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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051256 ID=TCONS_00051256|Name=TCONS_00051256|organism=Clytia hemisphaerica|type=transcript|length=1580bp
aaaaacaatgatcccATTTAGCGTGAAAATTCTCTAAATATTACATACAG
AAATAAATAAGATCAATCAAATTGACTAGAGGTGGAAATATTTAGGTATC
ACTGAAGCTTCTACACATGTCCCTTTCTCTAAAATCATTCATCATGTCAT
GACAATCTGGACTAAGTCGTTTTAGCATAACTGACATATCAAATGGTCTC
AATATTGTGAGATCGTTCAATGTCCGAACTCTGCTCAAGGGAACGTATGA
AAAACTGATGTCAACATTTTTCATCCCTTTTGAAGGAACAAGGTCGACCA
CAACTTTTGAAAGTGTTTGCCCTTGACTCTTATGCGCTGTACAGGCAAAC
GCAGGAACAAGAGGAAAATGAACCCGCTTCACGTTGACTTTTTTTTTCCC
GAATTGGACTGTAAAAGATCCGTTCAAAGGAAAAATGGGAACATGATTTC
TTGGTAATCCATCCAGTGGTTCAATACAGACATCTTTAAACTCGATGATA
ATGAACGATAGCTGTTGATCCAAACGGGTGATTCCAGTATTTTCTTCAGG
TGGATTTTGTATGGGAATCGATCTCACGATACCAGTCGTCCCATTCGTCA
AACCCAGTTCTGTCGAAATGTTTTTTGTTAGGAACACAGGCATACCAATG
AATAACGGCAATTCATTCAAAAGGCCGTCTGTTTTTGTAGTTGGTAGAGC
CTTCATTATTTCTAATTCATTTTTAGATAAGGAACCTTTGATCTTATCCG
TTGCCACTGAAACGAACACATTTTGGGAATTCGAATGAtgttttgtaaat
aaaagaTTTATTTCCTGAACAAGTTTATTCCCAGGTACGATGATTGGATC
ACTTGACGTTTGATTTAGAGCACCTCCCAAAATTCTTGTTGACAAAATCA
AGTGGTCGGCCTCGGAGCAATTACCTTAAAGATTGAGATGGACAGTTTCT
AATTAGACAATGAATACTTGTTTTTCAAACCGTAAATGCAACGAAATGTA
AATTTTCtcgttttgtatatattttgatttaaaaagaccTTGTTAAAATG
ACTCTTACCCTCTCTAAGACGATTAAGTACATCTTGGTAAACATGATCTG
TCACATGCATTTGTTCATCGAGTAGCATAATGTGGGTGAGCTGCTTCCAT
ATAGAACGTCCAAGTTGCTTTTGAACGTCAGATTCCTTAGTTGATGGTTC
CAATGTATCTTTGTTGTAGCTGTAATATAGTGGTGTATCTAATACAGGCG
GGAATTGGGTAAAATCGCCAAAACAGAAAATATCAACGCCACCAAAAGGA
ACACTTGGGTCATTATGTTTTTCACAGGTAATGTTACGACTCAACTTTGC
TAGTAATCGACAGCCAACCATTGATACTTCGTCTAGTAAAACAGTGTTAA
CACCATTCCATTTCTTCTCAAGTGTTGAAATGTTGGAATTTCTTAGTCCA
GCAAGGGTCGTTATGGTATTGCCACCGATATGTTTTGCTGCCGTCCCAGT
AAAAGCACAAAGGCGTAGACGAACACGTAAATTGATTCTGTCGTGAAAAT
CCACGACAGCCTTTATCACTTGACTTTTTC Run BLAST on NCBI protein sequence of TCONS_00051256-protein >TCONS_00051256-protein ID=TCONS_00051256-protein|Name=TCONS_00051256-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
KSQVIKAVVDFHDRINLRVRLRLCAFTGTAAKHIGGNTITTLAGLRNSNI
STLEKKWNGVNTVLLDEVSMVGCRLLAKLSRNITCEKHNDPSVPFGGVDI
FCFGDFTQFPPVLDTPLYYSYNKDTLEPSTKESDVQKQLGRSIWKQLTHI
MLLDEQMHVTDHVYQDVLNRLREGKSHFNKVFLNQNIYKTRKFTFRCIYG
LKNKYSLSN Run BLAST on NCBI transcript from alignment at scaffold_20:1261..2840 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051256 ID=TCONS_00051256|Name=TCONS_00051256|organism=Clytia hemisphaerica|type=transcript|length=1580bp|location=Sequence derived from alignment at scaffold_20:1261..2840 (Clytia hemisphaerica)
GAAAAAGTCAAGTGATAAAGGCTGTCGTGGATTTTCACGACAGAATCAAT
TTACGTGTTCGTCTACGCCTTTGTGCTTTTACTGGGACGGCAGCAAAACA
TATCGGTGGCAATACCATAACGACCCTTGCTGGACTAAGAAATTCCAACA
TTTCAACACTTGAGAAGAAATGGAATGGTGTTAACACTGTTTTACTAGAC
GAAGTATCAATGGTTGGCTGTCGATTACTAGCAAAGTTGAGTCGTAACAT
TACCTGTGAAAAACATAATGACCCAAGTGTTCCTTTTGGTGGCGTTGATA
TTTTCTGTTTTGGCGATTTTACCCAATTCCCGCCTGTATTAGATACACCA
CTATATTACAGCTACAACAAAGATACATTGGAACCATCAACTAAGGAATC
TGACGTTCAAAAGCAACTTGGACGTTCTATATGGAAGCAGCTCACCCACA
TTATGCTACTCGATGAACAAATGCATGTGACAGATCATGTTTACCAAGAT
GTACTTAATCGTCTTAGAGAGGGTAAGAGTCATTTTAACAAggtcttttt
