TCONS_00051222 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051222
Unique NameTCONS_00051222
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1690

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051222 ID=TCONS_00051222|Name=TCONS_00051222|organism=Clytia hemisphaerica|type=transcript|length=1690bp
CCTCGCTTGGTGTAGAGAGCCTGGTCCGATTTGAAAGTATAAATCTTGCA
AAATAACACTTCTCGAAATCATTCCAGGCCGTCCAGACGGACTTCACTGA
CTGtgatttttgaaagtcaaataTTGAACTTTTACATTTCTTGGAGATtt
aactttgtttattttggttaTAAAGCACAAGCAAAGATGCCAAACATTAA
GATTTTCAGTGGTAGCTCTCACATGGACTTGGCCAGGCTGGTTGCAGAGA
GGTTGAACATGGAAATGGGTCGTGTCAAACTGAGGAAATTCTCCAACAAG
GAAACTAGCGTGGAAGTTGGTGAGTCAGTTCGAGGTGAGGATGTTTATAT
CATTCAAAGTGGATGTGGAGATATCAACGATAACTTGATGGAATTGCTCA
TCATGATCAATGCATGCAAAATTGCATCTGCTGCTAGAGTTACAGCTGTC
ATTCCTTGCTTCCCTTATGCACGTCAAGATAAGAAAGACAAGAGCAGAGC
ACCAATTTCGGCCAAACTTGTTGCAAACATGCTCTCTGTTGCTGGAGCTG
ACCATATCATCACTATGGACCTACATGCTTCTCAAATTCAGGGATTCTTT
GACATTCCTGTTGACAATTTGTTTGCTGAGCCAGCGGTACTGAAGTACAT
AAGAGAAAATCTTCCTGATTGGGAACAGTGTGTTATTGTCTCACCAGATG
CTGGGGGTGCCAAACGTGTCACGTCTATTGCTGATCAACTGAATGTGGAA
TTTGCACTTATTCACAAAGAgAGGAAAAAAGCCAATGAAGTGGATAGCAT
GGTTCTCGTTGGAAACGTGACTGATAAAGTAGCGGTCCTAGTTGATGATA
TGGCAGATACCTGTGGAACTATGAAGTTGGCTGCAAAAAAGTTGAACGAA
GCTGGTGCAAAAGAAGTATACTGTATATTCACGCATGGTATCTTATCGGG
TCCTGCTGTATCTCGTTTGATGGAATCTGAAATCAAATCCGTCATCGTTA
CCAATACGATACCCCAAGAAGACAAGATGGCACAATGCCCAAAAATCAAG
cTAATTGATATTTCACCCATCCTTGCTGAGGCAATCCGAAGGACGCATAA
TGGCGAGTCAGTTTCATATTTGTTCAGTCATGTTCCTCTATGAGTAACAA
AAGAGTCATATGAAACTATGTATTGCATGCACCCTTGACTTTCAAGTATG
GACATCCACTCTAGTTTTCGTACAGCTAGAAGCTCTCACTCGAGCGTAAT
ATTAGAAGAGCTTGACAAAGATGCTCTGTCATAAAATGACTGATTGACAT
TAAATTGACACATTACTAACACTGACATTAACTGAGTTCAACTTTGTGTA
ATATAAGGTGGAGCCTGTCTTCGCCGCATAATAATTTATAAATagctttt
gttttttaaaagttgTTCCCCTCGCATTGTACAAAATAGTGttgttaatg
attttttttcttaatgaTAGTTCAGCAACGTGCATCGTACTAGAAGTATG
TTCATGCCGTTCTAGGTTCTTAGAGAATTTGTAGTTTTTTTCAGATTAAA
ATTTTCACCCGAATTTGTGTTCAATCGAGTGttgagagaaaaagagagac
aaatttattatttaaattcgttttataaTGAGATTTTATTAacgttttaa
aattgaaaatacatcAACATTGCTGGACACTATAGAAATC
Run BLAST on NCBI

protein sequence of TCONS_00051222-protein

>TCONS_00051222-protein ID=TCONS_00051222-protein|Name=TCONS_00051222-protein|organism=Clytia hemisphaerica|type=polypeptide|length=318bp
MPNIKIFSGSSHMDLARLVAERLNMEMGRVKLRKFSNKETSVEVGESVRG
EDVYIIQSGCGDINDNLMELLIMINACKIASAARVTAVIPCFPYARQDKK
DKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLFAEPA
VLKYIRENLPDWEQCVIVSPDAGGAKRVTSIADQLNVEFALIHKERKKAN
EVDSMVLVGNVTDKVAVLVDDMADTCGTMKLAAKKLNEAGAKEVYCIFTH
GILSGPAVSRLMESEIKSVIVTNTIPQEDKMAQCPKIKLIDISPILAEAI
RRTHNGESVSYLFSHVPL
Run BLAST on NCBI

transcript from alignment at scaffold_20:40198..47704-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051222 ID=TCONS_00051222|Name=TCONS_00051222|organism=Clytia hemisphaerica|type=transcript|length=7507bp|location=Sequence derived from alignment at scaffold_20:40198..47704- (Clytia hemisphaerica)
CCTCGCTTGGTGTAGAGAGCCTGGTCCGATTTGAAAGTATAAATCTTGCA
