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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051274 ID=TCONS_00051274|Name=TCONS_00051274|organism=Clytia hemisphaerica|type=transcript|length=1272bp
GATCCTTTAGATGTTGAAGTTCATATTTTATTGATACATATCAAAGTTTT
GAACTGGCAACGTATAGGTTTGATCTTAATCACTGGAGACAATGGAATAA
ACCAGCAGTATTACAACGAAATGCACAACAGGTTCATCAACAAACTGTCA
GCTCAACATAACCACCTTTGTTATTTTAAAGATACAGTAGATTTAAATAA
TTCAACCAGTGTGGAAAGGATTGTTTCGAAGTTACATTCAGAATTCCAAa
ctaatgttttgattttgtttggcGTTCCCAAAGACCAAATACAGCTCATC
AAAAAGACGAATGTTGATTTCCATACCAAGCATGTATGGTTTACTCACGG
TTCTAGCGATCTTCTTTTAATAAAACATTTACCAGACCATTACAACGATC
TCTTCGTCATCACTTTCGTAACAAAACTAAGGAGAGAAATCTTGAACAAC
AAAGATGAATTCGCACTCTTGATAAAAccacaatttcaaaattcttttgt
tgaaaacgGGACTAGAGCTGAGTTGACTTTTGCATTAACCAAGTACATTT
TATGGCGGTTTGACAGAATGTTTGGTCAAAATTCTCGTTATACCCGATCC
AAAATATATGCTGAGATTAATATAGCACTCATAACAATTCAAGTTGTTTT
ACTCCGTCAAGATGGAGGTGTAGAAAGGTTTCAACACTATTCAAAACAAA
TGCATTTTTCGGAAGACAAGTATAAAACTTATCAACACAGCCGGATACAT
GGGACACTCTGCCATAAACACTCTTGTAGTCCAGGCTGGGAACATGCTCG
TGGAAAACTCTTATCAAGCCTTACAAAATGGAGCAATGAGTTTGGTCATA
CTTGCCAGAAATGTCAAAAAGGCTTCATAAAAGAAACCTACGGTTACGAG
TTTTGCCATAAATGTCCTAACTATTACCAAACGAATTTGGACCATACGAA
ATGTTTTGACCCTTACATAGATCAGTTCTATACGACAAATCGTGTGTATT
ACGCGACAATCTGCTTCGCCTCCATCGGTGTAACCCTCGATCTCTTCATT
CTTGTTGTATTCATCATCTATAGAGACACACCGATTGCTAAAAGCTCTGA
TTTCATTCTGACCGTCATACACTTGATAACCTCGCTATTCATAAATACTG
GAATTTTATTCGTGAGACATTTCAAACCAAACCCTGTATTGTGTAACATC
GATGCCACGACTTTTGGATTATTCTACACTCTCTTCATTGCTATAGTGTT
AACCAAGTCCCATAAAATCTTG Run BLAST on NCBI protein sequence of TCONS_00051274-protein >TCONS_00051274-protein ID=TCONS_00051274-protein|Name=TCONS_00051274-protein|organism=Clytia hemisphaerica|type=polypeptide|length=424bp
DPLDVEVHILLIHIKVLNWQRIGLILITGDNGINQQYYNEMHNRFINKLS
AQHNHLCYFKDTVDLNNSTSVERIVSKLHSEFQTNVLILFGVPKDQIQLI
KKTNVDFHTKHVWFTHGSSDLLLIKHLPDHYNDLFVITFVTKLRREILNN
KDEFALLIKPQFQNSFVENGTRAELTFALTKYILWRFDRMFGQNSRYTRS
KIYAEINIALITIQVVLLRQDGGVERFQHYSKQMHFSEDKYKTYQHSRIH
GTLCHKHSCSPGWEHARGKLLSSLTKWSNEFGHTCQKCQKGFIKETYGYE
FCHKCPNYYQTNLDHTKCFDPYIDQFYTTNRVYYATICFASIGVTLDLFI
LVVFIIYRDTPIAKSSDFILTVIHLITSLFINTGILFVRHFKPNPVLCNI
DATTFGLFYTLFIAIVLTKSHKIL Run BLAST on NCBI transcript from alignment at scaffold_20:343303..344574 Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051274 ID=TCONS_00051274|Name=TCONS_00051274|organism=Clytia hemisphaerica|type=transcript|length=1272bp|location=Sequence derived from alignment at scaffold_20:343303..344574 (Clytia hemisphaerica)
CAAGATTTTATGGGACTTGGTTAACACTATAGCAATGAAGAGAGTGTAGA
ATAATCCAAAAGTCGTGGCATCGATGTTACACAATACAGGGTTTGGTTTG
AAATGTCTCACGAATAAAATTCCAGTATTTATGAATAGCGAGGTTATCAA
GTGTATGACGGTCAGAATGAAATCAGAGCTTTTAGCAATCGGTGTGTCTC
TATAGATGATGAATACAACAAGAATGAAGAGATCGAGGGTTACACCGATG
GAGGCGAAGCAGATTGTCGCGTAATACACACGATTTGTCGTATAGAACTG
ATCTATGTAAGGGTCAAAACATTTCGTATGGTCCAAATTCGTTTGGTAAT
AGTTAGGACATTTATGGCAAAACTCGTAACCGTAGGTTTCTTTTATGAAG
CCTTTTTGACATTTCTGGCAAGTATGACCAAACTCATTGCTCCATTTTGT
AAGGCTTGATAAGAGTTTTCCACGAGCATGTTCCCAGCCTGGACTACAAG
AGTGTTTATGGCAGAGTGTCCCATGTATCCGGCTGTGTTGATAAGTTTTA