aaatcaaaatatatacaaaacgaGAAAATTTACATTTCGTTGCATTTACG
GTTTGAAAAACAAGTATTCATTGTCTAATTAGAAACTGTCCATCTCAATC
TTTAAGGTAATTGCTCCGAGGCCGACCACTTGATTTTGTCAACAAGAATT
TTGGGAGGTGCTCTAAATCAAACGTCAAGTGATCCAATCATCGTACCTGG
GAATAAACTTGTTCAGGAAATAAAtcttttatttacaaaacaTCATTCGA
ATTCCCAAAATGTGTTCGTTTCAGTGGCAACGGATAAGATCAAAGGTTCC
TTATCTAAAAATGAATTAGAAATAATGAAGGCTCTACCAACTACAAAAAC
AGACGGCCTTTTGAATGAATTGCCGTTATTCATTGGTATGCCTGTGTTCC
TAACAAAAAACATTTCGACAGAACTGGGTTTGACGAATGGGACGACTGGT
ATCGTGAGATCGATTCCCATACAAAATCCACCTGAAGAAAATACTGGAAT
CACCCGTTTGGATCAACAGCTATCGTTCATTATCATCGAGTTTAAAGATG
TCTGTATTGAACCACTGGATGGATTACCAAGAAATCATGTTCCCATTTTT
CCTTTGAACGGATCTTTTACAGTCCAATTCGGGAAAAAAAAAGTCAACGT
GAAGCGGGTTCATTTTCCTCTTGTTCCTGCGTTTGCCTGTACAGCGCATA
AGAGTCAAGGGCAAACACTTTCAAAAGTTGTGGTCGACCTTGTTCCTTCA
AAAGGGATGAAAAATGTTGACATCAGTTTTTCATACGTTCCCTTGAGCAG
AGTTCGGACATTGAACGATCTCACAATATTGAGACCATTTGATATGTCAG
TTATGCTAAAACGACTTAGTCCAGATTGTCATGACATGATGAATGATTTT
AGAGAAAGGGACATGTGTAGAAGCTTCAGTGATACCTAAATATTTCCACC
TCTAGTCAATTTGATTGATCTTATTTATTTCTGTATGTAATATTTAGAGA
ATTTTCACGCTAAATgggatcattgttttt Coding sequence (CDS) from alignment at scaffold_20:1261..2840 >TCONS_00051256 ID=TCONS_00051256|Name=TCONS_00051256|organism=Clytia hemisphaerica|type=CDS|length=630bp|location=Sequence derived from alignment at scaffold_20:1261..2840 (Clytia hemisphaerica)
AAAAGTCAAGTGATAAAGGCTGTCGTGGATTTTCACGACAGAATCAATTT
ACGTGTTCGTCTACGCCTTTGTGCTTTTACTGGGACGGCAGCAAAACATA
TCGGTGGCAATACCATAACGACCCTTGCTGGACTAAGAAATTCCAACATT
TCAACACTTGAGAAGAAATGGAATGGTGTTAACACTGTTTTACTAGACGA
AGTATCAATGGTTGGCTGTCGATTACTAGCAAAGTTGAGTCGTAACATTA
CCTGTGAAAAACATAATGACCCAAGTGTTCCTTTTGGTGGCGTTGATATT
TTCTGTTTTGGCGATTTTACCCAATTCCCGCCTGTATTAGATACACCACT
ATATTACAGCTACAACAAAGATACATTGGAACCATCAACTAAGGAATCTG
ACGTTCAAAAGCAACTTGGACGTTCTATATGGAAGCAGCTCACCCACATT
ATGCTACTCGATGAACAAATGCATGTGACAGATCATGTTTACCAAGATGT
ACTTAATCGTCTTAGAGAGGGTAAGAGTCATTTTAACAAggtctttttaa
atcaaaatatatacaaaacgaGAAAATTTACATTTCGTTGCATTTACGGT
TTGAAAAACAAGTATTCATTGTCTAATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051256-exon-scaffold_20-1491911889:1261..2840 | TCONS_00051256-exon-scaffold_20-1491911889:1261..2840 | Clytia hemisphaerica | exon |
| TCONS_00051256-exon-scaffold_20-1510915933:1261..2840 | TCONS_00051256-exon-scaffold_20-1510915933:1261..2840 | Clytia hemisphaerica | exon |
| TCONS_00051256-exon-scaffold_20-1575043694:1261..2840 | TCONS_00051256-exon-scaffold_20-1575043694:1261..2840 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_20 | supercontig | scaffold_20:1261..2840 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR010285 | DNA_helicase_pif1-like |
| IPR027417 | P-loop_NTPase |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006281 | DNA repair |
| GO:0000723 | telomere maintenance |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003678 | DNA helicase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006281 |
DNA repair |
| biological_process |
GO:0000723 |
telomere maintenance |
| molecular_function |
GO:0003678 |
DNA helicase activity |
Blast
The following BLAST results are available for this feature:
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