TCONS_00051232 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00051232
Unique Name	TCONS_00051232
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2609

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_20:83308..89233-
coding sequence from alignment at scaffold_20:83308..89233-

transcript sequence

>TCONS_00051232 ID=TCONS_00051232|Name=TCONS_00051232|organism=Clytia hemisphaerica|type=transcript|length=2609bp
TAGAAACTTGAAATAACAAGAATAAAAGAAATGGGTGAAGAGGAAATTGT
CCCTAATGATGTTGATTCTGAAGAAAATTCTGAAGATGAGATTtctgatg
aagatgaagaagagaTCAGTGATTTGGATGATGAAAGTGACGATGATCTT
GACCAGGTTGTTGAACAGCCCGATGATGATGAAATTGCCAAAACAAAACC
AGCTAGAATTAAGGTAACAGATACTATTTTTGAAGCAGCCTTCCACCCAT
CAAAGGATATCCTTGCGGTTGGAGAGATTACTGGCACTCACTTGATTCGC
TGCCAGGATGACTGCATTTGAATGATTTGGTCAATGATGGTGAAGATATG
AAAAGTATTTTGTTATGAGCCGAGGTGGAGGAgcaagttgttgttgttgt
tttgtgaCTGGTTTTATCATACTTGGAATATTGGCCAGCATATCGTTGGT
ATTTTATTATCTCAGCTACCTGATGAAAAATCAATACATAGAGGAATTAT
CAACCACATAAATTACTGTTCTTGTTGGTAACCTTACCACCAAAAAACTG
TGCCAAGATGTTGCAACAAATTATAAAGACAATGTATATAGAGCCTGAGC
TCCTTGAAGAGCTATCAGAAGAACAGAAGCAGATTTTGTATTTCAAGATG
CGTGAAGAACAGATCCGAAGATACAAAGTTCgaatggaagaagaagaaat
ggaAGGGAAACTGAACCCTGAAccaaagaaaggTTTGAAGAAGGTGAGCT
TCCTGACGAACGACGAGGATGAACCGATTGTTCACGTCATCAAAGATCCC
GATGATGAACATGTTGTCGATGCTGTTGcTGTTAAGAAGCGAATAGAGGC
TGAAGCTTTAAAGCTAGCTGAATTACAGGCTAAAAAAGAGCatgaagaaa
aacgaaaaaaggaactggaaactattgagaagaaaagaaaagaagaagag
aaaaggttgaaagatgaagaagaaagatTGAAAAAGGAGAGAGAACAAAA
AGTAGCAGAGCTGAAATTACAGGCTGAAAAGGCTGCTGCCCTCGAGGCTA
GAgAGGCAACCTTGCAAAGGGAAAAAGCAGAACTTGAGAGAATTGAGCTT
GAACGAAAACGCttggaagaagaaaaacaaagggAACAAGCACTTCAAGA
ATTACGCGAAAAAGAAGAGGTAGAGAAGAAACAAAGAGAGGAAGAACAGA
GAATCGAAGAGGAGAAACGAAAAGAAGAAATCTacgaaaagttgaaaata
caACAGGAAGAAGAGAGGaagaaggaagaagaagaagcagaaCAACTTCA
ACAAGAATGGGAAGAGAGGGAAGTTAAAGCTAAAGAGGCCGATCGACAAA
GACGTAGTTCCATATCTCAAGCAAGAAATGAACTGTCTCGTCAACGCAGG
CTTGCCAAAGAGCGCGAAGAGCTTGAACGGTCACGTGTTGAAGCAAAGGT
TGATGAAAAGCCAGAAATCTATGACCCAGAAGCAAACAAGACTGTTTTTA
CCCAAACCACACCGCCAcctgatgaaaaagaaaagtcgAAAAAGGATAAG
AAACAGAGTTTCAGTTTCGGAAGAAAGAAGAAGCCTTCATTGGAGGAGAA
AGAAAACAAGAAGAAGCACTCCCCTACTTTATTgaGTGCCTCTAAAACTA
AAAGCCCGGAGCGTCCGCCCTTGCCAGCACGCCCAACGATATCAGCACCA
AGTGGTGTAACAAGCACACGAACTGAAAAGGATGCCATTCCTGTCAAAAA
AGACATTGTAAAGCCTAAACGCCCACCACCTCCGCCAACAGGTGGTGGCG
GTGATAAAAAGAATACTTCAAAACCACCCTTACCCCCTCGACCGAAAAGT
CACAATGAGGTTGTCACATGGTggaaagataatgaatatgatAAAAAAGC
GGGTCTGGATGATGACCATAAGCCACTGCAATGGTTTCATGGCACCATTT
CACGCCTACAAGCTGAACACTTGCTAGAGGACCAAAAACAAGGATCCTTT
TTAATCAGAGTCAGTGAAAGAGTATGGGGTTATACTATTTCTTATAAAGA
CGTTGCAAGATTCAAACACTTTTTAATTGATACCACGTCAGGCTATCAGT
TGTTTGGTACAGAACAGAAAGTACATAGTTCCTTGAATGAGCTTATCGAT
TACCATAAACAGCATCCTATATCAGGGCTTGgtcaagaaattttaaaatt
cccTGTCGGTCAAAATACCGACCCACCGGATTATGCCGACCTATTTGTTG
AAAATACAAGTATTTGATTGGAAATTCACTGGTGGTAATAGAAAGTATCT
AACGAGTTTTCTATGTTGGTACGTTTTCAATACGGTTGGTTTTTGCATGT
ATTGGATGTGTTTGACTTGGTTTGCAATGCAGTTTTTTTGCCTTACAGAT
TTGGGAGAAACATTGTTTTTGTTGCATGTTTTCCCTGAATTATTTTCCAT
CTACCAATACCACCAGTGCATCTACTGCTAAGAGCGATACCTTAGCCTCT
AAGATATTCCACAGACACTCAGTCTCGAAAATTTAGACACCCTTTTAGAG
AAATTCCACTAAGCCTTAAGCGGGATCACATCTTTTTTCTCAATAACCTA
ACTTATTAT

