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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051209 ID=TCONS_00051209|Name=TCONS_00051209|organism=Clytia hemisphaerica|type=transcript|length=1097bp
TTtatcaacaaaatgtttttttctctaaaagtcATATCAAGGTTTCAAAA
AAACTCATATTACATTCTTGAAAGTCATATTACATTCCTGAAAGTCATAT
TACattataatttgaaatcactgaaaaataattcagaTTTTTAATGTAGT
TTATCTTCTTTCACCAACTCTTGGAAGATTGATGATCTCATGTTCATTGT
CTATGATCCTACAAAGACGAACATGCGGCCGGCCAGGTAAATTCTCCACC
ATTTCAAAAAAGCCATCCAAGTCAAATGTTCTTCTGACCTTCCAAAATTC
ATAGTATTGATCACCATGACCACCGCCTCGTTCTCTTCTTAAAGCACGAG
TGTGTTCTCTCCCTCTGTCACCTACATCCATCAGATCAGTAGGAAAGTTT
GTTGCTCGGCGTGGATCATAAGAATCTTGATCAATCATAAAGCCATTGAT
TCTTCTTGCTACTAGCTGACTGCTTCTTTCCAAAACATCAATATGGACAT
AATAATCATTACCACCATCATCATTCCCAGCTTCATCACCTGGAGCAGCA
TCATCTTGGTTCGGTTCACCACCATCATCGTTCCCAGCTTCATCACCTGG
AGCAGCCTCATCTTGGTTCGGTTCACCACCATCATCGTTCCCAGCTTCAT
CACCTGGAGCAGCCTCTTCTTGGTTCCCTaaatcttcttcatcttcttgt
TCTTGGTTGTTTCTCAATGAGAGCTGTTCTACTTCATGAGCTAAGTCGGA
TGACATGACTGATTACTAAAGgatttttgttttaatgaattttttccTTT
ATCGCTGCGACCGAATAACTGAAACAACAGCTACTTTGATCGATGTTATT
TTAACAACTGACGCATCAAACATCTCGTGTTCCCAAGTTATTAATTGTAG
TATGAGTGATCATGATATTGTTGCTTGCTGTCGAAAATTGAACCATTTTA
AATATGAACCAGAAACTATTAAGTgcagagatttttcaaaatacaatGTT
GACACAATCAATAATGAACTGTTAAATGTTGATTGGAATGTCGTTTACAG
CACTACATGTCCTGTCAATGCACTCACCCACCTTTTATCGATTCTCA Run BLAST on NCBI protein sequence of TCONS_00051209-protein >TCONS_00051209-protein ID=TCONS_00051209-protein|Name=TCONS_00051209-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
MSSDLAHEVEQLSLRNNQEQEDEEDLGNQEEAAPGDEAGNDDGGEPNQDE
AAPGDEAGNDDGGEPNQDDAAPGDEAGNDDGGNDYYVHIDVLERSSQLVA
RRINGFMIDQDSYDPRRATNFPTDLMDVGDRGREHTRALRRERGGGHGDQ
YYEFWKVRRTFDLDGFFEMVENLPGRPHVRLCRIIDNEHEIINLPRVGER
R Run BLAST on NCBI transcript from alignment at scaffold_2:358870..359966 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051209 ID=TCONS_00051209|Name=TCONS_00051209|organism=Clytia hemisphaerica|type=transcript|length=1097bp|location=Sequence derived from alignment at scaffold_2:358870..359966 (Clytia hemisphaerica)
TGAGAATCGATAAAAGGTGGGTGAGTGCATTGACAGGACATGTAGTGCTG
TAAACGACATTCCAATCAACATTTAACAGTTCATTATTGATTGTGTCAAC
attgtattttgaaaaatctctgcACTTAATAGTTTCTGGTTCATATTTAA
AATGGTTCAATTTTCGACAGCAAGCAACAATATCATGATCACTCATACTA
CAATTAATAACTTGGGAACACGAGATGTTTGATGCGTCAGTTGTTAAAAT
AACATCGATCAAAGTAGCTGTTGTTTCAGTTATTCGGTCGCAGCGATAAA
