TCONS_00051214 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051214
Unique NameTCONS_00051214
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length354

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051214 ID=TCONS_00051214|Name=TCONS_00051214|organism=Clytia hemisphaerica|type=transcript|length=354bp
GTGGATCTCTGCTGCTCGATATAGATTTTTTCGATATTTGGTTGGCTACT
CAAGCAAGGAAAAAAGaagtaaaagaagaaattcaagCCACATCACATCA
ACAAATAAAGACTGTTggaaaaggaagaaattattgtaaTGGTGCCCTTT
GGTTTAGAAAGCATTTTGTCGATACAAGAAGgaTGCTGCTTATTGAAATA
TTATTAGTCTTTTACAAACTGAGATGTGACACGATGTGACTTGGTGAGCT
TTGAACCCACCTTTATGATTTTCGAtaaatatatttcataaaattgtttg
ttttgttttaattttgtctCCATCCCTTACCACAATTATTATTGCATATC
TTTG
Run BLAST on NCBI

transcript from alignment at scaffold_20:90311..91015+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051214 ID=TCONS_00051214|Name=TCONS_00051214|organism=Clytia hemisphaerica|type=transcript|length=705bp|location=Sequence derived from alignment at scaffold_20:90311..91015+ (Clytia hemisphaerica)
GTGGATCTCTGCTGCTCGATATAGATTTTTTCGATATTTGGTTGGCTACT
CAAGCAAGGAAAAAAGaagtaaaagaagaaattcaagCCACATCACATCA
ACAAATAAAGACTGTTggaaaaggaagaaattattgtaaTGGTGCCCTTT
GGTTTAGAAAGCATTTTGTCGATACAAGAAGGTAAGCAATGCTTTATAAA
ATATATAGTCTCAGTTTCTTTGCATTTTTTGTTCTATTGTTTTTCTCGCT
CAGTACTCCTACTTCTTTCGAggtggaaaaatgaaaaaccgaTTGATTGC
TGTCCAGTTCATATCAAAATCCTCCTTTAAAAATTGACAATATTTCAATG
GGTAAACTTCCTTCCAGAAATATTGCTAGAAACCAACCAACCACCCCTGT
CTCCTCTCTGGTTACCCTCCTCTTTGTAGAATTCTTATCACTTGAGTCTT
TTTCAGCGTTCATAACTGTTCACAGGAAGAGATCTGTCCAGCTGAATATT
CTTGGATTgattttcctttgtttcatttttaggaTGCTGCTTATTGAAAT
ATTATTAGTCTTTTACAAACTGAGATGTGACACGATGTGACTTGGTGAGC
TTTGAACCCACCTTTATGATTTTCGAtaaatatatttcataaaattgttt
gttttgttttaattttgtctCCATCCCTTACCACAATTATTATTGCATAT
CTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032463XLOC_032463Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051214-exon-scaffold_20-1491911889:90311..90491TCONS_00051214-exon-scaffold_20-1491911889:90311..90491Clytia hemisphaericaexon
TCONS_00051214-exon-scaffold_20-1510915933:90311..90491TCONS_00051214-exon-scaffold_20-1510915933:90311..90491Clytia hemisphaericaexon
TCONS_00051214-exon-scaffold_20-1575043694:90311..90491TCONS_00051214-exon-scaffold_20-1575043694:90311..90491Clytia hemisphaericaexon
TCONS_00051214-exon-scaffold_20-1491911889:90843..91015TCONS_00051214-exon-scaffold_20-1491911889:90843..91015Clytia hemisphaericaexon
TCONS_00051214-exon-scaffold_20-1510915933:90843..91015TCONS_00051214-exon-scaffold_20-1510915933:90843..91015Clytia hemisphaericaexon
TCONS_00051214-exon-scaffold_20-1575043694:90843..91015TCONS_00051214-exon-scaffold_20-1575043694:90843..91015Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:90311..91015 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.329956	0	0	0	0.206182	0	0	0	0	0	0	0.309409	0	0	0	0	0.236565	0	0	0	0	0	0	0.358051	0.552724	0.564969
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051214 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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