Run BLAST on NCBI

protein sequence of TCONS_00051232-protein

>TCONS_00051232-protein ID=TCONS_00051232-protein|Name=TCONS_00051232-protein|organism=Clytia hemisphaerica|type=polypeptide|length=569bp
MLQQIIKTMYIEPELLEELSEEQKQILYFKMREEQIRRYKVRMEEEEMEG
KLNPEPKKGLKKVSFLTNDEDEPIVHVIKDPDDEHVVDAVAVKKRIEAEA
LKLAELQAKKEHEEKRKKELETIEKKRKEEEKRLKDEEERLKKEREQKVA
ELKLQAEKAAALEAREATLQREKAELERIELERKRLEEEKQREQALQELR
EKEEVEKKQREEEQRIEEEKRKEEIYEKLKIQQEEERKKEEEEAEQLQQE
WEEREVKAKEADRQRRSSISQARNELSRQRRLAKEREELERSRVEAKVDE
KPEIYDPEANKTVFTQTTPPPDEKEKSKKDKKQSFSFGRKKKPSLEEKEN
KKKHSPTLLSASKTKSPERPPLPARPTISAPSGVTSTRTEKDAIPVKKDI
VKPKRPPPPPTGGGGDKKNTSKPPLPPRPKSHNEVVTWWKDNEYDKKAGL
DDDHKPLQWFHGTISRLQAEHLLEDQKQGSFLIRVSERVWGYTISYKDVA
RFKHFLIDTTSGYQLFGTEQKVHSSLNELIDYHKQHPISGLGQEILKFPV
GQNTDPPDYADLFVENTSI