AAATAACACTTCTCGAAATCATTCCAGGCCGTCCAGACGGACTTCACTGA
CTGTGATTTTTGAAAGTCAAATATTGAACTTTTACATTTCTTGGAGATTT
AACTTTGTTTATTTTGGTTATAAAGCACAAGCAAAGATGCCAAACATTAA
GATTTTCAGTGGTAGCTCTCACATGGACTTGGCCAGGCTGGTTGCAGAGA
GGTTGAACATGGAAATGGGTCGTGTCAAACTGAGGAAATTCTCCAACAAG
GAAACTAGGTATAAATGTGATTTCTGCAGGTACTTTCGGTAGTTTTTGTT
TAGGATACTTTGGATTTTGTCAGGGCAAAGGGGTAGATTTTACTTAGTTT
TCTAGCTTACTTTTTTTTTATCTAGCGTGGAAGTTGGTGAGTCAGTTCGA
GGTGAGGATGTTTATATCATTCAAAGTGGATGTGGAGATATCAACGATAA
CTTGATGGAATTGCTCATCATGATCAATGCATGCAAAATTGCATCTGCTG
CTAGAGTTACAGCTGTCATTCCTTGCTTCCCTTATGCACGTCAAGATAAG
AAAGACAAGGTATACTTTTAGAGATTATGAGTTGTGATTTCTGCCTTGTT
TGAACTGCCGATTTAATAATAAAATGCAGTGGGGAAGTCCTGTTGTGATA
CCGTGAGATCAGGTAACTTGCATCAGTGGAGGCAAACATGCATAGCCCTC
AAATGAATGACCTGTCTGGTCATTAAATACAACTACGCAGCTCCGCTCGC
AGCTCTACTCTACCATTTTCGTTTTGATTTAAATTTGTATTTTAATGACC
AGCCAAGTCTTTCATTTGAGGGCTATGCATGTTAGCCTCCACTGATGCAA
TTTACCCGATCTCACGGTACTAAAACACTGAATACCTTGTTAAGGGAACT
TATTTTGGCTGTAACTAATTTTGGCAAATTCGATGAATTTAGGTGGCCAT
CGCAAAAATAGTTCTGTTCGTGTCACAACAGGTGTTAAAAATGTGGGCGG
ACGGGCAGTCGAAAAAATTCCCGTTTTTTTTTAATCGCTTCTGTAAGTCA
AGAAAAAAGCTATACGTCAAAAGAATTTGCTTTTTCCAGATTTTTTCCCG
CATCTCCGCACCAGAAAATCAGGGGAAACTATGATGCGGGCGGGTGACGT
GAATAGAACAATTTTTCAATGGTCGCCCTAGACAAAATTCGCCAAAATTA
GTTCCTGTCAAAATTAAATATTTGGTAATTTACCTAAATAACTTCTTGAG
TTCACAAAGAAAGCTTCAAATAAGACAAAATAGAACAAATTTACGCTGTC
ATCCGCCAAAATTAGTTCCCCCACCAAAATTTAAAAAATTCATCAATCGC
CAGCAATCGCCAAAAAATTCTCACCAAAATTAAAAATTTTAAGGATTTTT
GCCGCTCGTCAAAATTAGTTCCCGCCAAAATAGTTCCCTTAAGGTATATA
TTGCAAAAACTTTGGTGAACACAATGATATCATCAAGTACATAAATTTTT
TCTCTGAATAAATATGAATTTTCTTCAACTTTTGAGCAAAATCTTCAAGT
TTTTTTAAGATCAGGTTTTCAACGATTTCAGATATTAACTTTTGAAAAAT
TCATTGACTCCTACCTAGGGGTTCTATTTTTTGCGGGAACTAATTTTCTC
TGTGCGAGGGTACTAAATTGGCACATTTTGCAGAACTAATTTTCGTGGTT
GACACACTCTTTTTGCTGAAATTCTTTCATGTTCCTAGAAGTTTTGGAGG
ATTTTCAGTAAAATTGCATTTGGCAACACGAATTTTTGTGGTAGACGTCA
AATTTTATTTGGGTCAATTTTTGCTACAAATCTGAATTTCTATCTATCTA
TCTATCTATCTATTATGGTTGAGTTACAAGAGGCTCTGGGAGCCCATTCT
CGCAACTATAGATGCTTTGAGTAAGCATCCTGTCAGCAACTTGAACTGAC
TACCCAATTCCCCTCACATGGCATGGGTTAACCCAGACAAAGGTTTGTTC
ACTTGCCAAGTGAACTGGTGTGAGTGGGAATCAAACCTTGGTCGCCCATG
CAGTAAGTTACAATTTCATTGTTTAGAGAAAAACAGAAAAATCGAGAATG
CAAAAACTGTGATATAAGTATTTTCAAGTTGCAAATCTTTTCTTTTCTGT
TACAGAGCAGAGCACCAATTTCGGCCAAACTTGTTGCAAACATGCTCTCT
GTTGCTGGAGCTGACCATATCATCACTATGGACCTACATGCTTCTCAAAT
TCAGGTGTGGTATTTAATAAAATTTATTGTTGTGTTTATCTATGTAATCA
TTGTCAAGGCATCTCAGTCCTTTTTCCAATAATGAAAAGCCTAATCCGAT
AACATTTTTATTGAGATATTAATAAACTTCAGTGCAACTTGCAAAGAGCA
AAATAAAAGTATTCTTCTACTCATTGCTTTTATTTGAATCTTTACGTTTA
CATTTTCAGGGATTCTTTGACATTCCTGTTGACAATTTGTTTGCTGAGCC
AGCGGTACTGAAGTACATAAGAGAAAATCTTCCTGATTGGGAACAGTGTG
TTATTGTCTCACCAGATGCTGGGGGTGCCAAACGTGTCACGTCTATTGCT
GATCAACTGAATGTGGAATTTGCACTTATTCACAAAGAGGTAAAATATAT
TCAAAGAATGTCATCATCCACCTGTATCCAAAGTGCTTGGCCAATTTGTA
GAATGAAAGGGCAGCATCTGCTAGAGGGAAATTTTTTGTTTTTATCATCA
TTTTCATAATTAACAAAGGGCAGTGTCCAACGACCATATACTAAAATTGT
CATAAAAATGGTCTTCGTGCTGCTTCGTGCTTCAATTAATTTTTTTGTAA
