TCONS_00051277 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051277
Unique NameTCONS_00051277
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length660

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051277 ID=TCONS_00051277|Name=TCONS_00051277|organism=Clytia hemisphaerica|type=transcript|length=660bp
tttttatttgagcCTTGGCTTAATTGTGGTCCTTTTAAATATAACGGAGA
TCATTTTCATCGTCAAAGATATGAAGAAGAAACTTCACATATCACAATAT
TATCTCCTTAATCTTGCTACCTCAGACACCATATTCGGAATAGCAATAAC
CGTCTTTGCAGCAGTTACAATGCATCTTAATGTTGTTAATGACATAACAA
ACAAAGAAGCTCCAATCGTCCGCTTACAGCTTCTGAGTTTGGTTATTGGG
TTTCGAATCACCCTCCTTATGTCAATTTTCAGCTTGCTGGCATTGACAGT
TGATCGAGTTCTGGTAATGGTCTTCCCATTTAAACATCGTtgcataaaaa
agaaacatgCTGTTTTCGCCTGTCTCGCAATGTGGGTAGTTTCGATAGCT
CTTTTCACTTTTAATTCGATTCTCTTGAATCAAGATCGCCCTTACGCGAA
AATAATTCGGTTGCTTGGCACAGTGCATGATCCTAATATCACAAGTCAGT
GGGACTTATCGAAGCTCAACTTGAGAGTTGTTAAACAAGAGAATGACATT
TATGTTGACAGAGTCAAGGTTCTGTTAAGGacagaaaaaataacaaatat
taccaaatatataaaaattttcggaaaCAAAACGGACTGGTCAGAGGTGG
AAGATATAAC
Run BLAST on NCBI

protein sequence of TCONS_00051277-protein

>TCONS_00051277-protein ID=TCONS_00051277-protein|Name=TCONS_00051277-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
FYLSLGLIVVLLNITEIIFIVKDMKKKLHISQYYLLNLATSDTIFGIAIT
VFAAVTMHLNVVNDITNKEAPIVRLQLLSLVIGFRITLLMSIFSLLALTV
DRVLVMVFPFKHRCIKKKHAVFACLAMWVVSIALFTFNSILLNQDRPYAK
IIRLLGTVHDPNITSQWDLSKLNLRVVKQENDIYVDRVKVLLRTEKITNI
TKYIKIFGNKTDWSEVEDI
Run BLAST on NCBI

transcript from alignment at scaffold_20:377175..377834

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051277 ID=TCONS_00051277|Name=TCONS_00051277|organism=Clytia hemisphaerica|type=transcript|length=660bp|location=Sequence derived from alignment at scaffold_20:377175..377834 (Clytia hemisphaerica)
GTTATATCTTCCACCTCTGACCAGTCCGTTTTGtttccgaaaatttttat
atatttggtaatatttgttattttttctgtCCTTAACAGAACCTTGACTC
TGTCAACATAAATGTCATTCTCTTGTTTAACAACTCTCAAGTTGAGCTTC
GATAAGTCCCACTGACTTGTGATATTAGGATCATGCACTGTGCCAAGCAA
CCGAATTATTTTCGCGTAAGGGCGATCTTGATTCAAGAGAATCGAATTAA
AAGTGAAAAGAGCTATCGAAACTACCCACATTGCGAGACAGGCGAAAACA
GcatgtttcttttttatgcaACGATGTTTAAATGGGAAGACCATTACCAG
AACTCGATCAACTGTCAATGCCAGCAAGCTGAAAATTGACATAAGGAGGG
TGATTCGAAACCCAATAACCAAACTCAGAAGCTGTAAGCGGACGATTGGA
GCTTCTTTGTTTGTTATGTCATTAACAACATTAAGATGCATTGTAACTGC
TGCAAAGACGGTTATTGCTATTCCGAATATGGTGTCTGAGGTAGCAAGAT
TAAGGAGATAATATTGTGATATGTGAAGTTTCTTCTTCATATCTTTGACG
ATGAAAATGATCTCCGTTATATTTAAAAGGACCACAATTAAGCCAAGgct
caaataaaaa

Coding sequence (CDS) from alignment at scaffold_20:377175..377834

>TCONS_00051277 ID=TCONS_00051277|Name=TCONS_00051277|organism=Clytia hemisphaerica|type=CDS|length=657bp|location=Sequence derived from alignment at scaffold_20:377175..377834 (Clytia hemisphaerica)
TATATCTTCCACCTCTGACCAGTCCGTTTTGtttccgaaaatttttatat
atttggtaatatttgttattttttctgtCCTTAACAGAACCTTGACTCTG
TCAACATAAATGTCATTCTCTTGTTTAACAACTCTCAAGTTGAGCTTCGA
TAAGTCCCACTGACTTGTGATATTAGGATCATGCACTGTGCCAAGCAACC
GAATTATTTTCGCGTAAGGGCGATCTTGATTCAAGAGAATCGAATTAAAA
GTGAAAAGAGCTATCGAAACTACCCACATTGCGAGACAGGCGAAAACAGc
atgtttcttttttatgcaACGATGTTTAAATGGGAAGACCATTACCAGAA
CTCGATCAACTGTCAATGCCAGCAAGCTGAAAATTGACATAAGGAGGGTG
ATTCGAAACCCAATAACCAAACTCAGAAGCTGTAAGCGGACGATTGGAGC
TTCTTTGTTTGTTATGTCATTAACAACATTAAGATGCATTGTAACTGCTG
CAAAGACGGTTATTGCTATTCCGAATATGGTGTCTGAGGTAGCAAGATTA
AGGAGATAATATTGTGATATGTGAAGTTTCTTCTTCATATCTTTGACGAT
GAAAATGATCTCCGTTATATTTAAAAGGACCACAATTAAGCCAAGgctca
aataaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032504XLOC_032504Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051277-proteinTCONS_00051277-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051277-exon-scaffold_20-1491911889:377175..377834TCONS_00051277-exon-scaffold_20-1491911889:377175..377834Clytia hemisphaericaexon
TCONS_00051277-exon-scaffold_20-1510915933:377175..377834TCONS_00051277-exon-scaffold_20-1510915933:377175..377834Clytia hemisphaericaexon
TCONS_00051277-exon-scaffold_20-1575043694:377175..377834TCONS_00051277-exon-scaffold_20-1575043694:377175..377834Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:377175..377834 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0786646	0	0.0890681	0	0	0.251486	0	0.0946821	0.198867	0	0	0.275681	0.523645	0.4017	0.621377	0.808566	0.275869	0.335891	0	0.973733	0.172431	0.48001	0	0.092119	0	0.0753774	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051277 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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