Run BLAST on NCBI

transcript from alignment at scaffold_20:83308..89233-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00051232 ID=TCONS_00051232|Name=TCONS_00051232|organism=Clytia hemisphaerica|type=transcript|length=5926bp|location=Sequence derived from alignment at scaffold_20:83308..89233- (Clytia hemisphaerica)
TAGAAACTTGAAATAACAAGAATAAAAGAAATGGGTGAAGAGGAAATTGT
CCCTAATGATGTTGATTCTGAAGAAAATTCTGAAGATGAGATTTCTGATG
AAGATGAAGAAGAGATCAGTGATTTGGATGATGAAAGTGACGATGATCTT
GACCAGGTTGTTGAACAGCCCGATGATGATGAAATTGCCAAAACAAAACC
AGCTAGAATTAAGGTAACAGATACTATTTTTGAAGCAGCCTTCCACCCAT
CAAAGGATATCCTTGCGGTTGGAGAGATTACTGGCACTGTAAGTATATTT
TCATTTTCCAATGGGGAGAATAAAAAACTGATTGATTTTAAACATCAAAA
AGAAGCTTGTCGTTGTTTAAGCTTCTCTTCTGATGGACAGAGATTATATT
CTGGGTGCCAAGATAGTTCTATTTATTGCTCTGATATGAACACTGGTTCA
ATTCTACACACCATCCCAAACGCTCACGATCAATCAATTAGCGCTATGCA
TTTAGTGTCAGATAATTTCCTAACCAGTGGCTGTGAAGCTGGTGTCGTGA
AAGTTTGGGATTTGAGAACTTTTTCAAAAGCTGCTGACTTTGTTGGAAGA
AAAGATTACATTTCTGCATTAACCAGTGACAAACAGAAGAAACATTTGCT
ATCCACTAGTGGAGATGGTGTTTTGTCTGTGTTCAATTTACGCAAAAACG
CAATTGTTCAAGAATCTGATCAGTTAGATGATGAGCTTTTATGTTTGGAT
ATCATCAAAAATGGCAAGAAAGTGATATGTGGCAGTGCAACTGGAGTGCT
GAATATTTATTCATGGGGAGAATGGGGAGATATAAGTGACCGATACCCAA
CCCGCTCTGATGAAATTGAATCTGTGTGCTCTATTAATGATGACATCATC
TGCTATGGAACAGGGGATGGCTACGTCAAAGCCATGTATGTGCAACCCTA
CAAGGAAATCAAGACTGTTGGGAGGCATGGTATTATGGGTGTAGGTAGTA
TGAAGCTCTCTCCTGATAAGAGTATGTTGGTGAGTTGTGGTGGTGATGAA
ACCGTCAGATTCTGGAAAGTTGCTGATTTACAAGAGGAGTCCTTAGACGA
AGATGAAAGAAGAGGTGTCAAACGAAAGAGAACAGATGGTGACTCCAAAG
CTGCTGATTTCTTTGCTGACCTTTGAAAATCTCTTGGTACTAACTGGCTT
CGTATCTGTTTTATCCAAAGAGTCTTGCTTTTGTTAACACTTTGACCTGA
GAGGATACTGTCTCTTTTACCTTGCAAGTTTTTATAACAGACTCAGTCTA
AAGTTTTTGTACAATCATTTTTACTATATTGGCAAATATATATTATAACC
CATTTAACCATATAACCAGGAAGTAGAAGTTACAAGTTGCAATTAGCAGC
AATTATACATCAACATTGATATAAATCTCTCTTTATTACTATATTTGTCA
ATGAGATTTTCTTTATACAGGAAATCTGAGGAAATCTGTACTTTTGAATG
CTTTTCTATTATCATACACAACGTTTCAAAATTGCTTTATGCCTCTGTGT
GATGGATGTGCGAATTCTGTGTTATAATACGACTGGCAAAATGACAAATG
TGTCACATTTAAAACTAATAAATTTTCTTGATTAAAATATCATTACCTTG
TTATTAACAGCATTTATTACAATGTAAACAAACTTGTTCCTCATATTATT
GTAGGCTAAAAAGATATTATCGAGAAAATGTTTATAATATAAAGAAACAA
AACATTATCATACACGACCAGCACTTGATTCGCTGCCAGGATGACTGCAT
TTGAATGATTTGGTCAATGATGGTGAAGATATGAAAAGTATTTTGTTATG
AGCCGAGGTGGAGGAGCAAGTTGTTGTTGTTGTTTTGTGACTGGTTTTAT
CATACTTGGAATATTGGCCAGCATATCGTTGGTATTTTATTATCTCAGCT
ACCTGATGAAAAATCAATACATAGAGGTGAAGCTCTTTTTGTTGTTACCA
CTACTACCTACTACGACTATAGTAGTAGTGTTTTGTTTTGCTTAAAACAG
TTAAGCAAAACTCAAACTTAACAGGACTCAANGAAATCAATACATAGAGG
TGAAGCTATTTTTGTTGTTACCACTACTACCTACTACGACTTAAACTTAG
TAGTAGTGTTTTGTTTTGCTTAAAACAGTTAAGCAAAACTCAAACTTAAC
AGGACTCAATATCATCATAACATTTTTCTTTTGAATGGCTATCCTCTTGG
TTTTTCTTGATAAGAATAGAATAAGGGCACTTTACATTTTAAACAATTTC
TCACCAGTATGCTGTCCCGGTATATGAAAATGTTTCACTTTGAAGAATAG
ATGATTTAATAACATGGAAACTTTAATAAATTTTCTAAAAAAAAAAGAAA
AGTTTATCAAAATCAAAGAACTTCTTCTACTGCTATACTTGTGAGACAAG
CTTAAGTGTAAAGAGATTTTCAGTTCACAGAACAATTACTCGACAATTGT
TGAAAAATTACTCAATGTTCTTTTTTTCCATGTACAGGAATTATCAACCA
CATAAATTACTGTTCTTGTTGGTAACCTTACCACCAAAAAACTGTGCCAA
GATGTTGCAACAAATTATAAAGACAATGTATATAGAGCCTGAGCTCCTTG
AAGAGCTATCAGAAGAACAGAAGCAGATTTTGTATTTCAAGATGCGTGAA
GAACAGATCCGAAGATACAAAGTTCGAATGGAAGAAGAAGAAATGGAAGG
GAAACTGAACCCTGAACCAAAGAAAGGTTTTTACTGTGTATTTTTTCTTC