ACCTAAAAACTTTAGACTCTTATCAGAGGAGTGGTTAAAAATTCAAATTA
CAATGCCTTGGAACTCTATCTTTTCTATTTCTGTACAATGTTTCTACTTT
ATTCACTTCACTCTTTTCTTTATAGGTGGTTTTTGGCTCTTAAAATTCTC
TCTTTGTCATTCTAAAATACTATAACTTTTCGAAATAGTTGAATGAAAAG
AAAGGGGGAAATATGGAATTTGTTTCGTTTGTAAAAGGCTCTTATGGTAG
GTAAAACCTTACACAGAAAGTTAGATATATGATAAGCTAATGTGTTAAAG
TATTATAAGATTCCAAAATACGTGTAATACTTAAGTGCTTAGCCTATCAT
ATATGTAACTTGACTTTCTATTTTTTGTTGTATTGAAAATGTGATTTTCT
TTTCTCTATAAAGAGGAAAAAAGCCAATGAAGTGGATAGCATGGTTCTCG
TTGGAAACGTGACTGATAAAGTAGCGGTCCTAGTTGATGATATGGCAGAT
ACCTGTGGAACTATGAAGTTGGCTGCAAAAAAGTATTTCATTTATACTAT
GTTTGATTATATAGTAACCTTGCTCAGCTCGAATTGCCTATCTTTTGTGG
TTATTCTGATTGCCTTTTGAAACAGTTTGAAATAAAATAAAAATTGAGGT
ACAATTTCATAAGTATAATCCAGTTTTGGACTTATCAAAATACACTGGAA
TAAAAAGATGCACTTTTTGGTTTTTGATAGAGTTAAGATTTCGATGTATT
GGCTTTATCAGCTGAAAATTTTTTAAATCCGGTTAAAAGTCGTATGTCAT
TTCACAATTTTCGTCTAACGTTCGTTTAAGATTTCAGGTTTTAGTGTTGA
TAACCTTGCACTATTTCACAACTTTCAGGTTGAACGAAGCTGGTGCAAAA
GAAGTATACTGTATATTCACGCATGGTATCTTATCGGGTCCTGCTGTATC
TCGTTTGATGGAATCTGAAATCAAATCCGTCATCGTTACCAATACGATAC
CCCAAGAAGACAAGATGGCACAATGCCCAAAAATCAAGGTATAGTATTGA
CTGATTTAATAACCCGAAGGGATAGATCAGTGGTAGGATTTTCTACTCGT
CAAGTTATCGTCACAAAATTTTTAAAAGTTTACTGGGGAAGTAGCATACC
TAGCTCTTAGAGCCTGATTAATATCTCTATCAGATGGTCTCTTTTTGTCA
AGACGAATGAGTTCCATAAAAGCACTAGTATGTTATCGAATCGGGATTAG
ATTTGTTTTCGATAAACAAATAAAACACTATTTTTATGTACTCTAATTTT
AGCCTTTACTAAGCGTTTCTGACTAAAATCAAAGTATCTGCTTCATACAT
TGTTCCTTGGCTACAAATGAGAATCATCAGCTGTCCAAATTTGTAATCCA
GATAAAAGATAATCTACTGACATCATTGTGGTCAAAGTTAACAAAAAGGA
TAATTGAATGAAACCGAGCAACTGACGTATTGAGTTAATAACTTTCAACT
TGTTTTGTTCTTTTAGCTAATTGATATTTCACCCATCCTTGCTGAGGCAA
TCCGAAGGACGCATAATGGCGAGTCAGTTTCATATTTGTTCAGTCATGTT
CCTCTATGAGTAACAAAAGAGTCATATGAAACTATGTATTGCATGCACCC
TTGACTTTCAAGTATGGACATCCACTCTAGTTTTCGTACAGCTAGAAGCT
CTCACTCGAGCGTAATATTAGAAGAGCTTGACAAAGATGCTCTGTCATAA
AATGACTGATTGACATTAAATTGACACATTACTAACACTGACATTAACTG
AGTTCAACTTTGTGTAATATAAGGTGGAGCCTGTCTTCGCCGCATAATAA
TTTATAAATAGCTTTTGTTTTTTAAAAGTTGTTCCCCTCGCATTGTACAA
AATAGTGTTGTTAATGATTTTTTTTTCTTAATGATAGTTCAGCAACGTGC
ATCGTACTAGAAGTATGTTCATGCCGTTCTAGGTTCTTAGAGAATTTGTA
GTTTTTTTCAGATTAAAATTTTCACCCGAATTTGTGTTCAATCGAGTGTT
GAGAGAAAAAGAGAGACAAATTTATTATTTAAATTCGTTTTATAATGAGA
TTTTATTAACGTTTTAAAATTGAAAATACATCAACATTGCTGGACACTAT
AGAAATCATCGACCATCTCTTTTTCTTTGGATTTGACTTTATTTGAATTA
GGGTTATCATGAACAAGGGTGCGATCATGATTGTGAAATATCATGTCAAT
ACCACTTCACCCTACTGAGAATGGGAAATCTACCACTGGGCTTCAGATTA
CATTAATTCTGTGTTAATCCCTTATATTTGCAAATAGTATATCACGCCAC
TTTTATTTACTAGTTTTTTTTCAACTACAGTATAATCACATGGCAACCTA
TTCGATTGCAATGAAAATATGCCTTGTGCTTGAGCCTTTTTGAATGTATA
TCGTGTTACCTCGACCTATTATATTTCTTTTGCAAATCTTAATAACAAAG
ATTGCAGGTGAACTTTTTTTTTGATTGAATTTTAGCACTCTTTGTAATTG
GACCACCCTCTGGTATTGATAAAATTTTTCACATTAACATGAAAGCGCAT
TGAAATTAGTCTGGGAATATGTGAAATTAAAGTTTGAGCTCTACTAGATG
AAAACAATTTAAGTGGTCTGTCGGCTATCTTTAGAACTACTAGTACAAAT
TTTAGCAAAGTCCACTTCAATTTAACTTGACACTTTTCCAGGTATTGGAA
ACTAAGCAAACTGCTACGTAACAAAGAAACAAGAGCCGCAAAGATGCGGA
TAAATATTTCCTTTACAAATGTTAAAATAATAATTGATGTCCTCAAAAGA
TTTCAAAGTGCTTTAAATCTCANTAGCATGGTTCTCGTTGGAAACGTGAC
