment at scaffold_2:41631..43170 (Clytia hemisphaerica)
TTAAGTGTACCGCGTCACAAAGTTAACCTCTTCGTCAGAAATGTTTACAA
ATGTCCTGTTCCGCTTGTAGATCATAACAAGCACTTTTACAAGCATTACA
AAAAACATAGATATGAGAATCAAAAGCACACTCAACGGTACAAGCGAAGT
GACGAAAACCGCATAATCGATACCACGCATGCACTCTGAGTCAAACGGTG
TTTGTAAAAGTCTTCCTTCTGTAATTTCGAAACAAGAGCGTCTCAATTTC
TTGGTGATGTATTGATATAAAGAACCAGCCACACGCAGGATAGAGGATAA
TACCGAGAAAAGAACTATGACATTTATTATCAATATCTGAATTGCATGAT
TACGTTCTTTATACTCTCTTAAACAGTAAGCCATCGTTTTGATAGCAGTT
TGCACCAATAAAAAAGTGATCATACAATCTTTTGCAACCATAAGCGTAGT
ATAAGatgtgatatatttttcgacgTAGAAATATTCCAAGATCAATTCGG
GGCCATCTTCAAATAGAAACCCAACCAAAACAATGATATTTTTAGCATAG
CTTAAATATTCTCCTTCTGTGCTTTGCTTTGCTAAAGATTGATATAATTT
CCAGGCAAGGATTTTCGGTAGGCAACCAAGAATGGCAAAAGCATAGATCG
AGTCATTGACATGATCATTTCGATGTATAACAGCATCTAAAATGTCACCT
CTCTCAAGTCGGTAGAAAATGTAGACATCTAAAGTTAAATCAATTGCATC
ccaaaaatatttcaccaaaacaaGAACGACTAACGAAAAATAAGATTTAG
CACGAAGGATAAATCCTACTTCATTAGATCGTCGGAGAGAGGCTAAAAGG
TTACTAATATAATTCTTAAAATAATATCTACATGAGCAGTTTACTCCATC
AGCCCATTTCTCTTCTTTATAAAGCAATTCGACTCCCTCAAGATATTGGT
ATGGATTTTGAGCCCAGTATTCCTCTGTGGTTTCGTCAATGTGCTTCTGC
CATGATTCGATGATTGTTTTGTAAAGTTTCTTAATCATCTTGAAGAGAAT
AATCCAGTAGATAAGCACTGGAATGCTTGTCATTGCCAATAATCTCCCTT
CAGAGAAACGTGGACTCCATTTTTCTGTCAATCCACAAAAAGTCGAGTTG
CCAACTGCAATCGGTAAATCGTAACAAAAAGTATTGTTTTTTGTTGATGA
ACTATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051201-exon-scaffold_2-1491911889:41631..43170 | TCONS_00051201-exon-scaffold_2-1491911889:41631..43170 | Clytia hemisphaerica | exon |
| TCONS_00051201-exon-scaffold_2-1510915933:41631..43170 | TCONS_00051201-exon-scaffold_2-1510915933:41631..43170 | Clytia hemisphaerica | exon |
| TCONS_00051201-exon-scaffold_2-1575043694:41631..43170 | TCONS_00051201-exon-scaffold_2-1575043694:41631..43170 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:41631..43170 . |
Blast
The following BLAST results are available for this feature:
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