TCONS_00051281 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051281
Unique NameTCONS_00051281
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1282

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051281 ID=TCONS_00051281|Name=TCONS_00051281|organism=Clytia hemisphaerica|type=transcript|length=1282bp
GTTTTAATGATGCTCCCAAACTTTCAAAGGCATAACGCAATCAATGATCT
TTGAATGATCAGATGATACGCTTCAACCCATCTTAGTTTCCGAATCTTCC
ACCATTTCCATACGACTTATAGTTATAGGAAAACACAGAATGAACGGTCG
TGTGTTGTTAACGTTGGCCCTTTGCGGTCTTATCCTTTTCGTCCAATTGG
ACGCAAAAGCCATCAAGCACAAGAAACACAAGAAAACACACATCAAACAC
AAAAAAGCGGCCCTCCCACAAGACCCACCAGCACCTGAAGGAGATGCCCC
AGCCCCAGATGATGCCGCCGCCCCACCAGCCGGAGATGCTCCACCAGCAG
GAGGCGCCCCACCAGCAGCCGGTGCTGATGATGAAGATGATGCTGCTGCT
CCACCCGCAGCTGCCCCAAAACCAGGTGCAGGAGGTGCTCCACAACAACC
AGGACAACAACCAGGACAACCTCCAATCAACCCAAATGATTTGGACGGTA
ACGGTGTTGCTGACAATCTTGAGCAACCACAACAACCTCTCCCAGGACAA
CCACCAGCACCTGGTGCACCTCCACCagctgaagaagaagaagaaggcaG
TGCCAGTGGAATGGCCCCACCTCCTCCACCTCCACCTAAACCAGCACCAA
AACCTGTCTGCGATGAATGTCCACCAGCCGGTGCTCCACCACCATTAGAC
TGTATGCCTGCCCCAGCCTGTGCCCCAGTTGCTGACCCATGTATGCCAGC
ACCGGGATGTGCCCCAATGGCCCCACCAATGGGATGCATGGGAGCCGCTT
GTGCCCCACAAATGCCCGCCGGATGCGCCCCAATGCCAGCCGGATGTGCC
CCACCAATGCCAGCCATGCCCGCTATGCCCGCCCCATGTGCCCCACAACC
AGGATGTGCCCCAATGGCTCCACCAGTTGGATGTCAAGGTGCCGCCTGTG
CCCCACAAATGCCCGCCGGATGTGCCCCAATGGCAGCCGGATGTGCCCCA
CCAATGCCCATGCCAATGTCCCCCTGTGGAATGTGTAAGAAACACTGCAC
AAAAGCATGTCAAGCCAAGAAATGCTGCAAAAAATCCGCAAAGACCAAGA
AGGCTAAGAAACATCATTAAATTCTCACTCGCTTATCTATGATGCCAACT
TCAACCAAACACAATGTGGAATGTCAACCTTTTTTTACCATGATATAGAG
TTTTAaacaatataattatttttttgttaaaagtaaatattttttttctg
caagaaagttgatttgaattttaatacatatg
Run BLAST on NCBI

transcript from alignment at scaffold_200:86198..92476+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051281 ID=TCONS_00051281|Name=TCONS_00051281|organism=Clytia hemisphaerica|type=transcript|length=6279bp|location=Sequence derived from alignment at scaffold_200:86198..92476+ (Clytia hemisphaerica)
GTTTTAATGATGCTCCCAAACTTTCAAAGGTAAAAAAAGCTTTTGCATTA
TTGTATTGTTCATGGTTGAATACCCATTGTTTAATTCTTATCCTGTTCAA