ggaaaaaattcattaaaacaaaaatcCTTTAGTAATCAGTCATGTCATCC
GACTTAGCTCATGAAGTAGAACAGCTCTCATTGAGAAACAACCAAGAaca
agaagatgaagaagatttAGGGAACCAAGAAGAGGCTGCTCCAGGTGATG
AAGCTGGGAACGATGATGGTGGTGAACCGAACCAAGATGAGGCTGCTCCA
GGTGATGAAGCTGGGAACGATGATGGTGGTGAACCGAACCAAGATGATGC
TGCTCCAGGTGATGAAGCTGGGAATGATGATGGTGGTAATGATTATTATG
TCCATATTGATGTTTTGGAAAGAAGCAGTCAGCTAGTAGCAAGAAGAATC
AATGGCTTTATGATTGATCAAGATTCTTATGATCCACGCCGAGCAACAAA
CTTTCCTACTGATCTGATGGATGTAGGTGACAGAGGGAGAGAACACACTC
GTGCTTTAAGAAGAGAACGAGGCGGTGGTCATGGTGATCAATACTATGAA
TTTTGGAAGGTCAGAAGAACATTTGACTTGGATGGCTTTTTTGAAATGGT
GGAGAATTTACCTGGCCGGCCGCATGTTCGTCTTTGTAGGATCATAGACA
ATGAACATGAGATCATCAATCTTCCAAGAGTTGGTGAAAGAAGATAAACT
ACATTAAAAAtctgaattatttttcagtgatttcaaattataatGTAATA
TGACTTTCAGGAATGTAATATGACTTTCAAGAATGTAATATGAGTTTTTT
TGAAACCTTGATATgacttttagagaaaaaaacattttgttgataAA Coding sequence (CDS) from alignment at scaffold_2:358870..359966 >TCONS_00051209 ID=TCONS_00051209|Name=TCONS_00051209|organism=Clytia hemisphaerica|type=CDS|length=606bp|location=Sequence derived from alignment at scaffold_2:358870..359966 (Clytia hemisphaerica)
ATGTCATCCGACTTAGCTCATGAAGTAGAACAGCTCTCATTGAGAAACAA
CCAAGAacaagaagatgaagaagatttAGGGAACCAAGAAGAGGCTGCTC
CAGGTGATGAAGCTGGGAACGATGATGGTGGTGAACCGAACCAAGATGAG
GCTGCTCCAGGTGATGAAGCTGGGAACGATGATGGTGGTGAACCGAACCA
AGATGATGCTGCTCCAGGTGATGAAGCTGGGAATGATGATGGTGGTAATG
ATTATTATGTCCATATTGATGTTTTGGAAAGAAGCAGTCAGCTAGTAGCA
AGAAGAATCAATGGCTTTATGATTGATCAAGATTCTTATGATCCACGCCG
AGCAACAAACTTTCCTACTGATCTGATGGATGTAGGTGACAGAGGGAGAG
AACACACTCGTGCTTTAAGAAGAGAACGAGGCGGTGGTCATGGTGATCAA
TACTATGAATTTTGGAAGGTCAGAAGAACATTTGACTTGGATGGCTTTTT
TGAAATGGTGGAGAATTTACCTGGCCGGCCGCATGTTCGTCTTTGTAGGA
TCATAGACAATGAACATGAGATCATCAATCTTCCAAGAGTTGGTGAAAGA
AGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051209-exon-scaffold_2-1491911889:358870..359966 | TCONS_00051209-exon-scaffold_2-1491911889:358870..359966 | Clytia hemisphaerica | exon |
| TCONS_00051209-exon-scaffold_2-1510915933:358870..359966 | TCONS_00051209-exon-scaffold_2-1510915933:358870..359966 | Clytia hemisphaerica | exon |
| TCONS_00051209-exon-scaffold_2-1575043694:358870..359966 | TCONS_00051209-exon-scaffold_2-1575043694:358870..359966 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:358870..359966 . |
Blast
The following BLAST results are available for this feature:
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