TCONS_00051202 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051202
Unique NameTCONS_00051202
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length360

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051202 ID=TCONS_00051202|Name=TCONS_00051202|organism=Clytia hemisphaerica|type=transcript|length=360bp
TCCGTACGCTATATTCAACATTTGTCCGACCACACCTTGAGTACGCACAA
TCAGTTTGGTCACCAAGATTACGCAAACACGTCAACTTACTTGAGGGAGT
GCAAAGACGTGCAACAAAATTGGTCCCAACGCACCGCAGCCTTTCATATA
GTGATAGGCTCAAAATTCTCGGCTTACCAACACTCGAATTTCGAAGACGA
TTTTGTGATATGGTACAGGTTTACAAACACCTCCACTACTACGATAAAAC
AACAATACCTGACAAGTTGACTAAACGTCCGCGTCCAAATCGAAGACACC
CCCATGAGCTTCTACCTAACTTCGCAAATGACGGTTTCCACGGACCACAA
ACGAAATCCT
Run BLAST on NCBI

protein sequence of TCONS_00051202-protein

>TCONS_00051202-protein ID=TCONS_00051202-protein|Name=TCONS_00051202-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
RTLYSTFVRPHLEYAQSVWSPRLRKHVNLLEGVQRRATKLVPTHRSLSYS
DRLKILGLPTLEFRRRFCDMVQVYKHLHYYDKTTIPDKLTKRPRPNRRHP
HELLPNFANDGFHGPQTKS
Run BLAST on NCBI

transcript from alignment at scaffold_2:44995..45354

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051202 ID=TCONS_00051202|Name=TCONS_00051202|organism=Clytia hemisphaerica|type=transcript|length=360bp|location=Sequence derived from alignment at scaffold_2:44995..45354 (Clytia hemisphaerica)
AGGATTTCGTTTGTGGTCCGTGGAAACCGTCATTTGCGAAGTTAGGTAGA
AGCTCATGGGGGTGTCTTCGATTTGGACGCGGACGTTTAGTCAACTTGTC
AGGTATTGTTGTTTTATCGTAGTAGTGGAGGTGTTTGTAAACCTGTACCA
TATCACAAAATCGTCTTCGAAATTCGAGTGTTGGTAAGCCGAGAATTTTG
AGCCTATCACTATATGAAAGGCTGCGGTGCGTTGGGACCAATTTTGTTGC
ACGTCTTTGCACTCCCTCAAGTAAGTTGACGTGTTTGCGTAATCTTGGTG
ACCAAACTGATTGTGCGTACTCAAGGTGTGGTCGGACAAATGTTGAATAT
AGCGTACGGA

Coding sequence (CDS) from alignment at scaffold_2:44995..45354

>TCONS_00051202 ID=TCONS_00051202|Name=TCONS_00051202|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at scaffold_2:44995..45354 (Clytia hemisphaerica)
GGATTTCGTTTGTGGTCCGTGGAAACCGTCATTTGCGAAGTTAGGTAGAA
GCTCATGGGGGTGTCTTCGATTTGGACGCGGACGTTTAGTCAACTTGTCA
GGTATTGTTGTTTTATCGTAGTAGTGGAGGTGTTTGTAAACCTGTACCAT
ATCACAAAATCGTCTTCGAAATTCGAGTGTTGGTAAGCCGAGAATTTTGA
GCCTATCACTATATGAAAGGCTGCGGTGCGTTGGGACCAATTTTGTTGCA
CGTCTTTGCACTCCCTCAAGTAAGTTGACGTGTTTGCGTAATCTTGGTGA
CCAAACTGATTGTGCGTACTCAAGGTGTGGTCGGACAAATGTTGAATATA
GCGTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032452XLOC_032452Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051202-proteinTCONS_00051202-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051202-exon-scaffold_2-1491911889:44995..45354TCONS_00051202-exon-scaffold_2-1491911889:44995..45354Clytia hemisphaericaexon
TCONS_00051202-exon-scaffold_2-1510915933:44995..45354TCONS_00051202-exon-scaffold_2-1510915933:44995..45354Clytia hemisphaericaexon
TCONS_00051202-exon-scaffold_2-1575043694:44995..45354TCONS_00051202-exon-scaffold_2-1575043694:44995..45354Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:44995..45354 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.75923	2.52027	5.32049	6.24632	4.75269	3.25488	1.51034	2.54513	2.17788	2.20718	4.99879	2.97306	2.81266	1.78504	0.933894	1.43173	1.76377	2.35016	1.49855	0.52271	1.36299	1.99445	0.808174	1.71441	2.27032	2.92674	3.54382	1.3753	1.04311	1.59415
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051202 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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