TCATTTTATTTCTTGCAGTGTTTTCAAAGTATGTTTGTTGAAATGGGACT
GTCTGTCTGAATTTTAAATTAACAATTAATTAAAGTCAATTCGTGTTAAA
TAATGACCAGGAGGTTGTTCTACTTTAGTAACATTTACGTTAGTGAATGT
TTGACGTTGAAACGATATAAAGAATATATAGGCCTAGTTACACCCCTGCA
AACTGGAAAAATTAGCTAAGAATTTGTTCCTATTAAGAAAAATACCCGTG
TTTTCAATTAATTATATTATATCTTAAAAACCAAATGATTGCAAGAATTT
AGATTTTCTAGAGATACTTATTTAGGGTTGATCTATCAAAATCGCATTTT
CTTCTCATAATTGACTATTCAGTCAATTCTTTTTCCACAATAAACCCTCT
TTTTTCTTTTCAAGGTTTGAAGAAGGTGAGCTTCCTGACGAACGACGAGG
ATGAACCGATTGTTCACGTCATCAAAGATCCCGATGATGAACATGTTGTC
GATGCTGTTGGTAAAAGAATAATTTGTTTTGTGGCCAACTTTTTTCTCTT
TTAGTCTAATCAGGCCTATTGTTCCCATGGGACTCTTCAAAATAACACTT
AGAAAAATTACAATGTGATTCCAATTCCCCCATCATAGGGACACACTCTT
TGATTGGACTTTTCTCAAAACCTTATTATTGAAATATTTTACGGGGGCAT
CCCATAGTCATTACGAATTTTTGATCTTGAATTGATTTAAAAAGGCCCAT
ATCTAAGAAGCAAGCTTTCCTTTGAATAAATATTTTATTCGCCATTTTAT
GGTCTATAAATCTTCAAATCAAATTTCTGAATCTTTTTTTTTACTTTTTA
AGCTGTTAAGAAGCGAATAGAGGCTGAAGCTTTAAAGCTAGCTGAATTAC
AGGCTAAAAAAGAGCATGAAGAAAAACGAAAAAAGGAACTGGAAACTATT
GAGAAGAAAAGAAAAGAAGAAGAGAAAAGGTTGAAAGATGAAGAAGAAAG
ATTGAAAAAGGAGAGAGAACAAAAAGTAGCAGAGCTGAAATTACAGGCTG
AAAAGGCTGCTGCCCTCGAGGCTAGAGTTAGTATTTTCAATGTTCATTTT
ACTCTTCTGGTCTTATCTCAGTCTAGTTGATTTTCTATAAAAATTTTAAA
CTGAAATTGATATCTTTGAAAAAATGTTCTTTAGGAGGCAACCTTGCAAA
GGGAAAAAGCAGAACTTGAGAGAATTGAGCTTGAACGAAAACGCTTGGAA
GAAGAAAAACAAAGGGAACAAGCACTTCAAGAATTACGCGAAAAAGAAGA
GGTAGAGAAGAAACAAAGAGAGGAAGAACAGAGAATCGAAGAGGAGAAAC
GAAAAGAAGAAATCTACGAAAAGTTGAAAATACAACAGGAAGAAGAGAGG
AAGAAGGAAGAAGAAGAAGCAGAACAACTTCAACAAGAATGGGAAGAGAG
GGAAGTTAAAGCTAAAGAGGCCGATCGACAAAGACGTAGTTCCATATCTC
AAGCAAGAAATGAACTGTCTCGTCAACGCAGGCTTGCCAAAGAGCGCGAA
GAGCTTGAACGGTCACGTGTTGAAGCAAAGGTTGATGAAAAGCCAGAAAT
CTATGACCCAGAAGCAAACAAGACTGTTTTTACCCAAACCACACCGCCAC
CTGATGAAAAAGAAAAGTCGAAAAAGGATAAGAAACAGAGTTTCAGTTTC
GGAAGAAAGAAGAAGCCTTCATTGGAGGAGAAAGAAAACAAGAAGAAGCA
CTCCCCTACTTTATTGTGAGCCATTCTTCATTTTAATACTTTCTCATAAC
ATTTTTTTAAACTCGAAAATGTACTCTATCTATTCTTATACTTTCGTCGT
TTTTTTTTCTTAGGAGTGCCTCTAAAACTAAAAGCCCGGAGCGTCCGCCC
TTGCCAGCACGCCCAACGATATCAGCACCAAGTGGTGTAACAAGCACACG
AACTGAAAAGGATGCCATTCCTGTCAAAAAAGACATTGTAAAGCCTAAAC
GCCCACCACCTCCGCCAACAGGTGGTGGCGGTGATAAAAAGAATACTTCA
AAACCACCCTTACCCCCTCGACCGAAAAGTCACAATGAGGTTGTCACATG
GTGGAAAGATAATGAATATGATAAAAAAGCGGGTCTGGATGATGACCATA
AGCCACTGCAATGGTTTCATGGTGAGTCTTTTTCAACTTTAAAATCTTTT
TCATCGTAAAATTATTAGAAATTTGAGGATTTTTCTTGAAACTTAATTCA
TTTATAGTTTAACAATGTGGGAGGAAACAAGTCGGTGGGGAAAAGTGACC
AAAATCTTTGAGGAAAATTTTCCCCTCGTCAACTAGATTGGACCTGGGCA
TATCTTTCGGAAAAGTTTTTCCAAAAGGTTTTTGTCTCTACATTGTGAAA
CTATAGATTTAGGATGTGTGACAACATTATTCAATATTTTTTCTTCTTTT
TTTTGCAGGCACCATTTCACGCCTACAAGCTGAACACTTGCTAGAGGACC
AAAAACAAGGATCCTTTTTAATCAGAGTCAGTGAAAGAGTATGGGGTTAT
ACTATTTCTTATAAAGACGTTGCAAGATTCAAACACTTTTTAATTGATAC
CACGTCAGGCTATCAGTTGTTTGGTACAGAACAGAAAGTACATAGTTCCT
TGAATGAGCTTATCGATTACCATAAACAGCATCCTATATCAGGGCTTGGT
CAAGAAATTTTAAAATTCCCTGTCGGTCAAAATACCGACCCACCGGATTA
TGCCGACCTATTTGTTGAAAATACAAGTATTTGATTGGAAATTCACTGGT
GGTAATAGAAAGTATCTAACGAGTTTTCTATGTTGGTACGTTTTCAATAC
GGTTGGTTTTTGCATGTATTGGATGTGTTTGACTTGGTTTGCAATGCAGT
TTTTTTGCCTTACAGATTTGGGAGAAACATTGTTTTTGTTGCATGTTTTC
CCTGAATTATTTTCCATCTACCAATACCACCAGTGCATCTACTGCTAAGA
GCGATACCTTAGCCTCTAAGATATTCCACAGACACTCAGTCTCGAAAATT
TAGACACCCTTTTAGAGAAATTCCACTAAGCCTTAAGCGGGATCACATCT
TTTTTCTCAATAACCTAACTTATTAT

