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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051269 ID=TCONS_00051269|Name=TCONS_00051269|organism=Clytia hemisphaerica|type=transcript|length=849bp
AAGTAATATAGTttaataaagttaaaaaatgaaaaattgttcCTAAAAAG
TATTTGTTGCTTGGAAGGTGGTAACATTAGATGTAAGATTGTCTGGTCTT
CTTGTTTCAACTTTACCAAAAACTGAGCTTAGTGTTTTTCTTGTATCAGT
GTTCCACAGTAGATAGATAAAAACATCAATGACTGGATTAAGATACGCCA
ACAGACTTGCAATGTCAAATAAAAGAGCGTATTTCAAATTCATTTCAACT
AGAAATCGGAAAATGAAATATGGGATCCAAAGCAGAACAAAGGTTAGAGT
CATCAACGCGCATATTTTAAATGACCTCCTCTGAAGTCTTCGACGACGGT
CATTTTTCTCGTTTTCTAAACGTCGGTTGTCTTGTGCTTGGCTTGTTATC
ACTGTGCATACTGCAGTTGCAATGATTTTCTTCGTCTGTTTTCGAACAAT
TCGAGACAGAAGAAAATTACACGCTACTATTGCTATAATTCCTATAATAT
TGCAAATCACTGGTATAAGAAAACCAAATATGTATATCATAACGCCAACC
AGTATTACCGAAGTCAAAGGAGCAATGACAAGATACAATTTTCGATAAAA
TGTTTCGTTCGACGTGGAATGGAACGGAAAACGGATCGTAAAATACCGTT
CTACCGGTATAAGTGCCGTATAAATAAGTTCGATTCCGACGCATACCATT
AACGCAAGTTCGAATATTCGTACAAAGATAGTATAACCGAGGAACATCCT
GGCTCCGTGGTACGAAAAACGTGTAAACCCAACCATAAAATGAGAAATAA
ACAACACCAAAACCAACAACTGATTTAGAGAGAATCGCCTTGAATTATA Run BLAST on NCBI protein sequence of TCONS_00051269-protein >TCONS_00051269-protein ID=TCONS_00051269-protein|Name=TCONS_00051269-protein|organism=Clytia hemisphaerica|type=polypeptide|length=268bp
YNSRRFSLNQLLVLVLFISHFMVGFTRFSYHGARMFLGYTIFVRIFELAL
MVCVGIELIYTALIPVERYFTIRFPFHSTSNETFYRKLYLVIAPLTSVIL
VGVMIYIFGFLIPVICNIIGIIAIVACNFLLSRIVRKQTKKIIATAVCTV
ITSQAQDNRRLENEKNDRRRRLQRRSFKICALMTLTFVLLWIPYFIFRFL
VEMNLKYALLFDIASLLAYLNPVIDVFIYLLWNTDTRKTLSSVFGKVETR
RPDNLTSNVTTFQATNTF Run BLAST on NCBI transcript from alignment at scaffold_20:238886..239734 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051269 ID=TCONS_00051269|Name=TCONS_00051269|organism=Clytia hemisphaerica|type=transcript|length=849bp|location=Sequence derived from alignment at scaffold_20:238886..239734 (Clytia hemisphaerica)
TATAATTCAAGGCGATTCTCTCTAAATCAGTTGTTGGTTTTGGTGTTGTT
TATTTCTCATTTTATGGTTGGGTTTACACGTTTTTCGTACCACGGAGCCA
GGATGTTCCTCGGTTATACTATCTTTGTACGAATATTCGAACTTGCGTTA
ATGGTATGCGTCGGAATCGAACTTATTTATACGGCACTTATACCGGTAGA
ACGGTATTTTACGATCCGTTTTCCGTTCCATTCCACGTCGAACGAAACAT
TTTATCGAAAATTGTATCTTGTCATTGCTCCTTTGACTTCGGTAATACTG
GTTGGCGTTATGATATACATATTTGGTTTTCTTATACCAGTGATTTGCAA
