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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051258 ID=TCONS_00051258|Name=TCONS_00051258|organism=Clytia hemisphaerica|type=transcript|length=1051bp
aatttttgaaccagatattttttggaaaacattttcggtactttaacaac
cctgataaataaaaaatttatttttattttaccgaccgaccgacccatat
tttgctaacgatctgcctgtagaacaacaaattaaattggtctcgcctac
gTAGTAAACGAaacaattttacatttttcagctttcagtATGTGACATTC
TTTTTaattataagaaccagtaaatttttgacgattacagatctgtaaag
cccgaagggctagatagagtGCTTTGGTCGAAAAGTGTGCCTTGGttcgg
taggaaatcctacctaggtcacgtgacattacaataaaatTCCACTGCTT
GACCAATTAGAACTTCGCAGGTTTTCAAACACAATAGTAACAATATTTCT
CAGTGTAAAAGGTTTTAGGTTTAGTGACTTTACTACTACCTGTAACTAAT
GTTTTTAAAGTGTGAGCCATTCCAGGCTTTGCATAttattgttcttatac
aaaaaagaGTGTATCCATCCAGCAGTTCAAGtcaacagtgcaattaaaac
aGGATTCAATAAATCCATCTTTAAAAATACTCTCAAATCAAATTCCAAGA
TATTCTTTCAGACAACGAGGAAGATTTCCAGCCAAATATTTGTCATCAAA
ATGTTTCAAACACGCTAATCGAGCCCATTGTTTCAAATTTGTCTCGCTGT
TTCTGAATAATcctgtttttaaaattttagggAAATAATCTGGTCGATAG
CCAGGATAGAGATCTTCACCGATCATGACAGCAAGTTCTTGCAAGTTCCA
ATTGAAGTTAAAGAATCTTACTTGATAATCAGTCTCAAATTTGTACACTA
ATTTGCCAGTGCTGATGTCAAATAATTGAACACTGTTTAACACATCCAAA
TACAATTTTTCTTTCTGAATACAAAGATATCGTTTGTCAAAGCATCGGAT
TAAATCATACTTAACAGGAGAAGGTATTTCAAAAGTATTTAAAGTATCCA
TTCCATAATTGGTGAAATTGCAAATACCCATTTCCAAATCAGTCCAAGGA
A Run BLAST on NCBI protein sequence of TCONS_00051258-protein >TCONS_00051258-protein ID=TCONS_00051258-protein|Name=TCONS_00051258-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
PWTDLEMGICNFTNYGMDTLNTFEIPSPVKYDLIRCFDKRYLCIQKEKLY
LDVLNSVQLFDISTGKLVYKFETDYQVRFFNFNWNLQELAVMIGEDLYPG
YRPDYFPKILKTGLFRNSETNLKQWARLACLKHFDDKYLAGNLPRCLKEY
LGI Run BLAST on NCBI transcript from alignment at scaffold_20:32521..33571 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051258 ID=TCONS_00051258|Name=TCONS_00051258|organism=Clytia hemisphaerica|type=transcript|length=1051bp|location=Sequence derived from alignment at scaffold_20:32521..33571 (Clytia hemisphaerica)
TTCCTTGGACTGATTTGGAAATGGGTATTTGCAATTTCACCAATTATGGA
ATGGATACTTTAAATACTTTTGAAATACCTTCTCCTGTTAAGTATGATTT
AATCCGATGCTTTGACAAACGATATCTTTGTATTCAGAAAGAAAAATTGT
ATTTGGATGTGTTAAACAGTGTTCAATTATTTGACATCAGCACTGGCAAA
TTAGTGTACAAATTTGAGACTGATTATCAAGTAAGATTCTTTAACTTCAA
TTGGAACTTGCAAGAACTTGCTGTCATGATCGGTGAAGATCTCTATCCTG
GCTATCGACCAGATTATTTccctaaaattttaaaaacaggATTATTCAGA
AACAGCGAGACAAATTTGAAACAATGGGCTCGATTAGCGTGTTTGAAACA
TTTTGATGACAAATATTTGGCTGGAAATCTTCCTCGTTGTCTGAAAGAAT
ATCTTGGAATTTGATTTGAGAGTATTTTTAAAGATGGATTTATTGAATCC
tgttttaattgcactgttgaCTTGAACTGCTGGATGGATACACtcttttt
tgtataagaacaataaTATGCAAAGCCTGGAATGGCTCACACTTTAAAAA
CATTAGTTACAGGTAGTAGTAAAGTCACTAAACCTAAAACCTTTTACACT
GAGAAATATTGTTACTATTGTGTTTGAAAACCTGCGAAGTTCTAATTGGT
CAAGCAGTGGAattttattgtaatgtcacgtgacctaggtaggatttcct
accgaaCCAAGGCACACTTTTCGACCAAAGCactctatctagcccttcgg
gctttacagatctgtaatcgtcaaaaatttactggttcttataattAAAA
AGAATGTCACATactgaaagctgaaaaatgtaaaattgttTCGTTTACTA
cgtaggcgagaccaatttaatttgttgttctacaggcagatcgttagcaa
aatatgggtcggtcggtcggtaaaataaaaataaattttttatttatcag
ggttgttaaagtaccgaaaatgttttccaaaaaatatctggttcaaaaat
t Coding sequence (CDS) from alignment at scaffold_20:32521..33571 >TCONS_00051258 ID=TCONS_00051258|Name=TCONS_00051258|organism=Clytia hemisphaerica|type=CDS|length=462bp|location=Sequence derived from alignment at scaffold_20:32521..33571 (Clytia hemisphaerica)
CCTTGGACTGATTTGGAAATGGGTATTTGCAATTTCACCAATTATGGAAT
GGATACTTTAAATACTTTTGAAATACCTTCTCCTGTTAAGTATGATTTAA
TCCGATGCTTTGACAAACGATATCTTTGTATTCAGAAAGAAAAATTGTAT
TTGGATGTGTTAAACAGTGTTCAATTATTTGACATCAGCACTGGCAAATT
AGTGTACAAATTTGAGACTGATTATCAAGTAAGATTCTTTAACTTCAATT
GGAACTTGCAAGAACTTGCTGTCATGATCGGTGAAGATCTCTATCCTGGC
TATCGACCAGATTATTTccctaaaattttaaaaacaggATTATTCAGAAA
CAGCGAGACAAATTTGAAACAATGGGCTCGATTAGCGTGTTTGAAACATT
TTGATGACAAATATTTGGCTGGAAATCTTCCTCGTTGTCTGAAAGAATAT
CTTGGAATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051258-exon-scaffold_20-1491911889:32521..33571 | TCONS_00051258-exon-scaffold_20-1491911889:32521..33571 | Clytia hemisphaerica | exon |
| TCONS_00051258-exon-scaffold_20-1510915933:32521..33571 | TCONS_00051258-exon-scaffold_20-1510915933:32521..33571 | Clytia hemisphaerica | exon |
| TCONS_00051258-exon-scaffold_20-1575043694:32521..33571 | TCONS_00051258-exon-scaffold_20-1575043694:32521..33571 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_20 | supercontig | scaffold_20:32521..33571 . |
Blast
The following BLAST results are available for this feature:
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