TCONS_00051270 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051270
Unique NameTCONS_00051270
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1259

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051270 ID=TCONS_00051270|Name=TCONS_00051270|organism=Clytia hemisphaerica|type=transcript|length=1259bp
CCATAGATGAACTTCACCATGGATTTATAATAATCAACCAAAACACAACC
AGAGATGAGATCCTCGCACAAGCTTATCATTTCATCACATCTATACGAGA
TTTCCAATCTCCAGACATCGACATCCCTAGAACCTCTATCGTTGTTTTCC
TCCACAACAATGCAGTTCACCAATACCTCAAAGAACCTTATTTAGAATCA
CCATTGTTTGTCAAACGCTTCTTAAACATCAAAGTTGCCATAGCTGTTAA
GAATATCAACGATGGGTGCATCCTACCGGTTTTATATCCAATTCGAATAA
GAACAAGTCGAGGATTCTTATTGGAGAATgtattttcaatcaatttgtTC
AACAATATAAGAGACATCAAAGAGCATCTAAGGACTCAATACGACTTACC
AATAGATTGCCAACAACTCCATCACTCACGTGAAAGGAATTTATCAGACG
AAGAAACACTATCGAATCTTTACATCAATGATACATTGGATGAAATCCGC
GGAacaaataatcaaaacattgtTGAACTAATACTTAATGTCACCGGCAT
TTCTGAAGATTGGAAGATTGATGACTTTCTAGAGAAGTATGACACATTTA
AGTTTGATctcactttaaactttttgactCAGACGGTAATATTCGAAAGT
AATCAGCTAAATGAATTAAAACTCACAACAATTCGAAGCTTGAAAACTTA
TTTTGGTCATTCTAAAGGAATACCTATTGGACATCAGTTATGTATGTGTG
GAAATCAGATAATACCGAATGATACCTACTTGATGGATATTCCATCTATG
GTTAAAGATTGGAATAAAACTATAACCTTAACTGTCGTACTGAAACCACC
GTTGGTTGATATCAAACTGAAATATTATGACCGAACGATAGCATTGACTG
AAATATCAGAATCTCTTACAATAGGAgagatgaaaacaaaagtacaATCT
GAACTACGCATTGATTCGAAGTTTTTAACAATTCTAGTGAACGAAGGAAG
AATGCTTAAAGACAATACAAAGCTCTATGAAATCAAGGACCAATCAGGAT
TCGAACTCAAAGTGTCAATACTGGTGTATTTACATAAGAAAAAGGATAGC
GTAGAAAAGCACTATCATAGAATCAAATTTATCTCCAATACTGTTGATTT
TCTTCGCAGAGATCTAGAATCACATCAAAATATGAAACTTCGTGTACGTA
gcaaaataatatcaaaagacACATTACTTACGGACTTAGAAAAGTTGACA
ATCGCTTTT
Run BLAST on NCBI

protein sequence of TCONS_00051270-protein

>TCONS_00051270-protein ID=TCONS_00051270-protein|Name=TCONS_00051270-protein|organism=Clytia hemisphaerica|type=polypeptide|length=419bp
IDELHHGFIIINQNTTRDEILAQAYHFITSIRDFQSPDIDIPRTSIVVFL
HNNAVHQYLKEPYLESPLFVKRFLNIKVAIAVKNINDGCILPVLYPIRIR
TSRGFLLENVFSINLFNNIRDIKEHLRTQYDLPIDCQQLHHSRERNLSDE
ETLSNLYINDTLDEIRGTNNQNIVELILNVTGISEDWKIDDFLEKYDTFK
FDLTLNFLTQTVIFESNQLNELKLTTIRSLKTYFGHSKGIPIGHQLCMCG
NQIIPNDTYLMDIPSMVKDWNKTITLTVVLKPPLVDIKLKYYDRTIALTE
ISESLTIGEMKTKVQSELRIDSKFLTILVNEGRMLKDNTKLYEIKDQSGF
ELKVSILVYLHKKKDSVEKHYHRIKFISNTVDFLRRDLESHQNMKLRVRS
KIISKDTLLTDLEKLTIAF
Run BLAST on NCBI