AATCCACTAACGGATCAAGAATTGagtgtttgttttttataaatcgTTTC
AAAATGGTGATAAATTTGTTTGTCTGTTTGTTTAAGTTTAATCGTCTGTT
TATTCCTAAAGTGTGTTTGTTGTTTTATTTGTTAATAATGCCCAATAGGT
GTTGAGTTTTAGCTTTCTTGGATCTATCTCCCATTGTTTCACCTGGAGGG
TTGCTGTTATTGAAGGTGATTTTCTCAGAAGTTTTTAAACAAAGGAGTCC
GCTACAAGCTAGTATTTGCTTCTTTGATTCCTCAGCTTGACTGTGTGGGT
AAGTTTTGCTTTATCTCTGCATGCAAGTTGGTCGTTTTTCGTTCGAAAAT
CATTCAAGCGTTACAAGGAAAAACATTGGAAACAATAATCAGCCATGCGT
AACATATCAAACAATGGAAATGATCTTCAATAAACTATTCAGGGGGTATT
GTTTCTATCCATTTACACTTTATAATACACCAACGTAACCCCctgattgt
ttttgtttgtttattaaTTTAGGCATAACGCAATCAATGATCTTTGAATG
ATCAGATGATACGCTTCAACCCATCTTAGTTTCCGAATCTTCCACCATTT
CCATACGACTTATAGTTATAGGAAAACACAGAGTGagtattttaaatatt
tctcgaaatcttttgtgatatttttgttattttctggCATTTCTTTGTGT
TATTTGGTTTGAATATTGTAAGTGTATTTGGCGAAAAAGCATATCCAATG
AATGTAGAATACACTGGacagtttaaagtttataaaacttgctttttgtt
tgaaattgtcTGATTGCAACCAAGAATATGAAAAAGTTTCAGCCAGAATT
ACCAGAAAACTatctaaatttattttgtgtttGGCAAATATTTTATGGAG
GTGAAATTTAAAATGGTCTTGTTCTATTCTCCTACTTCCCAAGAGCaatg
aaattttgatattcttggTTTTGCAAGCATCATCGTTAACCCTCTATTAC
TTGTTAAGATCCTAGTATCTTATTTTAATGTCTTCTTCGTTTATCTCTAG
ATGAACGGTCGTGTGTTGTTAACGTTGGCCCTTTGCGGTCTTATCCTTTT
CGTCCAATTGGACGCAAAAGCCATCAAGCACAAGAAACACAAGAAAACAC
ACATCAAACACAAAAAAGCGGGTAAGTTTCATTGCCATCTATCTCAAATA
GCACTTTTAAAATCTGATATCACTAGTCTGAGTGGATTGCTTTTTGTCAA
TGCTCTAAATACCCTTTTTCGCTTATTAGGGCTCAGTTTTCTAATTTATG
TATTTTCTATTAACAGCCCTCCCACAAGACCCACCAGCACCTGAAGGAGA
TGCCCCAGCCCCAGATGATGCCGCCGCCCCACCAGCCGGAGATGCTCCAC
CAGCAGGAGGCGCCCCACCAGCAGCCGGTGCTGATGATGAAGATGATGCT
GCTGCTCCACCCGCAGCTGCCCCAAAACCAGGTGCAGGAGGTGCTCCACA
ACAACCAGGACAACAACCAGGACAACCTCCAATCAACCCAAATGATTTGG
ACGGTAACGGTGTTGCTGACAATCTTGAGCAACCACAACAACCTCTCCCA
GGACAACCACCAGCACCTGGTGCACCTCCACCagctgaagaagaagaaga
aggcaGTGCCAGTGGTAAGTCTCCCTTAAATTATCATCATCACCTTTATT
GAAGTTGACTATCATTAGTGGGATCTTTTACGTCTCTTTGTGGGAGATTT
GAAGTCAGAGCGATAAAGTTGGTCagcaaataaatcaaaattcgGAAGCT
TCGCGTAATACAAGTTAAACATTTCAAGTGCACATTTTCCACCTCGCTAA
AGTTTGTACTCACCTCTACGGCCCATAAGGCTTGAATCAGTGTGCTGGCT
AACATTTGCTCTGACTTCTCATCTCGTCGATAATCTATTATGATTAAAAT
TATCATGCATGAGGGTATAGATAAAGCACGGTTCTTTATTCTTATTATCA
TTTTCTTAAAACACGTAGTAATTAAATCTAACTTGAAGGTTAAGCCATGC