Coding sequence (CDS) from alignment at scaffold_20:83308..89233-

>TCONS_00051232 ID=TCONS_00051232|Name=TCONS_00051232|organism=Clytia hemisphaerica|type=CDS|length=10260bp|location=Sequence derived from alignment at scaffold_20:83308..89233- (Clytia hemisphaerica)
GCACCATTTCACGCCTACAAGCTGAACACTTGCTAGAGGACCAAAAACAA
GGATCCTTTTTAATCAGAGTCAGTGAAAGAGTATGGGGTTATACTATTTC
TTATAAAGACGTTGCAAGATTCAAACACTTTTTAATTGATACCACGTCAG
GCTATCAGTTGTTTGGTACAGAACAGAAAGTACATAGTTCCTTGAATGAG
CTTATCGATTACCATAAACAGCATCCTATATCAGGGCTTGGTCAAGAAAT
TTTAAAATTCCCTGTCGGTCAAAATACCGACCCACCGGATTATGCCGACC
TATTTGTTGAAAATACAAGTATTTGAGAGTGCCTCTAAAACTAAAAGCCC
GGAGCGTCCGCCCTTGCCAGCACGCCCAACGATATCAGCACCAAGTGGTG
TAACAAGCACACGAACTGAAAAGGATGCCATTCCTGTCAAAAAAGACATT
GTAAAGCCTAAACGCCCACCACCTCCGCCAACAGGTGGTGGCGGTGATAA
AAAGAATACTTCAAAACCACCCTTACCCCCTCGACCGAAAAGTCACAATG
AGGTTGTCACATGGTGGAAAGATAATGAATATGATAAAAAAGCGGGTCTG
GATGATGACCATAAGCCACTGCAATGGTTTCATGGAGGCAACCTTGCAAA
GGGAAAAAGCAGAACTTGAGAGAATTGAGCTTGAACGAAAACGCTTGGAA
GAAGAAAAACAAAGGGAACAAGCACTTCAAGAATTACGCGAAAAAGAAGA
GGTAGAGAAGAAACAAAGAGAGGAAGAACAGAGAATCGAAGAGGAGAAAC
GAAAAGAAGAAATCTACGAAAAGTTGAAAATACAACAGGAAGAAGAGAGG
AAGAAGGAAGAAGAAGAAGCAGAACAACTTCAACAAGAATGGGAAGAGAG
GGAAGTTAAAGCTAAAGAGGCCGATCGACAAAGACGTAGTTCCATATCTC
AAGCAAGAAATGAACTGTCTCGTCAACGCAGGCTTGCCAAAGAGCGCGAA
GAGCTTGAACGGTCACGTGTTGAAGCAAAGGTTGATGAAAAGCCAGAAAT
CTATGACCCAGAAGCAAACAAGACTGTTTTTACCCAAACCACACCGCCAC
CTGATGAAAAAGAAAAGTCGAAAAAGGATAAGAAACAGAGTTTCAGTTTC
GGAAGAAAGAAGAAGCCTTCATTGGAGGAGAAAGAAAACAAGAAGAAGCA
CTCCCCTACTTTATTCTGTTAAGAAGCGAATAGAGGCTGAAGCTTTAAAG
CTAGCTGAATTACAGGCTAAAAAAGAGCATGAAGAAAAACGAAAAAAGGA
ACTGGAAACTATTGAGAAGAAAAGAAAAGAAGAAGAGAAAAGGTTGAAAG
ATGAAGAAGAAAGATTGAAAAAGGAGAGAGAACAAAAAGTAGCAGAGCTG
AAATTACAGGCTGAAAAGGCTGCTGCCCTCGAGGCTAGAGTTTGAAGAAG
GTGAGCTTCCTGACGAACGACGAGGATGAACCGATTGTTCACGTCATCAA
AGATCCCGATGATGAACATGTTGTCGATGCTGTTGATGTTGCAACAAATT
ATAAAGACAATGTATATAGAGCCTGAGCTCCTTGAAGAGCTATCAGAAGA
ACAGAAGCAGATTTTGTATTTCAAGATGCGTGAAGAACAGATCCGAAGAT
ACAAAGTTCGAATGGAAGAAGAAGAAATGGAAGGGAAACTGAACCCTGAA
CCAAAGAAAGGCACCATTTCACGCCTACAAGCTGAACACTTGCTAGAGGA
CCAAAAACAAGGATCCTTTTTAATCAGAGTCAGTGAAAGAGTATGGGGTT
ATACTATTTCTTATAAAGACGTTGCAAGATTCAAACACTTTTTAATTGAT
ACCACGTCAGGCTATCAGTTGTTTGGTACAGAACAGAAAGTACATAGTTC
CTTGAATGAGCTTATCGATTACCATAAACAGCATCCTATATCAGGGCTTG
GTCAAGAAATTTTAAAATTCCCTGTCGGTCAAAATACCGACCCACCGGAT
TATGCCGACCTATTTGTTGAAAATACAAGTATTTGAGAGTGCCTCTAAAA
CTAAAAGCCCGGAGCGTCCGCCCTTGCCAGCACGCCCAACGATATCAGCA
CCAAGTGGTGTAACAAGCACACGAACTGAAAAGGATGCCATTCCTGTCAA
AAAAGACATTGTAAAGCCTAAACGCCCACCACCTCCGCCAACAGGTGGTG
GCGGTGATAAAAAGAATACTTCAAAACCACCCTTACCCCCTCGACCGAAA
AGTCACAATGAGGTTGTCACATGGTGGAAAGATAATGAATATGATAAAAA
AGCGGGTCTGGATGATGACCATAAGCCACTGCAATGGTTTCATGGAGGCA
ACCTTGCAAAGGGAAAAAGCAGAACTTGAGAGAATTGAGCTTGAACGAAA
ACGCTTGGAAGAAGAAAAACAAAGGGAACAAGCACTTCAAGAATTACGCG
AAAAAGAAGAGGTAGAGAAGAAACAAAGAGAGGAAGAACAGAGAATCGAA
GAGGAGAAACGAAAAGAAGAAATCTACGAAAAGTTGAAAATACAACAGGA
AGAAGAGAGGAAGAAGGAAGAAGAAGAAGCAGAACAACTTCAACAAGAAT
GGGAAGAGAGGGAAGTTAAAGCTAAAGAGGCCGATCGACAAAGACGTAGT
TCCATATCTCAAGCAAGAAATGAACTGTCTCGTCAACGCAGGCTTGCCAA
AGAGCGCGAAGAGCTTGAACGGTCACGTGTTGAAGCAAAGGTTGATGAAA
AGCCAGAAATCTATGACCCAGAAGCAAACAAGACTGTTTTTACCCAAACC
ACACCGCCACCTGATGAAAAAGAAAAGTCGAAAAAGGATAAGAAACAGAG
TTTCAGTTTCGGAAGAAAGAAGAAGCCTTCATTGGAGGAGAAAGAAAACA
AGAAGAAGCACTCCCCTACTTTATTCTGTTAAGAAGCGAATAGAGGCTGA
AGCTTTAAAGCTAGCTGAATTACAGGCTAAAAAAGAGCATGAAGAAAAAC
GAAAAAAGGAACTGGAAACTATTGAGAAGAAAAGAAAAGAAGAAGAGAAA
AGGTTGAAAGATGAAGAAGAAAGATTGAAAAAGGAGAGAGAACAAAAAGT
AGCAGAGCTGAAATTACAGGCTGAAAAGGCTGCTGCCCTCGAGGCTAGAG
TTTGAAGAAGGTGAGCTTCCTGACGAACGACGAGGATGAACCGATTGTTC
ACGTCATCAAAGATCCCGATGATGAACATGTTGTCGATGCTGTTGATGTT
GCAACAAATTATAAAGACAATGTATATAGAGCCTGAGCTCCTTGAAGAGC
TATCAGAAGAACAGAAGCAGATTTTGTATTTCAAGATGCGTGAAGAACAG
