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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051216 ID=TCONS_00051216|Name=TCONS_00051216|organism=Clytia hemisphaerica|type=transcript|length=1234bp
GATAAAACGAGACATTGTTCTGAACACTAAAGGAAAGTTTTGTCATAAGC
CTTCTACAGGGATATTCCCTTTGGCGTTTGAAGTATATTGGACGCCGTCT
CTTCGTTTAAGGGCTCAGACAAAACTAAAATGATAATTTAAGGATGCAAA
CGCACTTAAATTATATTAAAAGAAGGCGGTTCAGTATTTGTTTCTGATGA
atgtatattttttctaaactaaAGTTAATGCATTTGTCAAAATGCATCTT
CTAAAACTAGACGTGGGATTTTCTAACCCATTAATTAGCCTGTCTTCCAA
AGAGAGAAATTAGCCTCTTCTCCTCATTCTATCCCCAAATATTCataaag
aacaaaacaaaaataacaaacaaacaaacaaacaaaaaatgttaaaaata
gtaaatatagataaattgtgaaaatagaaatttttaatattcattaatta
taatttttgagcttaaaaacttttaaagcttatgtttttattcaaaaaaa
aaatttcaaataatataataatttttaaaaaacaatttgcaTCTTGGTAA
ATGTCCGGAAAAATCCGCTACTAAACAAAATAGTGTTGTATTCCGGACAC
TTCAGAGACATAACATTTATGAGACGGCTTAATAAATTCAATACTAGCTG
GAACCAATATGCAAATATCGTTTTTATAGGAAAGAAAGGTGCCATCTTGA
AAGACGACAGTTTCAGATAAATTTCACATTCTTATTTCGACTTACAATTT
CTGTAACCGAGAGAAGCTAAAAGAATACAAGAGATTACATTATGATTGTT
CAACTCTTTTCAATGTAAAAGGGTGTAGGTAGTTCTATCTTCTAAAAAAT
TCTATTCCTAAAAGCTTTGTTAATAAATACATTTTGTAAGGCAGAGGCTT
GTACGGTACCATGTCAGCATAATTTTCAACCAATTCAAGGCTTATCCACG
AAAGCATACGTCTGAGTGATCCACTCGGACCATCTCGGACGAACTCACAT
TTTCCGCGTTTGGGATGGGTATTCGATTCAAGTATGATACAATCCAGAAA
TTGGACATATTataaaaatcaccaaatttttcatttaacttAGAAGATTC
CTGATTTCTTTATGAACATGACATAAAAAGTCTACATAACTCATTTGACC
AGCATTGAATCCTTTATCTTCAACAATATAATGTTTAAACCAGGGCTCTA
ATTTGTCGCGTTGACGAACGATAGTTAactaaaa Run BLAST on NCBI transcript from alignment at scaffold_20:167270..168548+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051216 ID=TCONS_00051216|Name=TCONS_00051216|organism=Clytia hemisphaerica|type=transcript|length=1279bp|location=Sequence derived from alignment at scaffold_20:167270..168548+ (Clytia hemisphaerica)
GATAAAACGAGACATTGTTCTGAACACTAAAGGAAAGTTTTGTCATAAGC
CTTCTACAGGGATATTCCCTTTGGCGTTTGAAGTATATTGGACGCCGTCT
CTTCGTTTAAGGGCTCAGACAAAACTAAAATGATAATTTAAGGATGCAAA
CGCACTTAAATTATATTAAAAGAAGGCGGTTCAGTATTTGTTTCTGATGA
atgtatattttttctaaactaaAGTTAATGCATTTGTCAAAATGCATCTT
CTAAAACTAGACGTGGGATTTTCTAACCCATTAATTAGCCTGTCTTCCAA
AGAGAGAAATTAGCCTCTTCTCCTCATTCTATCCCCAAATATTCataaag
aacaaaacaaaaataacaaacaaacaaacaaacaaaaaatgttaaaaata
gtaaatatagataaattgtgaaaatagaaatttttaatattcattaatta
taatttttgagcttaaaaacttttaaagcttatgtttttattcaaaaaaa
aaatttcaaataatataataatttttaaaaaacaatttgcaTCTTGGTAA
ATGTCCGGAAAAATCCGCTACTAAACAAAATAGTGTTGTATTCCGGACAC
TTCAGAGACATAACATTTATGAGACGGCTTAATAAATTCAATACTAGCTG
GAACCAATATGCAAATATCGTTTTTATAGGAAAGAAAGGTGCCATCTTGA
AAGACGACAGTTTCAGATAAATTTCACATTCTTATTTCGACTTACAATTT
CTGTAACCGAGAGAAGCTAAAAGAATACAAGAGATTACATTATGCTTGTT
CAACTCTTTTCAATGTAAAAGGGTAGAGATTACATTATGATTGTTCAACT
CTTTTCAATGTAAAAGGGTGTAGGTAGTTCTATCTTCTAAAAAATTCTAT
TCCTAAAAGCTTTGTTAATAAATACATTTTGTAAGGCAGAGGCTTGTACG
GTACCATGTCAGCATAATTTTCAACCAATTCAAGGCTTATCCACGAAAGC
ATACGTCTGAGTGATCCACTCGGACCATCTCGGACGAACTCACATTTTCC
GCGTTTGGGATGGGTATTCGATTCAAGTATGATACAATCCAGAAATTGGA
CATATTataaaaatcaccaaatttttcatttaacttAGAAGATTCCTGAT
TTCTTTATGAACATGACATAAAAAGTCTACATAACTCATTTGACCAGCAT
TGAATCCTTTATCTTCAACAATATAATGTTTAAACCAGGGCTCTAATTTG
TCGCGTTGACGAACGATAGTTAactaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051216-exon-scaffold_20-1491911889:167270..168057 | TCONS_00051216-exon-scaffold_20-1491911889:167270..168057 | Clytia hemisphaerica | exon |
| TCONS_00051216-exon-scaffold_20-1510915933:167270..168057 | TCONS_00051216-exon-scaffold_20-1510915933:167270..168057 | Clytia hemisphaerica | exon |
| TCONS_00051216-exon-scaffold_20-1575043694:167270..168057 | TCONS_00051216-exon-scaffold_20-1575043694:167270..168057 | Clytia hemisphaerica | exon |
| TCONS_00051216-exon-scaffold_20-1491911889:168103..168548 | TCONS_00051216-exon-scaffold_20-1491911889:168103..168548 | Clytia hemisphaerica | exon |
| TCONS_00051216-exon-scaffold_20-1510915933:168103..168548 | TCONS_00051216-exon-scaffold_20-1510915933:168103..168548 | Clytia hemisphaerica | exon |
| TCONS_00051216-exon-scaffold_20-1575043694:168103..168548 | TCONS_00051216-exon-scaffold_20-1575043694:168103..168548 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_20 | supercontig | scaffold_20:167270..168548 + |
Blast
The following BLAST results are available for this feature:
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