TCONS_00051273 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051273
Unique NameTCONS_00051273
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length510

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051273 ID=TCONS_00051273|Name=TCONS_00051273|organism=Clytia hemisphaerica|type=transcript|length=510bp
ATTATCCAGCAATATGCCATTATCATTGGATTAATAGTATCAGTCGTTCT
CCTGACTTTGGTTGCATTAAGCAAAGAATACCCTGTTGTTGTTTCTCAAA
GGGATCCTCAAAGGCTACTCAAATACATGATCTGCCGAAACCAACTTCCT
AAAATCTTTCAGTTTGGTTTTTCCGGGCTCTTACAAATAGCCACTTTCAT
CATAGCATACAGAGGACGAAATTTGCCGGACATTTTCAACGAGTCCATGT
CTTTATTGTATGCTTCTTTTGCGTCAACCATGTTCTTTTTTGTCATGTAT
ATTGTCTTGCTTTTTGGCGGAAAAGAAGATGTCTTTTTGCCGGCAACGAT
CATATGGTTAGCTATTTCGTTGAATTCGAATATTTACATTTTGTTGTGTT
ATGGGAAAAAGATATACATTATTCTGTTCAAGAAAGAACAAAACACCAGA
AGCTACATACAAAAGAGAACTTTTGAGTTCAAATGATATTTCTAAATTCA
CTCACTTGGT
Run BLAST on NCBI

protein sequence of TCONS_00051273-protein

>TCONS_00051273-protein ID=TCONS_00051273-protein|Name=TCONS_00051273-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
IIQQYAIIIGLIVSVVLLTLVALSKEYPVVVSQRDPQRLLKYMICRNQLP
KIFQFGFSGLLQIATFIIAYRGRNLPDIFNESMSLLYASFASTMFFFVMY
IVLLFGGKEDVFLPATIIWLAISLNSNIYILLCYGKKIYIILFKKEQNTR
SYIQKRTFEFK
Run BLAST on NCBI

transcript from alignment at scaffold_20:338679..339188

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051273 ID=TCONS_00051273|Name=TCONS_00051273|organism=Clytia hemisphaerica|type=transcript|length=510bp|location=Sequence derived from alignment at scaffold_20:338679..339188 (Clytia hemisphaerica)
ACCAAGTGAGTGAATTTAGAAATATCATTTGAACTCAAAAGTTCTCTTTT
GTATGTAGCTTCTGGTGTTTTGTTCTTTCTTGAACAGAATAATGTATATC
TTTTTCCCATAACACAACAAAATGTAAATATTCGAATTCAACGAAATAGC
TAACCATATGATCGTTGCCGGCAAAAAGACATCTTCTTTTCCGCCAAAAA
GCAAGACAATATACATGACAAAAAAGAACATGGTTGACGCAAAAGAAGCA
TACAATAAAGACATGGACTCGTTGAAAATGTCCGGCAAATTTCGTCCTCT
GTATGCTATGATGAAAGTGGCTATTTGTAAGAGCCCGGAAAAACCAAACT
GAAAGATTTTAGGAAGTTGGTTTCGGCAGATCATGTATTTGAGTAGCCTT
TGAGGATCCCTTTGAGAAACAACAACAGGGTATTCTTTGCTTAATGCAAC
CAAAGTCAGGAGAACGACTGATACTATTAATCCAATGATAATGGCATATT
GCTGGATAAT

Coding sequence (CDS) from alignment at scaffold_20:338679..339188

>TCONS_00051273 ID=TCONS_00051273|Name=TCONS_00051273|organism=Clytia hemisphaerica|type=CDS|length=486bp|location=Sequence derived from alignment at scaffold_20:338679..339188 (Clytia hemisphaerica)
TCATTTGAACTCAAAAGTTCTCTTTTGTATGTAGCTTCTGGTGTTTTGTT
CTTTCTTGAACAGAATAATGTATATCTTTTTCCCATAACACAACAAAATG
TAAATATTCGAATTCAACGAAATAGCTAACCATATGATCGTTGCCGGCAA
AAAGACATCTTCTTTTCCGCCAAAAAGCAAGACAATATACATGACAAAAA
AGAACATGGTTGACGCAAAAGAAGCATACAATAAAGACATGGACTCGTTG
AAAATGTCCGGCAAATTTCGTCCTCTGTATGCTATGATGAAAGTGGCTAT
TTGTAAGAGCCCGGAAAAACCAAACTGAAAGATTTTAGGAAGTTGGTTTC
GGCAGATCATGTATTTGAGTAGCCTTTGAGGATCCCTTTGAGAAACAACA
ACAGGGTATTCTTTGCTTAATGCAACCAAAGTCAGGAGAACGACTGATAC
TATTAATCCAATGATAATGGCATATTGCTGGATAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032500XLOC_032500Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051273-exon-scaffold_20-1491911889:338679..339188TCONS_00051273-exon-scaffold_20-1491911889:338679..339188Clytia hemisphaericaexon
TCONS_00051273-exon-scaffold_20-1510915933:338679..339188TCONS_00051273-exon-scaffold_20-1510915933:338679..339188Clytia hemisphaericaexon
TCONS_00051273-exon-scaffold_20-1575043694:338679..339188TCONS_00051273-exon-scaffold_20-1575043694:338679..339188Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051273-proteinTCONS_00051273-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:338679..339188 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.471465	0.229876	0.667271	0.783385	0	0.125604	0.151536	0.141866	0.0993236	0	0.119414	0.235495	0.0783891	0.244224	0.133857	0.215473	0.353927	0.272073	0.751767	2.49112	0.11396	0.166757	0.270286	0.491459	0.126548	0.225882	0.646472	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017978GPCR_3_C
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051273 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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