ATCCGAAGATACAAAGTTCGAATGGAAGAAGAAGAAATGGAAGGGAAACT
GAACCCTGAACCAAAGAAAGGCACCATTTCACGCCTACAAGCTGAACACT
TGCTAGAGGACCAAAAACAAGGATCCTTTTTAATCAGAGTCAGTGAAAGA
GTATGGGGTTATACTATTTCTTATAAAGACGTTGCAAGATTCAAACACTT
TTTAATTGATACCACGTCAGGCTATCAGTTGTTTGGTACAGAACAGAAAG
TACATAGTTCCTTGAATGAGCTTATCGATTACCATAAACAGCATCCTATA
TCAGGGCTTGGTCAAGAAATTTTAAAATTCCCTGTCGGTCAAAATACCGA
CCCACCGGATTATGCCGACCTATTTGTTGAAAATACAAGTATTTGAGAGT
GCCTCTAAAACTAAAAGCCCGGAGCGTCCGCCCTTGCCAGCACGCCCAAC
GATATCAGCACCAAGTGGTGTAACAAGCACACGAACTGAAAAGGATGCCA
TTCCTGTCAAAAAAGACATTGTAAAGCCTAAACGCCCACCACCTCCGCCA
ACAGGTGGTGGCGGTGATAAAAAGAATACTTCAAAACCACCCTTACCCCC
TCGACCGAAAAGTCACAATGAGGTTGTCACATGGTGGAAAGATAATGAAT
ATGATAAAAAAGCGGGTCTGGATGATGACCATAAGCCACTGCAATGGTTT
CATGGAGGCAACCTTGCAAAGGGAAAAAGCAGAACTTGAGAGAATTGAGC
TTGAACGAAAACGCTTGGAAGAAGAAAAACAAAGGGAACAAGCACTTCAA
GAATTACGCGAAAAAGAAGAGGTAGAGAAGAAACAAAGAGAGGAAGAACA
GAGAATCGAAGAGGAGAAACGAAAAGAAGAAATCTACGAAAAGTTGAAAA
TACAACAGGAAGAAGAGAGGAAGAAGGAAGAAGAAGAAGCAGAACAACTT
CAACAAGAATGGGAAGAGAGGGAAGTTAAAGCTAAAGAGGCCGATCGACA
AAGACGTAGTTCCATATCTCAAGCAAGAAATGAACTGTCTCGTCAACGCA
GGCTTGCCAAAGAGCGCGAAGAGCTTGAACGGTCACGTGTTGAAGCAAAG
GTTGATGAAAAGCCAGAAATCTATGACCCAGAAGCAAACAAGACTGTTTT
TACCCAAACCACACCGCCACCTGATGAAAAAGAAAAGTCGAAAAAGGATA
AGAAACAGAGTTTCAGTTTCGGAAGAAAGAAGAAGCCTTCATTGGAGGAG
AAAGAAAACAAGAAGAAGCACTCCCCTACTTTATTCTGTTAAGAAGCGAA
TAGAGGCTGAAGCTTTAAAGCTAGCTGAATTACAGGCTAAAAAAGAGCAT
GAAGAAAAACGAAAAAAGGAACTGGAAACTATTGAGAAGAAAAGAAAAGA
AGAAGAGAAAAGGTTGAAAGATGAAGAAGAAAGATTGAAAAAGGAGAGAG
AACAAAAAGTAGCAGAGCTGAAATTACAGGCTGAAAAGGCTGCTGCCCTC
GAGGCTAGAGTTTGAAGAAGGTGAGCTTCCTGACGAACGACGAGGATGAA
CCGATTGTTCACGTCATCAAAGATCCCGATGATGAACATGTTGTCGATGC
TGTTGATGTTGCAACAAATTATAAAGACAATGTATATAGAGCCTGAGCTC
CTTGAAGAGCTATCAGAAGAACAGAAGCAGATTTTGTATTTCAAGATGCG
TGAAGAACAGATCCGAAGATACAAAGTTCGAATGGAAGAAGAAGAAATGG
AAGGGAAACTGAACCCTGAACCAAAGAAAGGCACCATTTCACGCCTACAA
GCTGAACACTTGCTAGAGGACCAAAAACAAGGATCCTTTTTAATCAGAGT
CAGTGAAAGAGTATGGGGTTATACTATTTCTTATAAAGACGTTGCAAGAT
TCAAACACTTTTTAATTGATACCACGTCAGGCTATCAGTTGTTTGGTACA
GAACAGAAAGTACATAGTTCCTTGAATGAGCTTATCGATTACCATAAACA
GCATCCTATATCAGGGCTTGGTCAAGAAATTTTAAAATTCCCTGTCGGTC
AAAATACCGACCCACCGGATTATGCCGACCTATTTGTTGAAAATACAAGT
ATTTGAGAGTGCCTCTAAAACTAAAAGCCCGGAGCGTCCGCCCTTGCCAG
CACGCCCAACGATATCAGCACCAAGTGGTGTAACAAGCACACGAACTGAA
AAGGATGCCATTCCTGTCAAAAAAGACATTGTAAAGCCTAAACGCCCACC
ACCTCCGCCAACAGGTGGTGGCGGTGATAAAAAGAATACTTCAAAACCAC
CCTTACCCCCTCGACCGAAAAGTCACAATGAGGTTGTCACATGGTGGAAA
GATAATGAATATGATAAAAAAGCGGGTCTGGATGATGACCATAAGCCACT
GCAATGGTTTCATGGAGGCAACCTTGCAAAGGGAAAAAGCAGAACTTGAG
AGAATTGAGCTTGAACGAAAACGCTTGGAAGAAGAAAAACAAAGGGAACA
AGCACTTCAAGAATTACGCGAAAAAGAAGAGGTAGAGAAGAAACAAAGAG
AGGAAGAACAGAGAATCGAAGAGGAGAAACGAAAAGAAGAAATCTACGAA
AAGTTGAAAATACAACAGGAAGAAGAGAGGAAGAAGGAAGAAGAAGAAGC
AGAACAACTTCAACAAGAATGGGAAGAGAGGGAAGTTAAAGCTAAAGAGG
CCGATCGACAAAGACGTAGTTCCATATCTCAAGCAAGAAATGAACTGTCT
CGTCAACGCAGGCTTGCCAAAGAGCGCGAAGAGCTTGAACGGTCACGTGT
TGAAGCAAAGGTTGATGAAAAGCCAGAAATCTATGACCCAGAAGCAAACA
AGACTGTTTTTACCCAAACCACACCGCCACCTGATGAAAAAGAAAAGTCG
AAAAAGGATAAGAAACAGAGTTTCAGTTTCGGAAGAAAGAAGAAGCCTTC
ATTGGAGGAGAAAGAAAACAAGAAGAAGCACTCCCCTACTTTATTCTGTT
AAGAAGCGAATAGAGGCTGAAGCTTTAAAGCTAGCTGAATTACAGGCTAA
AAAAGAGCATGAAGAAAAACGAAAAAAGGAACTGGAAACTATTGAGAAGA
AAAGAAAAGAAGAAGAGAAAAGGTTGAAAGATGAAGAAGAAAGATTGAAA
AAGGAGAGAGAACAAAAAGTAGCAGAGCTGAAATTACAGGCTGAAAAGGC
TGCTGCCCTCGAGGCTAGAGTTTGAAGAAGGTGAGCTTCCTGACGAACGA
CGAGGATGAACCGATTGTTCACGTCATCAAAGATCCCGATGATGAACATG
TTGTCGATGCTGTTGATGTTGCAACAAATTATAAAGACAATGTATATAGA
GCCTGAGCTCCTTGAAGAGCTATCAGAAGAACAGAAGCAGATTTTGTATT
TCAAGATGCGTGAAGAACAGATCCGAAGATACAAAGTTCGAATGGAAGAA
GAAGAAATGGAAGGGAAACTGAACCCTGAACCAAAGAAAGGCACCATTTC
ACGCCTACAAGCTGAACACTTGCTAGAGGACCAAAAACAAGGATCCTTTT
TAATCAGAGTCAGTGAAAGAGTATGGGGTTATACTATTTCTTATAAAGAC
GTTGCAAGATTCAAACACTTTTTAATTGATACCACGTCAGGCTATCAGTT