TGATAAAGTAGCGGTCCTAGTTGATGATATGGCAGATACCTGTGGAACTA
TGAAGTTGGCTGCAAAAAAGTATTTCATTTATACTATGTTTGATTATATA
GTAACCTTGCTCAGCTCGAATTGCCTATCTTTTGTGGTTATTCTGATTGC
CTTTTGAAACAGTTTGAAATAAAATAAAAATTGAGGTACAATTTCATAAG
TATAATCCAGTTTTGGACTTATCAAAATACACTGGAATAAAAAGATGCAC
TTTTTGGTTTTTGATAGAGTTAAGATTTCGATGTATTGGCTTTATCAGCT
GAAAATTTTTTAAATCCGGTTAAAAGTCGTATGTCATTTCACAATTTTCG
TGTAACGTTTGTTTAAGATTTCAGATTTTAGTGTTGATAACATCTCTAAA
AAAACCTTGCACTATTTCACAACTATCAGGTTGAACGAAGCTGGTGCAAA
AGAAGTATACTGTATATTCACGCATGGTATCTTATCGGGTCCTGCTGTAT
CTCGTTTGATGGAATCTGAAATCAAATCCGTCATCGTTACCAATACGATA
CCCCAAGAAGACAAGATGGCACAATGCCCAAAAATCAAGGTATAGTATTG
ACTGATTTAATAACCCGAAGGGATAGATCAGTGGTAGGATTTTCTACTCG
TCAAGTTATCGTCACAAAATTTTTAAAAGTTTACTGGGGAAGTAGCATAC
CTAGCTCTTAGAGCCTGATTAATATCTCTATCAGATGGTCTCTTTTTGTC
AAGACGAATGAGTTCCATAAAAGCACTAGTATGTTATCGAATCGGGATTA
GATTTGTTTTCGATAAACAAATAAAACACTATTTTTATGTACTCTAATTT
TAGCCTTTACTAAGCGTTTCTGACTAAAATCAAAGTATCTGCTTCATACA
TTGTTCCTTGGCTACAAATGAGAATCATCAGCTGTCCAAATTTGTAATCC
AGATAAAAGATAATCTACTGACATCATTGTGGTCAAAGTTAACAAAAAGG
ATAATTGAATGAAACCGAGCAACTGACGTATTGAGTTAATAACTTTCAAC
TTGTTTTGTTCTTTTAGCTAATTGATATTTCACCCATCCTTGCTGAGGCA
ATCCGAAGGACGCATAATGGCGAGTCAGTTTCATATTTGTTCAGTCATGT
TCCTCTATGAGTAACAAAAGAGTCATATGAAACTATGTATTGCATGCACC
CTTGACTTTCAAGTATGGACATCCACTCTAGTTTTCGTACAGCTAGAAGC
TCTCACTCGAGCGTAATATTAGAAGAGCTTGACAAAGATGCTCTGTCATA
AAATGACTGATTGACATTAAATTGACACATTACTAACACTGACATTAACT
GAGTTCAACTTTGTGTAATATAAGGTGGAGCCTGTCTTCGCCGCATAATA
ATTTATAAATAGCTTTTGTTTTTTAAAAGTTGTTCCCCTCGCATTGTACA
AAATAGTGTTGTTAATGATTTTTTTTCTTAATGATAGTTCAGCAACGTGC
ATCGTACTAGAAGTATGTTCATGCCGTTCTAGGTTCTTAGAGAATTTGTA
GTTTTTTTCAGATTAAAATTTTCACCCGAATTTGTGTTCAATCGAGTGTT
GAGAGAAAAAGAGAGACAAATTTATTATTTAAATTCGTTTTATAATGAGA
TTTTATTAACGTTTTAAAATTGAAAATACATCAACATTGCTGGACACTAT
AGAAATC

Coding sequence (CDS) from alignment at scaffold_20:40198..47704-

>TCONS_00051222 ID=TCONS_00051222|Name=TCONS_00051222|organism=Clytia hemisphaerica|type=CDS|length=6699bp|location=Sequence derived from alignment at scaffold_20:40198..47704- (Clytia hemisphaerica)
CTAATTGATATTTCACCCATCCTTGCTGAGGCAATCCGAAGGACGCATAA
TGGCGAGTCAGTTTCATATTTGTTCAGTCATGTTCCTCTATGAGTTGAAC
GAAGCTGGTGCAAAAGAAGTATACTGTATATTCACGCATGGTATCTTATC
GGGTCCTGCTGTATCTCGTTTGATGGAATCTGAAATCAAATCCGTCATCG
TTACCAATACGATACCCCAAGAAGACAAGATGGCACAATGCCCAAAAATC
AAGAGGAAAAAAGCCAATGAAGTGGATAGCATGGTTCTCGTTGGAAACGT
GACTGATAAAGTAGCGGTCCTAGTTGATGATATGGCAGATACCTGTGGAA
CTATGAAGTTGGCTGCAAAAAAGGATTCTTTGACATTCCTGTTGACAATT
TGTTTGCTGAGCCAGCGGTACTGAAGTACATAAGAGAAAATCTTCCTGAT
TGGGAACAGTGTGTTATTGTCTCACCAGATGCTGGGGGTGCCAAACGTGT
CACGTCTATTGCTGATCAACTGAATGTGGAATTTGCACTTATTCACAAAG
AGAGCAGAGCACCAATTTCGGCCAAACTTGTTGCAAACATGCTCTCTGTT
GCTGGAGCTGACCATATCATCACTATGGACCTACATGCTTCTCAAATTCA
GCGTGGAAGTTGGTGAGTCAGTTCGAGGTGAGGATGTTTATATCATTCAA
AGTGGATGTGGAGATATCAACGATAACTTGATGGAATTGCTCATCATGAT
CAATGCATGCAAAATTGCATCTGCTGCTAGAGTTACAGCTGTCATTCCTT
GCTTCCCTTATGCACGTCAAGATAAGAAAGACAAGATGCCAAACATTAAG
ATTTTCAGTGGTAGCTCTCACATGGACTTGGCCAGGCTGGTTGCAGAGAG
