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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051262 ID=TCONS_00051262|Name=TCONS_00051262|organism=Clytia hemisphaerica|type=transcript|length=1222bp
TTTCCGtttattttcctcgcctaaaagCTCGGAAATTATTGTatggaaaa
atctcggaactcgtaagatatttttcatattgtacttgtaactgtccgat
aactattacatattgaACTACACGCCTTTTCATCTGAATAGtgcttataa
gaatatcttaagaGTGAGATTTTGTGAATTGACAAGATAATAGGGTGGCA
AAAATCAAAGGAGGCATAATTTTCAGCAGGAGATGACTTGTTGCGTTTAT
TACGCGTAAAATGTTCTCGTTAACATTCAAACTAACATCGCAAAAAAATT
CGAAGATTCCCTCTCTTTAAGATCTCCTTCTCAAAATAAGAGCGTGTTAA
GAATATCTTGCCCTCGGATTCGGAAATTTCCTAAGAATACTTTCACACcc
tcagcaaaaaaaattattcttataaaaaagaagccTGTATAAGTTGAAAT
ctggggatgagctggagtttttacaagatacttcactaattggtcattta
aagtgatagaaatgacgcgttctttagaaaaagtaataagattcttttat
tacatcttaacgaccaaccaaatcaaataagagcttgttaaaactccagc
ttgtcccaaaatCTGGAACATCTTCTTTGGAATGTAGtctattaccgagt
ttatgtatgtgtgtttttctgcgacgaaggcggtaaggttctaatttgtc
taaatcctgactgactgaggacgatggtaaatcagcactttcgccgtcct
cgattttgcgggtcaaatattccaaatcgcttcggtccctttaccgtcct
caaaagtgccaatatataaactcgctattgatACAAATTGGATAACTTGT
TGCAGTGTTGCTGGTTTTGAAGCATTCGTATTGTTTTTTCCTCGAACATT
CGGGAATATTTCCTATGACTAAAATCCTCTCTTCTGTATTGTTATTGTCG
GTTAGTAAACTAATGTAGAGGTTTAAATATCAAAAACCTTGTCANTTGAT
GacatcaaaaatatttgtttacagAATTCTGGTCACCATAATAGAAAGTA
AATTCGTTGCTTACCAtggaatttaaaataaaaaatatcaaatatctttA
TATGCGATAGGAAAGAGCATGATGAAAATCTGGTAAAGAAAGTCATATAC
AAATCGATTTGGTCGCAACAATCCTGTTCCCCTTGagacaattttttatt
tgagtaaCCTTTCGATTTTTTC Run BLAST on NCBI transcript from alignment at scaffold_20:196495..197716 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051262 ID=TCONS_00051262|Name=TCONS_00051262|organism=Clytia hemisphaerica|type=transcript|length=1222bp|location=Sequence derived from alignment at scaffold_20:196495..197716 (Clytia hemisphaerica)
GAAAAAATCGAAAGGttactcaaataaaaaattgtctCAAGGGGAACAGG
ATTGTTGCGACCAAATCGATTTGTATATGACTTTCTTTACCAGATTTTCA
TCATGCTCTTTCCTATCGCATATaaagatatttgatattttttattttaa
attccaTGGTAAGCAACGAATTTACTTTCTATTATGGTGACCAGAATTct
gtaaacaaatatttttgatgtCATCAANTGACAAGGTTTTTGATATTTAA
ACCTCTACATTAGTTTACTAACCGACAATAACAATACAGAAGAGAGGATT
TTAGTCATAGGAAATATTCCCGAATGTTCGAGGAAAAAACAATACGAATG
CTTCAAAACCAGCAACACTGCAACAAGTTATCCAATTTGTatcaatagcg
agtttatatattggcacttttgaggacggtaaagggaccgaagcgatttg
gaatatttgacccgcaaaatcgaggacggcgaaagtgctgatttaccatc
gtcctcagtcagtcaggatttagacaaattagaaccttaccgccttcgtc
gcagaaaaacacacatacataaactcggtaatagaCTACATTCCAAAGAA
GATGTTCCAGattttgggacaagctggagttttaacaagctcttatttga
tttggttggtcgttaagatgtaataaaagaatcttattactttttctaaa
gaacgcgtcatttctatcactttaaatgaccaattagtgaagtatcttgt
aaaaactccagctcatccccagATTTCAACTTATACAggcttctttttta
taagaataattttttttgctgaggGTGTGAAAGTATTCTTAGGAAATTTC
CGAATCCGAGGGCAAGATATTCTTAACACGCTCTTATTTTGAGAAGGAGA
TCTTAAAGAGAGGGAATCTTCGAATTTTTTTGCGATGTTAGTTTGAATGT
TAACGAGAACATTTTACGCGTAATAAACGCAACAAGTCATCTCCTGCTGA
AAATTATGCCTCCTTTGATTTTTGCCACCCTATTATCTTGTCAATTCACA
AAATCTCACtcttaagatattcttataagcaCTATTCAGATGAAAAGGCG
TGTAGTtcaatatgtaatagttatcggacagttacaagtacaatatgaaa
aatatcttacgagttccgagatttttccatACAATAATTTCCGAGctttt
aggcgaggaaaataaaCGGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051262-exon-scaffold_20-1491911889:196495..197716 | TCONS_00051262-exon-scaffold_20-1491911889:196495..197716 | Clytia hemisphaerica | exon |
| TCONS_00051262-exon-scaffold_20-1510915933:196495..197716 | TCONS_00051262-exon-scaffold_20-1510915933:196495..197716 | Clytia hemisphaerica | exon |
| TCONS_00051262-exon-scaffold_20-1575043694:196495..197716 | TCONS_00051262-exon-scaffold_20-1575043694:196495..197716 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_20 | supercontig | scaffold_20:196495..197716 . |
Blast
The following BLAST results are available for this feature:
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