transcript from alignment at scaffold_20:239927..241185

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051270 ID=TCONS_00051270|Name=TCONS_00051270|organism=Clytia hemisphaerica|type=transcript|length=1259bp|location=Sequence derived from alignment at scaffold_20:239927..241185 (Clytia hemisphaerica)
AAAAGCGATTGTCAACTTTTCTAAGTCCGTAAGTAATGTgtcttttgata ttattttgcTACGTACACGAAGTTTCATATTTTGATGTGATTCTAGATCT CTGCGAAGAAAATCAACAGTATTGGAGATAAATTTGATTCTATGATAGTG CTTTTCTACGCTATCCTTTTTCTTATGTAAATACACCAGTATTGACACTT TGAGTTCGAATCCTGATTGGTCCTTGATTTCATAGAGCTTTGTATTGTCT TTAAGCATTCTTCCTTCGTTCACTAGAATTGTTAAAAACTTCGAATCAAT GCGTAGTTCAGATtgtacttttgttttcatctcTCCTATTGTAAGAGATT CTGATATTTCAGTCAATGCTATCGTTCGGTCATAATATTTCAGTTTGATA TCAACCAACGGTGGTTTCAGTACGACAGTTAAGGTTATAGTTTTATTCCA ATCTTTAACCATAGATGGAATATCCATCAAGTAGGTATCATTCGGTATTA TCTGATTTCCACACATACATAACTGATGTCCAATAGGTATTCCTTTAGAA TGACCAAAATAAGTTTTCAAGCTTCGAATTGTTGTGAGTTTTAATTCATT TAGCTGATTACTTTCGAATATTACCGTCTGagtcaaaaagtttaaagtga gATCAAACTTAAATGTGTCATACTTCTCTAGAAAGTCATCAATCTTCCAA TCTTCAGAAATGCCGGTGACATTAAGTATTAGTTCAacaatgttttgatt atttgtTCCGCGGATTTCATCCAATGTATCATTGATGTAAAGATTCGATA GTGTTTCTTCGTCTGATAAATTCCTTTCACGTGAGTGATGGAGTTGTTGG CAATCTATTGGTAAGTCGTATTGAGTCCTTAGATGCTCTTTGATGTCTCT TATATTGTTGAacaaattgattgaaaatacATTCTCCAATAAGAATCCTC GACTTGTTCTTATTCGAATTGGATATAAAACCGGTAGGATGCACCCATCG TTGATATTCTTAACAGCTATGGCAACTTTGATGTTTAAGAAGCGTTTGAC AAACAATGGTGATTCTAAATAAGGTTCTTTGAGGTATTGGTGAACTGCAT TGTTGTGGAGGAAAACAACGATAGAGGTTCTAGGGATGTCGATGTCTGGA GATTGGAAATCTCGTATAGATGTGATGAAATGATAAGCTTGTGCGAGGAT CTCATCTCTGGTTGTGTTTTGGTTGATTATTATAAATCCATGGTGAAGTT CATCTATGG

Coding sequence (CDS) from alignment at scaffold_20:239927..241185

>TCONS_00051270 ID=TCONS_00051270|Name=TCONS_00051270|organism=Clytia hemisphaerica|type=CDS|length=1257bp|location=Sequence derived from alignment at scaffold_20:239927..241185 (Clytia hemisphaerica)
AAAAGCGATTGTCAACTTTTCTAAGTCCGTAAGTAATGTgtcttttgata
ttattttgcTACGTACACGAAGTTTCATATTTTGATGTGATTCTAGATCT
CTGCGAAGAAAATCAACAGTATTGGAGATAAATTTGATTCTATGATAGTG
CTTTTCTACGCTATCCTTTTTCTTATGTAAATACACCAGTATTGACACTT
TGAGTTCGAATCCTGATTGGTCCTTGATTTCATAGAGCTTTGTATTGTCT
TTAAGCATTCTTCCTTCGTTCACTAGAATTGTTAAAAACTTCGAATCAAT
GCGTAGTTCAGATtgtacttttgttttcatctcTCCTATTGTAAGAGATT
CTGATATTTCAGTCAATGCTATCGTTCGGTCATAATATTTCAGTTTGATA
TCAACCAACGGTGGTTTCAGTACGACAGTTAAGGTTATAGTTTTATTCCA
ATCTTTAACCATAGATGGAATATCCATCAAGTAGGTATCATTCGGTATTA
TCTGATTTCCACACATACATAACTGATGTCCAATAGGTATTCCTTTAGAA
TGACCAAAATAAGTTTTCAAGCTTCGAATTGTTGTGAGTTTTAATTCATT
TAGCTGATTACTTTCGAATATTACCGTCTGagtcaaaaagtttaaagtga
gATCAAACTTAAATGTGTCATACTTCTCTAGAAAGTCATCAATCTTCCAA
TCTTCAGAAATGCCGGTGACATTAAGTATTAGTTCAacaatgttttgatt
atttgtTCCGCGGATTTCATCCAATGTATCATTGATGTAAAGATTCGATA
GTGTTTCTTCGTCTGATAAATTCCTTTCACGTGAGTGATGGAGTTGTTGG
CAATCTATTGGTAAGTCGTATTGAGTCCTTAGATGCTCTTTGATGTCTCT
TATATTGTTGAacaaattgattgaaaatacATTCTCCAATAAGAATCCTC
GACTTGTTCTTATTCGAATTGGATATAAAACCGGTAGGATGCACCCATCG
TTGATATTCTTAACAGCTATGGCAACTTTGATGTTTAAGAAGCGTTTGAC
AAACAATGGTGATTCTAAATAAGGTTCTTTGAGGTATTGGTGAACTGCAT
TGTTGTGGAGGAAAACAACGATAGAGGTTCTAGGGATGTCGATGTCTGGA
GATTGGAAATCTCGTATAGATGTGATGAAATGATAAGCTTGTGCGAGGAT
CTCATCTCTGGTTGTGTTTTGGTTGATTATTATAAATCCATGGTGAAGTT
CATCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032497XLOC_032497Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051270-exon-scaffold_20-1491911889:239927..241185TCONS_00051270-exon-scaffold_20-1491911889:239927..241185Clytia hemisphaericaexon
TCONS_00051270-exon-scaffold_20-1510915933:239927..241185TCONS_00051270-exon-scaffold_20-1510915933:239927..241185Clytia hemisphaericaexon
TCONS_00051270-exon-scaffold_20-1575043694:239927..241185TCONS_00051270-exon-scaffold_20-1575043694:239927..241185Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051270-proteinTCONS_00051270-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:239927..241185 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.168942 0.0658979 0.0765137 0.0374284 0.136696 0.144026 0.173761 0.0813364 0.256255 0.105804 0.0342321 0.180023 0.314602 0.326717 0.0767445 0.535331 0.202918 0.441967 0.79019 0.413439 0.620701 0.860465 0.813562 0.56354 0.253939 0.453269 1.15826 0.791123 0.412526 0.458508
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000626Ubiquitin_dom
IPR029071Ubiquitin-rel_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051270 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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