GTTGAACATGGAAATGGGTCGTGTCAAACTGAGGAAATTCTCCAACAAGG
AAACTAGCTAATTGATATTTCACCCATCCTTGCTGAGGCAATCCGAAGGA
CGCATAATGGCGAGTCAGTTTCATATTTGTTCAGTCATGTTCCTCTATGA
GTTGAACGAAGCTGGTGCAAAAGAAGTATACTGTATATTCACGCATGGTA
TCTTATCGGGTCCTGCTGTATCTCGTTTGATGGAATCTGAAATCAAATCC
GTCATCGTTACCAATACGATACCCCAAGAAGACAAGATGGCACAATGCCC
AAAAATCAAGAGGAAAAAAGCCAATGAAGTGGATAGCATGGTTCTCGTTG
GAAACGTGACTGATAAAGTAGCGGTCCTAGTTGATGATATGGCAGATACC
TGTGGAACTATGAAGTTGGCTGCAAAAAAGGATTCTTTGACATTCCTGTT
GACAATTTGTTTGCTGAGCCAGCGGTACTGAAGTACATAAGAGAAAATCT
TCCTGATTGGGAACAGTGTGTTATTGTCTCACCAGATGCTGGGGGTGCCA
AACGTGTCACGTCTATTGCTGATCAACTGAATGTGGAATTTGCACTTATT
CACAAAGAGAGCAGAGCACCAATTTCGGCCAAACTTGTTGCAAACATGCT
CTCTGTTGCTGGAGCTGACCATATCATCACTATGGACCTACATGCTTCTC
AAATTCAGCGTGGAAGTTGGTGAGTCAGTTCGAGGTGAGGATGTTTATAT
CATTCAAAGTGGATGTGGAGATATCAACGATAACTTGATGGAATTGCTCA
TCATGATCAATGCATGCAAAATTGCATCTGCTGCTAGAGTTACAGCTGTC
ATTCCTTGCTTCCCTTATGCACGTCAAGATAAGAAAGACAAGATGCCAAA
CATTAAGATTTTCAGTGGTAGCTCTCACATGGACTTGGCCAGGCTGGTTG
CAGAGAGGTTGAACATGGAAATGGGTCGTGTCAAACTGAGGAAATTCTCC
AACAAGGAAACTAGCTAATTGATATTTCACCCATCCTTGCTGAGGCAATC
CGAAGGACGCATAATGGCGAGTCAGTTTCATATTTGTTCAGTCATGTTCC
TCTATGAGTTGAACGAAGCTGGTGCAAAAGAAGTATACTGTATATTCACG
CATGGTATCTTATCGGGTCCTGCTGTATCTCGTTTGATGGAATCTGAAAT
CAAATCCGTCATCGTTACCAATACGATACCCCAAGAAGACAAGATGGCAC
AATGCCCAAAAATCAAGAGGAAAAAAGCCAATGAAGTGGATAGCATGGTT
CTCGTTGGAAACGTGACTGATAAAGTAGCGGTCCTAGTTGATGATATGGC
AGATACCTGTGGAACTATGAAGTTGGCTGCAAAAAAGGATTCTTTGACAT
TCCTGTTGACAATTTGTTTGCTGAGCCAGCGGTACTGAAGTACATAAGAG
AAAATCTTCCTGATTGGGAACAGTGTGTTATTGTCTCACCAGATGCTGGG
GGTGCCAAACGTGTCACGTCTATTGCTGATCAACTGAATGTGGAATTTGC
ACTTATTCACAAAGAGAGCAGAGCACCAATTTCGGCCAAACTTGTTGCAA
ACATGCTCTCTGTTGCTGGAGCTGACCATATCATCACTATGGACCTACAT
GCTTCTCAAATTCAGCGTGGAAGTTGGTGAGTCAGTTCGAGGTGAGGATG
TTTATATCATTCAAAGTGGATGTGGAGATATCAACGATAACTTGATGGAA
TTGCTCATCATGATCAATGCATGCAAAATTGCATCTGCTGCTAGAGTTAC
AGCTGTCATTCCTTGCTTCCCTTATGCACGTCAAGATAAGAAAGACAAGA
TGCCAAACATTAAGATTTTCAGTGGTAGCTCTCACATGGACTTGGCCAGG
CTGGTTGCAGAGAGGTTGAACATGGAAATGGGTCGTGTCAAACTGAGGAA
ATTCTCCAACAAGGAAACTAGCTAATTGATATTTCACCCATCCTTGCTGA
GGCAATCCGAAGGACGCATAATGGCGAGTCAGTTTCATATTTGTTCAGTC
ATGTTCCTCTATGAGTTGAACGAAGCTGGTGCAAAAGAAGTATACTGTAT
ATTCACGCATGGTATCTTATCGGGTCCTGCTGTATCTCGTTTGATGGAAT
CTGAAATCAAATCCGTCATCGTTACCAATACGATACCCCAAGAAGACAAG
ATGGCACAATGCCCAAAAATCAAGAGGAAAAAAGCCAATGAAGTGGATAG
CATGGTTCTCGTTGGAAACGTGACTGATAAAGTAGCGGTCCTAGTTGATG
ATATGGCAGATACCTGTGGAACTATGAAGTTGGCTGCAAAAAAGGATTCT
TTGACATTCCTGTTGACAATTTGTTTGCTGAGCCAGCGGTACTGAAGTAC
ATAAGAGAAAATCTTCCTGATTGGGAACAGTGTGTTATTGTCTCACCAGA
TGCTGGGGGTGCCAAACGTGTCACGTCTATTGCTGATCAACTGAATGTGG
AATTTGCACTTATTCACAAAGAGAGCAGAGCACCAATTTCGGCCAAACTT
GTTGCAAACATGCTCTCTGTTGCTGGAGCTGACCATATCATCACTATGGA
CCTACATGCTTCTCAAATTCAGCGTGGAAGTTGGTGAGTCAGTTCGAGGT
GAGGATGTTTATATCATTCAAAGTGGATGTGGAGATATCAACGATAACTT
GATGGAATTGCTCATCATGATCAATGCATGCAAAATTGCATCTGCTGCTA
GAGTTACAGCTGTCATTCCTTGCTTCCCTTATGCACGTCAAGATAAGAAA
GACAAGATGCCAAACATTAAGATTTTCAGTGGTAGCTCTCACATGGACTT
GGCCAGGCTGGTTGCAGAGAGGTTGAACATGGAAATGGGTCGTGTCAAAC