GTTTGGTACAGAACAGAAAGTACATAGTTCCTTGAATGAGCTTATCGATT
ACCATAAACAGCATCCTATATCAGGGCTTGGTCAAGAAATTTTAAAATTC
CCTGTCGGTCAAAATACCGACCCACCGGATTATGCCGACCTATTTGTTGA
AAATACAAGTATTTGAGAGTGCCTCTAAAACTAAAAGCCCGGAGCGTCCG
CCCTTGCCAGCACGCCCAACGATATCAGCACCAAGTGGTGTAACAAGCAC
ACGAACTGAAAAGGATGCCATTCCTGTCAAAAAAGACATTGTAAAGCCTA
AACGCCCACCACCTCCGCCAACAGGTGGTGGCGGTGATAAAAAGAATACT
TCAAAACCACCCTTACCCCCTCGACCGAAAAGTCACAATGAGGTTGTCAC
ATGGTGGAAAGATAATGAATATGATAAAAAAGCGGGTCTGGATGATGACC
ATAAGCCACTGCAATGGTTTCATGGAGGCAACCTTGCAAAGGGAAAAAGC
AGAACTTGAGAGAATTGAGCTTGAACGAAAACGCTTGGAAGAAGAAAAAC
AAAGGGAACAAGCACTTCAAGAATTACGCGAAAAAGAAGAGGTAGAGAAG
AAACAAAGAGAGGAAGAACAGAGAATCGAAGAGGAGAAACGAAAAGAAGA
AATCTACGAAAAGTTGAAAATACAACAGGAAGAAGAGAGGAAGAAGGAAG
AAGAAGAAGCAGAACAACTTCAACAAGAATGGGAAGAGAGGGAAGTTAAA
GCTAAAGAGGCCGATCGACAAAGACGTAGTTCCATATCTCAAGCAAGAAA
TGAACTGTCTCGTCAACGCAGGCTTGCCAAAGAGCGCGAAGAGCTTGAAC
GGTCACGTGTTGAAGCAAAGGTTGATGAAAAGCCAGAAATCTATGACCCA
GAAGCAAACAAGACTGTTTTTACCCAAACCACACCGCCACCTGATGAAAA
AGAAAAGTCGAAAAAGGATAAGAAACAGAGTTTCAGTTTCGGAAGAAAGA
AGAAGCCTTCATTGGAGGAGAAAGAAAACAAGAAGAAGCACTCCCCTACT
TTATTCTGTTAAGAAGCGAATAGAGGCTGAAGCTTTAAAGCTAGCTGAAT
TACAGGCTAAAAAAGAGCATGAAGAAAAACGAAAAAAGGAACTGGAAACT
ATTGAGAAGAAAAGAAAAGAAGAAGAGAAAAGGTTGAAAGATGAAGAAGA
AAGATTGAAAAAGGAGAGAGAACAAAAAGTAGCAGAGCTGAAATTACAGG
CTGAAAAGGCTGCTGCCCTCGAGGCTAGAGTTTGAAGAAGGTGAGCTTCC
TGACGAACGACGAGGATGAACCGATTGTTCACGTCATCAAAGATCCCGAT
GATGAACATGTTGTCGATGCTGTTGATGTTGCAACAAATTATAAAGACAA
TGTATATAGAGCCTGAGCTCCTTGAAGAGCTATCAGAAGAACAGAAGCAG
ATTTTGTATTTCAAGATGCGTGAAGAACAGATCCGAAGATACAAAGTTCG
AATGGAAGAAGAAGAAATGGAAGGGAAACTGAACCCTGAACCAAAGAAAG
GCACCATTTCACGCCTACAAGCTGAACACTTGCTAGAGGACCAAAAACAA
GGATCCTTTTTAATCAGAGTCAGTGAAAGAGTATGGGGTTATACTATTTC
TTATAAAGACGTTGCAAGATTCAAACACTTTTTAATTGATACCACGTCAG
GCTATCAGTTGTTTGGTACAGAACAGAAAGTACATAGTTCCTTGAATGAG
CTTATCGATTACCATAAACAGCATCCTATATCAGGGCTTGGTCAAGAAAT
TTTAAAATTCCCTGTCGGTCAAAATACCGACCCACCGGATTATGCCGACC
TATTTGTTGAAAATACAAGTATTTGAGAGTGCCTCTAAAACTAAAAGCCC
GGAGCGTCCGCCCTTGCCAGCACGCCCAACGATATCAGCACCAAGTGGTG
TAACAAGCACACGAACTGAAAAGGATGCCATTCCTGTCAAAAAAGACATT
GTAAAGCCTAAACGCCCACCACCTCCGCCAACAGGTGGTGGCGGTGATAA
AAAGAATACTTCAAAACCACCCTTACCCCCTCGACCGAAAAGTCACAATG
AGGTTGTCACATGGTGGAAAGATAATGAATATGATAAAAAAGCGGGTCTG
GATGATGACCATAAGCCACTGCAATGGTTTCATGGAGGCAACCTTGCAAA
GGGAAAAAGCAGAACTTGAGAGAATTGAGCTTGAACGAAAACGCTTGGAA
GAAGAAAAACAAAGGGAACAAGCACTTCAAGAATTACGCGAAAAAGAAGA
GGTAGAGAAGAAACAAAGAGAGGAAGAACAGAGAATCGAAGAGGAGAAAC
GAAAAGAAGAAATCTACGAAAAGTTGAAAATACAACAGGAAGAAGAGAGG
AAGAAGGAAGAAGAAGAAGCAGAACAACTTCAACAAGAATGGGAAGAGAG
GGAAGTTAAAGCTAAAGAGGCCGATCGACAAAGACGTAGTTCCATATCTC
AAGCAAGAAATGAACTGTCTCGTCAACGCAGGCTTGCCAAAGAGCGCGAA
GAGCTTGAACGGTCACGTGTTGAAGCAAAGGTTGATGAAAAGCCAGAAAT
CTATGACCCAGAAGCAAACAAGACTGTTTTTACCCAAACCACACCGCCAC
CTGATGAAAAAGAAAAGTCGAAAAAGGATAAGAAACAGAGTTTCAGTTTC
GGAAGAAAGAAGAAGCCTTCATTGGAGGAGAAAGAAAACAAGAAGAAGCA
CTCCCCTACTTTATTCTGTTAAGAAGCGAATAGAGGCTGAAGCTTTAAAG
CTAGCTGAATTACAGGCTAAAAAAGAGCATGAAGAAAAACGAAAAAAGGA
ACTGGAAACTATTGAGAAGAAAAGAAAAGAAGAAGAGAAAAGGTTGAAAG
ATGAAGAAGAAAGATTGAAAAAGGAGAGAGAACAAAAAGTAGCAGAGCTG
AAATTACAGGCTGAAAAGGCTGCTGCCCTCGAGGCTAGAGTTTGAAGAAG
GTGAGCTTCCTGACGAACGACGAGGATGAACCGATTGTTCACGTCATCAA
AGATCCCGATGATGAACATGTTGTCGATGCTGTTGATGTTGCAACAAATT
ATAAAGACAATGTATATAGAGCCTGAGCTCCTTGAAGAGCTATCAGAAGA
ACAGAAGCAGATTTTGTATTTCAAGATGCGTGAAGAACAGATCCGAAGAT
ACAAAGTTCGAATGGAAGAAGAAGAAATGGAAGGGAAACTGAACCCTGAA
CCAAAGAAAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_032475	XLOC_032475	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00051232-protein	TCONS_00051232-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:83308..89233 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	8.89143e-05	1.46604e-08	0	4.95097	0	0	0	2.37008e-09	0	0	0	0	0.748534	1.82749	0	0	0	0	19.2237	13.9705	0	0	0	0

