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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051270 ID=TCONS_00051270|Name=TCONS_00051270|organism=Clytia hemisphaerica|type=transcript|length=1259bp CCATAGATGAACTTCACCATGGATTTATAATAATCAACCAAAACACAACC AGAGATGAGATCCTCGCACAAGCTTATCATTTCATCACATCTATACGAGA TTTCCAATCTCCAGACATCGACATCCCTAGAACCTCTATCGTTGTTTTCC TCCACAACAATGCAGTTCACCAATACCTCAAAGAACCTTATTTAGAATCA CCATTGTTTGTCAAACGCTTCTTAAACATCAAAGTTGCCATAGCTGTTAA GAATATCAACGATGGGTGCATCCTACCGGTTTTATATCCAATTCGAATAA GAACAAGTCGAGGATTCTTATTGGAGAATgtattttcaatcaatttgtTC AACAATATAAGAGACATCAAAGAGCATCTAAGGACTCAATACGACTTACC AATAGATTGCCAACAACTCCATCACTCACGTGAAAGGAATTTATCAGACG AAGAAACACTATCGAATCTTTACATCAATGATACATTGGATGAAATCCGC GGAacaaataatcaaaacattgtTGAACTAATACTTAATGTCACCGGCAT TTCTGAAGATTGGAAGATTGATGACTTTCTAGAGAAGTATGACACATTTA AGTTTGATctcactttaaactttttgactCAGACGGTAATATTCGAAAGT AATCAGCTAAATGAATTAAAACTCACAACAATTCGAAGCTTGAAAACTTA TTTTGGTCATTCTAAAGGAATACCTATTGGACATCAGTTATGTATGTGTG GAAATCAGATAATACCGAATGATACCTACTTGATGGATATTCCATCTATG GTTAAAGATTGGAATAAAACTATAACCTTAACTGTCGTACTGAAACCACC GTTGGTTGATATCAAACTGAAATATTATGACCGAACGATAGCATTGACTG AAATATCAGAATCTCTTACAATAGGAgagatgaaaacaaaagtacaATCT GAACTACGCATTGATTCGAAGTTTTTAACAATTCTAGTGAACGAAGGAAG AATGCTTAAAGACAATACAAAGCTCTATGAAATCAAGGACCAATCAGGAT TCGAACTCAAAGTGTCAATACTGGTGTATTTACATAAGAAAAAGGATAGC GTAGAAAAGCACTATCATAGAATCAAATTTATCTCCAATACTGTTGATTT TCTTCGCAGAGATCTAGAATCACATCAAAATATGAAACTTCGTGTACGTA gcaaaataatatcaaaagacACATTACTTACGGACTTAGAAAAGTTGACA ATCGCTTTT Run BLAST on NCBI protein sequence of TCONS_00051270-protein >TCONS_00051270-protein ID=TCONS_00051270-protein|Name=TCONS_00051270-protein|organism=Clytia hemisphaerica|type=polypeptide|length=419bp
IDELHHGFIIINQNTTRDEILAQAYHFITSIRDFQSPDIDIPRTSIVVFL HNNAVHQYLKEPYLESPLFVKRFLNIKVAIAVKNINDGCILPVLYPIRIR TSRGFLLENVFSINLFNNIRDIKEHLRTQYDLPIDCQQLHHSRERNLSDE ETLSNLYINDTLDEIRGTNNQNIVELILNVTGISEDWKIDDFLEKYDTFK FDLTLNFLTQTVIFESNQLNELKLTTIRSLKTYFGHSKGIPIGHQLCMCG NQIIPNDTYLMDIPSMVKDWNKTITLTVVLKPPLVDIKLKYYDRTIALTE ISESLTIGEMKTKVQSELRIDSKFLTILVNEGRMLKDNTKLYEIKDQSGF ELKVSILVYLHKKKDSVEKHYHRIKFISNTVDFLRRDLESHQNMKLRVRS KIISKDTLLTDLEKLTIAF Run BLAST on NCBI transcript from alignment at scaffold_20:239927..241185 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051270 ID=TCONS_00051270|Name=TCONS_00051270|organism=Clytia hemisphaerica|type=transcript|length=1259bp|location=Sequence derived from alignment at scaffold_20:239927..241185 (Clytia hemisphaerica) AAAAGCGATTGTCAACTTTTCTAAGTCCGTAAGTAATGTgtcttttgata
ttattttgcTACGTACACGAAGTTTCATATTTTGATGTGATTCTAGATCT
CTGCGAAGAAAATCAACAGTATTGGAGATAAATTTGATTCTATGATAGTG
CTTTTCTACGCTATCCTTTTTCTTATGTAAATACACCAGTATTGACACTT
TGAGTTCGAATCCTGATTGGTCCTTGATTTCATAGAGCTTTGTATTGTCT
TTAAGCATTCTTCCTTCGTTCACTAGAATTGTTAAAAACTTCGAATCAAT
GCGTAGTTCAGATtgtacttttgttttcatctcTCCTATTGTAAGAGATT
CTGATATTTCAGTCAATGCTATCGTTCGGTCATAATATTTCAGTTTGATA
TCAACCAACGGTGGTTTCAGTACGACAGTTAAGGTTATAGTTTTATTCCA
ATCTTTAACCATAGATGGAATATCCATCAAGTAGGTATCATTCGGTATTA