TGAGGAAATTCTCCAACAAGGAAACTAGCTAATTGATATTTCACCCATCC
TTGCTGAGGCAATCCGAAGGACGCATAATGGCGAGTCAGTTTCATATTTG
TTCAGTCATGTTCCTCTATGAGTTGAACGAAGCTGGTGCAAAAGAAGTAT
ACTGTATATTCACGCATGGTATCTTATCGGGTCCTGCTGTATCTCGTTTG
ATGGAATCTGAAATCAAATCCGTCATCGTTACCAATACGATACCCCAAGA
AGACAAGATGGCACAATGCCCAAAAATCAAGAGGAAAAAAGCCAATGAAG
TGGATAGCATGGTTCTCGTTGGAAACGTGACTGATAAAGTAGCGGTCCTA
GTTGATGATATGGCAGATACCTGTGGAACTATGAAGTTGGCTGCAAAAAA
GGATTCTTTGACATTCCTGTTGACAATTTGTTTGCTGAGCCAGCGGTACT
GAAGTACATAAGAGAAAATCTTCCTGATTGGGAACAGTGTGTTATTGTCT
CACCAGATGCTGGGGGTGCCAAACGTGTCACGTCTATTGCTGATCAACTG
AATGTGGAATTTGCACTTATTCACAAAGAGAGCAGAGCACCAATTTCGGC
CAAACTTGTTGCAAACATGCTCTCTGTTGCTGGAGCTGACCATATCATCA
CTATGGACCTACATGCTTCTCAAATTCAGCGTGGAAGTTGGTGAGTCAGT
TCGAGGTGAGGATGTTTATATCATTCAAAGTGGATGTGGAGATATCAACG
ATAACTTGATGGAATTGCTCATCATGATCAATGCATGCAAAATTGCATCT
GCTGCTAGAGTTACAGCTGTCATTCCTTGCTTCCCTTATGCACGTCAAGA
TAAGAAAGACAAGATGCCAAACATTAAGATTTTCAGTGGTAGCTCTCACA
TGGACTTGGCCAGGCTGGTTGCAGAGAGGTTGAACATGGAAATGGGTCGT
GTCAAACTGAGGAAATTCTCCAACAAGGAAACTAGCTAATTGATATTTCA
CCCATCCTTGCTGAGGCAATCCGAAGGACGCATAATGGCGAGTCAGTTTC
ATATTTGTTCAGTCATGTTCCTCTATGAGTTGAACGAAGCTGGTGCAAAA
GAAGTATACTGTATATTCACGCATGGTATCTTATCGGGTCCTGCTGTATC
TCGTTTGATGGAATCTGAAATCAAATCCGTCATCGTTACCAATACGATAC
CCCAAGAAGACAAGATGGCACAATGCCCAAAAATCAAGAGGAAAAAAGCC
AATGAAGTGGATAGCATGGTTCTCGTTGGAAACGTGACTGATAAAGTAGC
GGTCCTAGTTGATGATATGGCAGATACCTGTGGAACTATGAAGTTGGCTG
CAAAAAAGGATTCTTTGACATTCCTGTTGACAATTTGTTTGCTGAGCCAG
CGGTACTGAAGTACATAAGAGAAAATCTTCCTGATTGGGAACAGTGTGTT
ATTGTCTCACCAGATGCTGGGGGTGCCAAACGTGTCACGTCTATTGCTGA
TCAACTGAATGTGGAATTTGCACTTATTCACAAAGAGAGCAGAGCACCAA
TTTCGGCCAAACTTGTTGCAAACATGCTCTCTGTTGCTGGAGCTGACCAT
ATCATCACTATGGACCTACATGCTTCTCAAATTCAGCGTGGAAGTTGGTG
AGTCAGTTCGAGGTGAGGATGTTTATATCATTCAAAGTGGATGTGGAGAT
ATCAACGATAACTTGATGGAATTGCTCATCATGATCAATGCATGCAAAAT
TGCATCTGCTGCTAGAGTTACAGCTGTCATTCCTTGCTTCCCTTATGCAC
GTCAAGATAAGAAAGACAAGATGCCAAACATTAAGATTTTCAGTGGTAGC
TCTCACATGGACTTGGCCAGGCTGGTTGCAGAGAGGTTGAACATGGAAAT
GGGTCGTGTCAAACTGAGGAAATTCTCCAACAAGGAAACTAGCTAATTGA
TATTTCACCCATCCTTGCTGAGGCAATCCGAAGGACGCATAATGGCGAGT
CAGTTTCATATTTGTTCAGTCATGTTCCTCTATGAGTTGAACGAAGCTGG
TGCAAAAGAAGTATACTGTATATTCACGCATGGTATCTTATCGGGTCCTG
CTGTATCTCGTTTGATGGAATCTGAAATCAAATCCGTCATCGTTACCAAT
ACGATACCCCAAGAAGACAAGATGGCACAATGCCCAAAAATCAAGAGGAA
AAAAGCCAATGAAGTGGATAGCATGGTTCTCGTTGGAAACGTGACTGATA
AAGTAGCGGTCCTAGTTGATGATATGGCAGATACCTGTGGAACTATGAAG
TTGGCTGCAAAAAAGGATTCTTTGACATTCCTGTTGACAATTTGTTTGCT
GAGCCAGCGGTACTGAAGTACATAAGAGAAAATCTTCCTGATTGGGAACA
GTGTGTTATTGTCTCACCAGATGCTGGGGGTGCCAAACGTGTCACGTCTA
TTGCTGATCAACTGAATGTGGAATTTGCACTTATTCACAAAGAGAGCAGA
GCACCAATTTCGGCCAAACTTGTTGCAAACATGCTCTCTGTTGCTGGAGC
TGACCATATCATCACTATGGACCTACATGCTTCTCAAATTCAGCGTGGAA
GTTGGTGAGTCAGTTCGAGGTGAGGATGTTTATATCATTCAAAGTGGATG
TGGAGATATCAACGATAACTTGATGGAATTGCTCATCATGATCAATGCAT
GCAAAATTGCATCTGCTGCTAGAGTTACAGCTGTCATTCCTTGCTTCCCT
TATGCACGTCAAGATAAGAAAGACAAGATGCCAAACATTAAGATTTTCAG
TGGTAGCTCTCACATGGACTTGGCCAGGCTGGTTGCAGAGAGGTTGAACA