TACTTGTCTTCCGAAAAATGCATTTGTTTTGAATAGTGTTGAAACCTTTC
TACACCTCCATCTTGACGGAGTAAAACAACTTGAATTGTTATGAGTGCTA
TATTAATCTCAGCATATATTTTGGATCGGGTATAACGAGAATTTTGACCA
AACATTCTGTCAAACCGCCATAAAATGTACTTGGTTAATGCAAAAGTCAA
CTCAGCTCTAGTCCcgttttcaacaaaagaattttgaaattgtggTTTTA
TCAAGAGTGCGAATTCATCTTTGTTGTTCAAGATTTCTCTCCTTAGTTTT
GTTACGAAAGTGATGACGAAGAGATCGTTGTAATGGTCTGGTAAATGTTT
TATTAAAAGAAGATCGCTAGAACCGTGAGTAAACCATACATGCTTGGTAT
GGAAATCAACATTCGTCTTTTTGATGAGCTGTATTTGGTCTTTGGGAACg
ccaaacaaaatcaaaacattagtTTGGAATTCTGAATGTAACTTCGAAAC
AATCCTTTCCACACTGGTTGAATTATTTAAATCTACTGTATCTTTAAAAT
AACAAAGGTGGTTATGTTGAGCTGACAGTTTGTTGATGAACCTGTTGTGC
ATTTCGTTGTAATACTGCTGGTTTATTCCATTGTCTCCAGTGATTAAGAT
CAAACCTATACGTTGCCAGTTCAAAACTTTGATATGTATCAATAAAATAT
GAACTTCAACATCTAAAGGATC Coding sequence (CDS) from alignment at scaffold_20:343303..344574 >TCONS_00051274 ID=TCONS_00051274|Name=TCONS_00051274|organism=Clytia hemisphaerica|type=CDS|length=1272bp|location=Sequence derived from alignment at scaffold_20:343303..344574 (Clytia hemisphaerica)
CAAGATTTTATGGGACTTGGTTAACACTATAGCAATGAAGAGAGTGTAGA
ATAATCCAAAAGTCGTGGCATCGATGTTACACAATACAGGGTTTGGTTTG
AAATGTCTCACGAATAAAATTCCAGTATTTATGAATAGCGAGGTTATCAA
GTGTATGACGGTCAGAATGAAATCAGAGCTTTTAGCAATCGGTGTGTCTC
TATAGATGATGAATACAACAAGAATGAAGAGATCGAGGGTTACACCGATG
GAGGCGAAGCAGATTGTCGCGTAATACACACGATTTGTCGTATAGAACTG
ATCTATGTAAGGGTCAAAACATTTCGTATGGTCCAAATTCGTTTGGTAAT
AGTTAGGACATTTATGGCAAAACTCGTAACCGTAGGTTTCTTTTATGAAG
CCTTTTTGACATTTCTGGCAAGTATGACCAAACTCATTGCTCCATTTTGT
AAGGCTTGATAAGAGTTTTCCACGAGCATGTTCCCAGCCTGGACTACAAG
AGTGTTTATGGCAGAGTGTCCCATGTATCCGGCTGTGTTGATAAGTTTTA
TACTTGTCTTCCGAAAAATGCATTTGTTTTGAATAGTGTTGAAACCTTTC
TACACCTCCATCTTGACGGAGTAAAACAACTTGAATTGTTATGAGTGCTA
TATTAATCTCAGCATATATTTTGGATCGGGTATAACGAGAATTTTGACCA
AACATTCTGTCAAACCGCCATAAAATGTACTTGGTTAATGCAAAAGTCAA
CTCAGCTCTAGTCCcgttttcaacaaaagaattttgaaattgtggTTTTA
TCAAGAGTGCGAATTCATCTTTGTTGTTCAAGATTTCTCTCCTTAGTTTT
GTTACGAAAGTGATGACGAAGAGATCGTTGTAATGGTCTGGTAAATGTTT
TATTAAAAGAAGATCGCTAGAACCGTGAGTAAACCATACATGCTTGGTAT
GGAAATCAACATTCGTCTTTTTGATGAGCTGTATTTGGTCTTTGGGAACg
ccaaacaaaatcaaaacattagtTTGGAATTCTGAATGTAACTTCGAAAC
AATCCTTTCCACACTGGTTGAATTATTTAAATCTACTGTATCTTTAAAAT
AACAAAGGTGGTTATGTTGAGCTGACAGTTTGTTGATGAACCTGTTGTGC
ATTTCGTTGTAATACTGCTGGTTTATTCCATTGTCTCCAGTGATTAAGAT
CAAACCTATACGTTGCCAGTTCAAAACTTTGATATGTATCAATAAAATAT
GAACTTCAACATCTAAAGGATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051274-exon-scaffold_20-1491911889:343303..344574 | TCONS_00051274-exon-scaffold_20-1491911889:343303..344574 | Clytia hemisphaerica | exon |
| TCONS_00051274-exon-scaffold_20-1510915933:343303..344574 | TCONS_00051274-exon-scaffold_20-1510915933:343303..344574 | Clytia hemisphaerica | exon |
| TCONS_00051274-exon-scaffold_20-1575043694:343303..344574 | TCONS_00051274-exon-scaffold_20-1575043694:343303..344574 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_20 | supercontig | scaffold_20:343303..344574 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017978 | GPCR_3_C |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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