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000980	SH2

Blast

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BLAST of TCONS_00051232 vs. Swiss-Prot (Human)
Match: SH24B (SH2 domain-containing protein 4B OS=Homo sapiens GN=SH2D4B PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 9.911e-33
Identity = 62/140 (44.29%), Postives = 92/140 (65.71%), Query Frame = 3

Query: 1833 PPRPKSHNEVVTWWKDNEYDKKAGLDDDHKPLQ-WFHGTISRLQAEHLLEDQKQGSFLIRVSERVWGYTISYKDVARFKHFLIDTTSG-YQLFGTEQKVHSSLNELIDYHKQHPISGLGQEILKFPVGQNTDPPDYADLF 2246
            P RP S + +V W+K+ +  ++AG + + K +  WFHG ISR  AE LLE+  +G+FL+RVSE++WGYT+SY+    FKHFL+D +   Y   G +   H++L +L+D+HK+  I+  G E+L+ P GQ   PPDY  LF
Sbjct:  291 PLRPVSRDVIVRWFKEEQLPRRAGFERNTKFIAPWFHGIISREDAEALLENMTEGAFLVRVSEKIWGYTLSYRLQKGFKHFLVDASGDFYSFLGVDPNRHATLTDLVDFHKEEIITVSGGELLQEPCGQRDSPPDYHLLF 430

The following BLAST results are available for this feature:

BLAST of TCONS_00051232 vs. Swiss-Prot (Human)

BLAST of TCONS_00051232 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SH24B	9.911e-33	44.29	SH2 domain-containing protein 4B OS=Homo sapiens G...	[more]

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TCONS_00051232 (transcript) - C. hemisphaerica