TGGAAATGGGTCGTGTCAAACTGAGGAAATTCTCCAACAAGGAAACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032470XLOC_032470Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051222-proteinTCONS_00051222-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051222-exon-scaffold_20-1575043694:47397..47704TCONS_00051222-exon-scaffold_20-1575043694:47397..47704Clytia hemisphaericaexon
TCONS_00051222-exon-scaffold_20-1575043694:47096..47279TCONS_00051222-exon-scaffold_20-1575043694:47096..47279Clytia hemisphaericaexon
TCONS_00051222-exon-scaffold_20-1575043694:45401..45499TCONS_00051222-exon-scaffold_20-1575043694:45401..45499Clytia hemisphaericaexon
TCONS_00051222-exon-scaffold_20-1575043694:45016..45195TCONS_00051222-exon-scaffold_20-1575043694:45016..45195Clytia hemisphaericaexon
TCONS_00051222-exon-scaffold_20-1575043694:44273..44391TCONS_00051222-exon-scaffold_20-1575043694:44273..44391Clytia hemisphaericaexon
TCONS_00051222-exon-scaffold_20-1575043694:43767..43926TCONS_00051222-exon-scaffold_20-1575043694:43767..43926Clytia hemisphaericaexon
TCONS_00051222-exon-scaffold_20-1575043694:40198..40837TCONS_00051222-exon-scaffold_20-1575043694:40198..40837Clytia hemisphaericaexon
TCONS_00051222-exon-scaffold_20-1510915933:47397..47704TCONS_00051222-exon-scaffold_20-1510915933:47397..47704Clytia hemisphaericaexon
TCONS_00051222-exon-scaffold_20-1510915933:47096..47279TCONS_00051222-exon-scaffold_20-1510915933:47096..47279Clytia hemisphaericaexon
TCONS_00051222-exon-scaffold_20-1510915933:45401..45499TCONS_00051222-exon-scaffold_20-1510915933:45401..45499Clytia hemisphaericaexon
TCONS_00051222-exon-scaffold_20-1510915933:45016..45195TCONS_00051222-exon-scaffold_20-1510915933:45016..45195Clytia hemisphaericaexon
TCONS_00051222-exon-scaffold_20-1510915933:44273..44391TCONS_00051222-exon-scaffold_20-1510915933:44273..44391Clytia hemisphaericaexon
TCONS_00051222-exon-scaffold_20-1510915933:43767..43926TCONS_00051222-exon-scaffold_20-1510915933:43767..43926Clytia hemisphaericaexon
TCONS_00051222-exon-scaffold_20-1510915933:40198..40837TCONS_00051222-exon-scaffold_20-1510915933:40198..40837Clytia hemisphaericaexon
TCONS_00051222-exon-scaffold_20-1491911889:47397..47704TCONS_00051222-exon-scaffold_20-1491911889:47397..47704Clytia hemisphaericaexon
TCONS_00051222-exon-scaffold_20-1491911889:47096..47279TCONS_00051222-exon-scaffold_20-1491911889:47096..47279Clytia hemisphaericaexon
TCONS_00051222-exon-scaffold_20-1491911889:45401..45499TCONS_00051222-exon-scaffold_20-1491911889:45401..45499Clytia hemisphaericaexon
TCONS_00051222-exon-scaffold_20-1491911889:45016..45195TCONS_00051222-exon-scaffold_20-1491911889:45016..45195Clytia hemisphaericaexon
TCONS_00051222-exon-scaffold_20-1491911889:44273..44391TCONS_00051222-exon-scaffold_20-1491911889:44273..44391Clytia hemisphaericaexon
TCONS_00051222-exon-scaffold_20-1491911889:43767..43926TCONS_00051222-exon-scaffold_20-1491911889:43767..43926Clytia hemisphaericaexon
