TCONS_00051264 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051264
Unique NameTCONS_00051264
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length390

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051264 ID=TCONS_00051264|Name=TCONS_00051264|organism=Clytia hemisphaerica|type=transcript|length=390bp
CATTTTTTTCAACATagcataaaaatcaaaacgaatctaaaatgaaaaat
tcgtCTCTTTTCATGCATTATctgaaaaattaggaaaaaaaagataaaaa
aacgtGGTCATGTGTAATATTTAGCCTCTGTTAGGTTCAAAAAGTCCGAA
ATATCCCAGAATCTGCCTAGTCATGATGACATCAAAGTAACCTGAATCAG
AAGATAACTACAGTAAAGCGTACTCCTGGGAATTACTGTTGAAATGGTAT
GAGATATGACCAGATCACGAAACATTTTTAATCGCAAGAAGCTTGCCCAA
TGCTGACTCAAAATAAATGATAAAGTCGATTTGCTTCAGTGAACGCTACA
ATTAAAcccatgtaattcgaattttcgaGGGAACGAGAat
Run BLAST on NCBI

transcript from alignment at scaffold_20:199680..200069

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051264 ID=TCONS_00051264|Name=TCONS_00051264|organism=Clytia hemisphaerica|type=transcript|length=390bp|location=Sequence derived from alignment at scaffold_20:199680..200069 (Clytia hemisphaerica)
atTCTCGTTCCCtcgaaaattcgaattacatgggTTTAATTGTAGCGTTC
ACTGAAGCAAATCGACTTTATCATTTATTTTGAGTCAGCATTGGGCAAGC
TTCTTGCGATTAAAAATGTTTCGTGATCTGGTCATATCTCATACCATTTC
AACAGTAATTCCCAGGAGTACGCTTTACTGTAGTTATCTTCTGATTCAGG
TTACTTTGATGTCATCATGACTAGGCAGATTCTGGGATATTTCGGACTTT
TTGAACCTAACAGAGGCTAAATATTACACATGACCacgtttttttatctt
ttttttcctaatttttcagATAATGCATGAAAAGAGacgaatttttcatt
ttagattcgttttgatttttatgctATGTTGAAAAAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032491XLOC_032491Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051264-exon-scaffold_20-1491911889:199680..200069TCONS_00051264-exon-scaffold_20-1491911889:199680..200069Clytia hemisphaericaexon
TCONS_00051264-exon-scaffold_20-1510915933:199680..200069TCONS_00051264-exon-scaffold_20-1510915933:199680..200069Clytia hemisphaericaexon
TCONS_00051264-exon-scaffold_20-1575043694:199680..200069TCONS_00051264-exon-scaffold_20-1575043694:199680..200069Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:199680..200069 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.56808	1.9114	1.55353	0.868504	1.05732	2.92428	1.51201	2.59513	0.495521	0.818376	0.595752	0.522165	0.13036	1.08304	1.33561	0.955542	0.588575	1.05572	0	0.436073	0	0.831941	0.898963	1.43025	1.47313	0.939094	0.268768	0.573673	0	0.443309
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051264 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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