TCONS_00051241 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051241
Unique NameTCONS_00051241
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length251

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051241 ID=TCONS_00051241|Name=TCONS_00051241|organism=Clytia hemisphaerica|type=transcript|length=251bp
aTAAACTTTTCCACACGACGAACAAAGCACTGATGTCGCTATAAGGAGCC
GcgaaatccttttttttttcgaattactttttctaaaactGGTTTTTCTC
TTTACAGATTTGACCTGACGAGGAGACTCTTGGCTCAACCTTTCCTTTAT
CCTTTATCCTGCACGATTGATTCTGCTAGCTTCAGATTGACTTCCTTTCA
ACTTCGTTCGGTTCAGAACACACATCTCCACTGCAAAAGTGAAATACTGT
G
Run BLAST on NCBI

transcript from alignment at scaffold_20:195886..196314-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051241 ID=TCONS_00051241|Name=TCONS_00051241|organism=Clytia hemisphaerica|type=transcript|length=429bp|location=Sequence derived from alignment at scaffold_20:195886..196314- (Clytia hemisphaerica)
ATAAACTTTTCCACACGACGAACAAAGCACTGATGTCGCTATAAGGAGCC
GCGAAATCCTTTTTTTTTTCGAATTACTTTTTCTAAAACTGGTTTTTCTC
TTTACAGATTTGACCTGACGAGGAGACTCTTGGCTCAACCTTTCCTTTAT
CCTTTATCCTGCACGATTGATTCTGCTAGCTTCAGGTAACTATTGTTATT
ATCCTACCCTGTACTGTGTTGTATTTCTTTTGTGTTTATCAAGTAGACTA
GAATGGATGTTATTTGGTCCTATCAGATTGGACCATGGTTAATATATTAT
ACAAAAATTAGCATTCTCCTCCCTTAACTCTCCTAACTTAACCCTGTTTT
CTTTTCATTCTAGATTGACTTCCTTTCAACTTCGTTCGGTTCAGAACACA
CATCTCCACTGCAAAAGTGAAATACTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032478XLOC_032478Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051241-exon-scaffold_20-1575043694:196130..196314TCONS_00051241-exon-scaffold_20-1575043694:196130..196314Clytia hemisphaericaexon
TCONS_00051241-exon-scaffold_20-1575043694:195886..195951TCONS_00051241-exon-scaffold_20-1575043694:195886..195951Clytia hemisphaericaexon
TCONS_00051241-exon-scaffold_20-1510915933:196130..196314TCONS_00051241-exon-scaffold_20-1510915933:196130..196314Clytia hemisphaericaexon
TCONS_00051241-exon-scaffold_20-1510915933:195886..195951TCONS_00051241-exon-scaffold_20-1510915933:195886..195951Clytia hemisphaericaexon
TCONS_00051241-exon-scaffold_20-1491911889:196130..196314TCONS_00051241-exon-scaffold_20-1491911889:196130..196314Clytia hemisphaericaexon
TCONS_00051241-exon-scaffold_20-1491911889:195886..195951TCONS_00051241-exon-scaffold_20-1491911889:195886..195951Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:195886..196314 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
27.9206	22.0759	12.8161	9.19497	31.5467	26.5369	26.1946	16.3487	10.8102	6.30128	4.58713	6.53337	6.02242	5.21195	5.14192	5.51806	11.3297	11.6126	6.41735	4.19706	6.56641	7.47335	16.4392	18.0921	15.3937	19.5231	4.13889	11.0428	15.9136	5.12004
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051241 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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