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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051240 ID=TCONS_00051240|Name=TCONS_00051240|organism=Clytia hemisphaerica|type=transcript|length=3205bpRun BLAST on NCBI transcript from alignment at scaffold_20:171348..187584- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051240 ID=TCONS_00051240|Name=TCONS_00051240|organism=Clytia hemisphaerica|type=transcript|length=16237bp|location=Sequence derived from alignment at scaffold_20:171348..187584- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00051240 vs. Swiss-Prot (Human)
Match: SC24C (Protein transport protein Sec24C OS=Homo sapiens GN=SEC24C PE=1 SV=3) HSP 1 Score: 709.138 bits (1829), Expect = 0.000e+0 Identity = 328/586 (55.97%), Postives = 436/586 (74.40%), Query Frame = 2
Query: 1445 KIDPNQMPNPIQVMSEDQASFDNEIFQTSSRGKVPPLVSTKCRIQDDGNCSPRYMRSSVYSIPCNQDMLKESGIPMAIVTTPFAKIPEDEHQLRYVDQGPTGPIRCNRCKAYMNPFMQFIDGGRRFVCNICSHSSEVPAEYFCHLDHQGRRVDMYERPELCFGSYEYIATADYCKDSKLPQPPAFIFMIDVSYQSMQQGMVRILSSELHKLLDELPKDIGMNESVIKVGFVTYSTQLHFYNVKANLAQPQMMVVADLEDSFVPLLDGFLVDYREAKAVVDSLLEMLPEMFKDTRETDVVLGPVVAAGLEALKSAGISGKLYIFHSSLPITEAPGKLKNREDRKLLNTDKEKTILVPQGNYYMNMAKECVNNGVSIDLFLFPNSYVDVATIGLMVTQTGGQVYRYSYFKENTHGQQFVNDLYKNFKREIGFDAIMRLRCSXYKNFKREIGFDAIMRLRCSTGLRPVEFFGSFVMNNTTDVELATIDSDKAIVIEIKHDDKIPEDGVAYVQNALLYTSASGQRRLRIHNLAFATCSQLADLYRCCELDTAVNYFTKYALRQVLSSNPQSIRENLVQKCVQILACYRQH 3202
++DP+ +P+PIQV+ +D+ + E F T RG+VPPLV+T ++D GN SPRY+R + Y+IPC DM K++ +P+A V P A++P +E VD G +GP+RCNRCKAYM PFMQFI+GGRRF C CS ++VP +YF HLDH G+RVD Y+RPEL GSYE++AT DYCK++K P PPAFIFMIDVSY +++ G+VR+L EL LLD LP++ G ES I+VGFVTY+ LHFYNVK++LAQPQMMVV+D+ D FVPLLDGFLV+ E++AV+ SLL+ +PEMF DTRET+ V PV+ AG+EALK+A +GKL++FH+SLPI EAPGKLKNR+DRKL+NTDKEKT+ PQ Y +AKECV G +DLFLFPN YVDVAT+ ++ TGG VY+Y+ F+ ++F++DL ++ ++ +GFD A+MR+R STG+R V+FFG+F M+NTTDVELA +D DK + +E KHDD++ E+ A +Q ALLYTS +GQRRLRIHNLA C+QLADLYR CE DT +NY K+A R VL+S +++R+ L+ +C QILACYR++
Sbjct: 320 RLDPDAIPSPIQVIEDDRNNRGTEPFVTGVRGQVPPLVTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDRPELSLGSYEFLATVDYCKNNKFPSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVVSDVADMFVPLLDGFLVNVNESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKAAECAGKLFLFHTSLPIAEAPGKLKNRDDRKLINTDKEKTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSVYKYASFQVENDQERFLSDLRRDVQKVVGFD--------------------AVMRVRTSTGIRAVDFFGAFYMSNTTDVELAGLDGDKTVTVEFKHDDRLNEESGALLQCALLYTSCAGQRRLRIHNLALNCCTQLADLYRNCETDTLINYMAKFAYRGVLNSPVKAVRDTLITQCAQILACYRKN 885 The following BLAST results are available for this feature:
BLAST of TCONS_00051240 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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