TCTGATTTCCACACATACATAACTGATGTCCAATAGGTATTCCTTTAGAA
TGACCAAAATAAGTTTTCAAGCTTCGAATTGTTGTGAGTTTTAATTCATT
TAGCTGATTACTTTCGAATATTACCGTCTGagtcaaaaagtttaaagtga
gATCAAACTTAAATGTGTCATACTTCTCTAGAAAGTCATCAATCTTCCAA
TCTTCAGAAATGCCGGTGACATTAAGTATTAGTTCAacaatgttttgatt
atttgtTCCGCGGATTTCATCCAATGTATCATTGATGTAAAGATTCGATA
GTGTTTCTTCGTCTGATAAATTCCTTTCACGTGAGTGATGGAGTTGTTGG
CAATCTATTGGTAAGTCGTATTGAGTCCTTAGATGCTCTTTGATGTCTCT
TATATTGTTGAacaaattgattgaaaatacATTCTCCAATAAGAATCCTC
GACTTGTTCTTATTCGAATTGGATATAAAACCGGTAGGATGCACCCATCG
TTGATATTCTTAACAGCTATGGCAACTTTGATGTTTAAGAAGCGTTTGAC
AAACAATGGTGATTCTAAATAAGGTTCTTTGAGGTATTGGTGAACTGCAT
TGTTGTGGAGGAAAACAACGATAGAGGTTCTAGGGATGTCGATGTCTGGA
GATTGGAAATCTCGTATAGATGTGATGAAATGATAAGCTTGTGCGAGGAT
CTCATCTCTGGTTGTGTTTTGGTTGATTATTATAAATCCATGGTGAAGTT
CATCTATGG Coding sequence (CDS) from alignment at scaffold_20:239927..241185 >TCONS_00051270 ID=TCONS_00051270|Name=TCONS_00051270|organism=Clytia hemisphaerica|type=CDS|length=1257bp|location=Sequence derived from alignment at scaffold_20:239927..241185 (Clytia hemisphaerica) AAAAGCGATTGTCAACTTTTCTAAGTCCGTAAGTAATGTgtcttttgata ttattttgcTACGTACACGAAGTTTCATATTTTGATGTGATTCTAGATCT CTGCGAAGAAAATCAACAGTATTGGAGATAAATTTGATTCTATGATAGTG CTTTTCTACGCTATCCTTTTTCTTATGTAAATACACCAGTATTGACACTT TGAGTTCGAATCCTGATTGGTCCTTGATTTCATAGAGCTTTGTATTGTCT TTAAGCATTCTTCCTTCGTTCACTAGAATTGTTAAAAACTTCGAATCAAT GCGTAGTTCAGATtgtacttttgttttcatctcTCCTATTGTAAGAGATT CTGATATTTCAGTCAATGCTATCGTTCGGTCATAATATTTCAGTTTGATA TCAACCAACGGTGGTTTCAGTACGACAGTTAAGGTTATAGTTTTATTCCA ATCTTTAACCATAGATGGAATATCCATCAAGTAGGTATCATTCGGTATTA TCTGATTTCCACACATACATAACTGATGTCCAATAGGTATTCCTTTAGAA TGACCAAAATAAGTTTTCAAGCTTCGAATTGTTGTGAGTTTTAATTCATT TAGCTGATTACTTTCGAATATTACCGTCTGagtcaaaaagtttaaagtga gATCAAACTTAAATGTGTCATACTTCTCTAGAAAGTCATCAATCTTCCAA TCTTCAGAAATGCCGGTGACATTAAGTATTAGTTCAacaatgttttgatt atttgtTCCGCGGATTTCATCCAATGTATCATTGATGTAAAGATTCGATA GTGTTTCTTCGTCTGATAAATTCCTTTCACGTGAGTGATGGAGTTGTTGG CAATCTATTGGTAAGTCGTATTGAGTCCTTAGATGCTCTTTGATGTCTCT TATATTGTTGAacaaattgattgaaaatacATTCTCCAATAAGAATCCTC GACTTGTTCTTATTCGAATTGGATATAAAACCGGTAGGATGCACCCATCG TTGATATTCTTAACAGCTATGGCAACTTTGATGTTTAAGAAGCGTTTGAC AAACAATGGTGATTCTAAATAAGGTTCTTTGAGGTATTGGTGAACTGCAT TGTTGTGGAGGAAAACAACGATAGAGGTTCTAGGGATGTCGATGTCTGGA GATTGGAAATCTCGTATAGATGTGATGAAATGATAAGCTTGTGCGAGGAT CTCATCTCTGGTTGTGTTTTGGTTGATTATTATAAATCCATGGTGAAGTT CATCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00051270-exon-scaffold_20-1491911889:239927..241185 | TCONS_00051270-exon-scaffold_20-1491911889:239927..241185 | Clytia hemisphaerica | exon |
TCONS_00051270-exon-scaffold_20-1510915933:239927..241185 | TCONS_00051270-exon-scaffold_20-1510915933:239927..241185 | Clytia hemisphaerica | exon |
TCONS_00051270-exon-scaffold_20-1575043694:239927..241185 | TCONS_00051270-exon-scaffold_20-1575043694:239927..241185 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_20 | supercontig | scaffold_20:239927..241185 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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