TATTATAGGAATTATAGCAATAGTAGCGTGTAATTTTCTTCTGTCTCGAA
TTGTTCGAAAACAGACGAAGAAAATCATTGCAACTGCAGTATGCACAGTG
ATAACAAGCCAAGCACAAGACAACCGACGTTTAGAAAACGAGAAAAATGA
CCGTCGTCGAAGACTTCAGAGGAGGTCATTTAAAATATGCGCGTTGATGA
CTCTAACCTTTGTTCTGCTTTGGATCCCATATTTCATTTTCCGATTTCTA
GTTGAAATGAATTTGAAATACGCTCTTTTATTTGACATTGCAAGTCTGTT
GGCGTATCTTAATCCAGTCATTGATGTTTTTATCTATCTACTGTGGAACA
CTGATACAAGAAAAACACTAAGCTCAGTTTTTGGTAAAGTTGAAACAAGA
AGACCAGACAATCTTACATCTAATGTTACCACCTTCCAAGCAACAAATAC
TTTTTAGgaacaatttttcattttttaactttattaaACTATATTACTT Coding sequence (CDS) from alignment at scaffold_20:238886..239734 >TCONS_00051269 ID=TCONS_00051269|Name=TCONS_00051269|organism=Clytia hemisphaerica|type=CDS|length=807bp|location=Sequence derived from alignment at scaffold_20:238886..239734 (Clytia hemisphaerica)
TATAATTCAAGGCGATTCTCTCTAAATCAGTTGTTGGTTTTGGTGTTGTT
TATTTCTCATTTTATGGTTGGGTTTACACGTTTTTCGTACCACGGAGCCA
GGATGTTCCTCGGTTATACTATCTTTGTACGAATATTCGAACTTGCGTTA
ATGGTATGCGTCGGAATCGAACTTATTTATACGGCACTTATACCGGTAGA
ACGGTATTTTACGATCCGTTTTCCGTTCCATTCCACGTCGAACGAAACAT
TTTATCGAAAATTGTATCTTGTCATTGCTCCTTTGACTTCGGTAATACTG
GTTGGCGTTATGATATACATATTTGGTTTTCTTATACCAGTGATTTGCAA
TATTATAGGAATTATAGCAATAGTAGCGTGTAATTTTCTTCTGTCTCGAA
TTGTTCGAAAACAGACGAAGAAAATCATTGCAACTGCAGTATGCACAGTG
ATAACAAGCCAAGCACAAGACAACCGACGTTTAGAAAACGAGAAAAATGA
CCGTCGTCGAAGACTTCAGAGGAGGTCATTTAAAATATGCGCGTTGATGA
CTCTAACCTTTGTTCTGCTTTGGATCCCATATTTCATTTTCCGATTTCTA
GTTGAAATGAATTTGAAATACGCTCTTTTATTTGACATTGCAAGTCTGTT
GGCGTATCTTAATCCAGTCATTGATGTTTTTATCTATCTACTGTGGAACA
CTGATACAAGAAAAACACTAAGCTCAGTTTTTGGTAAAGTTGAAACAAGA
AGACCAGACAATCTTACATCTAATGTTACCACCTTCCAAGCAACAAATAC
TTTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051269-exon-scaffold_20-1491911889:238886..239734 | TCONS_00051269-exon-scaffold_20-1491911889:238886..239734 | Clytia hemisphaerica | exon |
| TCONS_00051269-exon-scaffold_20-1510915933:238886..239734 | TCONS_00051269-exon-scaffold_20-1510915933:238886..239734 | Clytia hemisphaerica | exon |
| TCONS_00051269-exon-scaffold_20-1575043694:238886..239734 | TCONS_00051269-exon-scaffold_20-1575043694:238886..239734 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_20 | supercontig | scaffold_20:238886..239734 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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