TCONS_00051222-exon-scaffold_20-1491911889:40198..40837TCONS_00051222-exon-scaffold_20-1491911889:40198..40837Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:40198..47704 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.64213	19.5714	8.9546	4.72817	87.7008	32.399	112.509	102.54	72.0777	73.0303	65.8178	72.9722	40.2811	29.8545	19.5397	32.2986	21.919	29.5578	19.541	16.707	64.5688	60.015	81.799	52.7994	27.4617	18.315	197.752	197.65	163.352	121.249
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029099Pribosyltran_N
IPR005946Rib-P_diPkinase
IPR000842PRib_PP_synth_CS
IPR000836PRibTrfase_dom
IPR029057PRTase-like
Vocabulary: Molecular Function
TermDefinition
GO:0000287magnesium ion binding
GO:0004749ribose phosphate diphosphokinase activity
Vocabulary: Biological Process
TermDefinition
GO:0009165nucleotide biosynthetic process
GO:0009156ribonucleoside monophosphate biosynthetic process
GO:0044249cellular biosynthetic process
GO:0009116nucleoside metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044249 cellular biosynthetic process
biological_process GO:0009116 nucleoside metabolic process
biological_process GO:0009165 nucleotide biosynthetic process
biological_process GO:0009156 ribonucleoside monophosphate biosynthetic process
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0004749 ribose phosphate diphosphokinase activity
Blast
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BLAST of TCONS_00051222 vs. Swiss-Prot (Human)
Match: PRPS2 (Ribose-phosphate pyrophosphokinase 2 OS=Homo sapiens GN=PRPS2 PE=1 SV=2)

HSP 1 Score: 542.347 bits (1396), Expect = 0.000e+0
Identity = 257/318 (80.82%), Postives = 291/318 (91.51%), Query Frame = 1 
Query:  187 MPNIKIFSGSSHMDLARLVAERLNMEMGRVKLRKFSNKETSVEVGESVRGEDVYIIQSGCGDINDNLMELLIMINACKIASAARVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLFAEPAVLKYIRENLPDWEQCVIVSPDAGGAKRVTSIADQLNVEFALIHKERKKANEVDSMVLVGNVTDKVAVLVDDMADTCGTMKLAAKKLNEAGAKEVYCIFTHGILSGPAVSRLMESEIKSVIVTNTIPQEDKMAQCPKIKLIDISPILAEAIRRTHNGESVSYLFSHVPL 1140
            MPNI +FSGSSH DL++ VA+RL +E+G+V  +KFSN+ETSVE+GESVRGEDVYIIQSGCG+INDNLMELLIMINACKIAS++RVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNL+AEPAVL++IREN+ +W+ C+IVSPDAGGAKRVTSIAD+LNVEFALIHKERKKANEVD MVLVG+V D+VA+LVDDMADTCGT+  AA KL  AGA +VY I THGI SGPA+SR+  +  ++V+VTNTIPQEDKM  C KI++IDIS ILAEAIRRTHNGESVSYLFSHVPL
Sbjct:    1 MPNIVLFSGSSHQDLSQRVADRLGLELGKVVTKKFSNQETSVEIGESVRGEDVYIIQSGCGEINDNLMELLIMINACKIASSSRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLQWIRENIAEWKNCIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVDRMVLVGDVKDRVAILVDDMADTCGTICHAADKLLSAGATKVYAILTHGIFSGPAISRINNAAFEAVVVTNTIPQEDKMKHCTKIQVIDISMILAEAIRRTHNGESVSYLFSHVPL 318
The following BLAST results are available for this feature:
BLAST of TCONS_00051222 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRPS20.000e+080.82Ribose-phosphate pyrophosphokinase 2 OS=Homo sapie... [more]
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