AGGTTGAGCCATGAAGGTTGTAGAACTAGTTTAAGGATAGTAGAGTTTTT
CCTAGTCCTCTGAAATGCCCTATCGTCTGGTATTCTTTGGATTAAAGTTG
GTTCAAGCCAGAATAAATAAAAAGTCAAGGGTAATTTTAGAGGACTGGGG
ATAATTCATGCACATCATCTTTCATGATTATTTCTGTAAGTGTCtaattt
atttctttaaaaaagtaaaTGCAGTGAAACCAAAAGAAAACGTAAAATTT
AATACAAGATTATTGATTCTCAATCTGTCTCAATACAAGTAGAAAATGAA
TTTATCGGGTTAGAATATTTCAGAGTGGgtaaacctttttaaaattttca
gtggTTTTCATTGCATTTACCTAAAGAAATTCGAATTCACAAAACTTGAA
TAAAAGTTAAGCATAGCAAAGTGTAGAAAATTAAGTTGAAAAGATTCCCT
TTGAAAAACcttgtgaaatttttaaaaactcaataaaacaataatacaat
gtatagcaatgtgccctcccggttattaccggGAACAATAATAAACAAAC
TTTGAAAGCTTgaaactacaatcatggacaaaatatgaGACAAGGGGATT
TCtttgcgaaattttaaacaccacagatgatttttaagcgcgttaaatAA
CAGTTGGAAAGTACAGTTTTAACTGTGAGTTTTAACAAAAGACTctggat
ctcaggatttaaaagctcgaatttgctccaataaggcttggatTATAGAA
ACCATCGAACCACTCCAGAATCGAAAGAtacaatgaaagaaagtggaagt
gctaaaatagcaattctcgctNCAAACCAAGCCAGCGGATCGAAATATTC
AACGAAAGAAAgcggaagtgctaaaatagcaattctcgtcagaactttaa
attctgaaaaacgttaaaatacactaaaatctcaatatatttcgaccatg
attgtagtacgTAAGAGAAACGAGCAATatctaaaagaaattttcttttt
tgctgtAATAACATTTTTGCACGAACCAGACCAAAAAATGACTAGATTTC
TGATAGTATGTCGAGTTTAAAAAATGCATGTCTTTTTGCCCTTATCAGAT
GCTtaacttttattcttttttgttGATGTCCATATGAAAAGTGAATGGCT
AATATCGAAAATCGAAgttgtcttttttttattttcttaagtTCACTGTC
CCCACCATAATACCTATCGATGTGAGAATGTTTTTAGTTGTTATGCCATG
CGCGACACGAAATCGTCCCTTGAAATTAGTCATTTATTTTTCACCCTTAA
AGCACCCCTGTGATAAAGATTTAATGTTGTTTCCCTGGGTCATTTGGGGG
AATTAAAAACACCcgttttgaaaagataaaacCTCCTTAGTATCTTTCAC
TTTTGTTTCTAAAACTACTGAGACCATGACCAGTAAAATACATACATACA
CACAAACTGACTGACTGAATGAAACGGTCCTTCCTATATCTAGGCGCCGC
TCCACCACCCGCAAATCCAGTGGCCCCTTCATTACGTTTGTGCCCTGGTG
ATTGCGACCCACAATGTGCTCCAGCTTGCCATGACTTTTGTTGCAGTGGA
CATCCGGCCTTAAATAGATACAACGGACCACCTCCATGTGCCGAGCCCCC
ATGTATGCCTCCTATGCCACCCCCAATGCCAATGGCTGCACCCTGTGCCC
AACCCCCTTGCGCCCCTGCAATGCCAATGGCTGCACCTTGTGCCCAACCC
CCTTGCGCTCCACCAATGCCAATGGCTGCACCTTGTGCCCAACCCCCTTG
CGCCCCACCAATGCCAATGGCTGCACCTTGTGCCCAACCCCCTTGCGCCC
CACCGATGCCAATGGCTGCACCTTGTGCCCAACCACCATGCGCTCCAGCC
ATGCCTGCTGCTATGCCATGCGCCCAACCTCCTTGTATGCCAGCATCAGC
TCCTATGTGTCAACCACCCCCTAGTTGCATGCCAGCTGCCGCCCCTTCTG
TGTGTGCACCAGGTCTTGTTCGATGTATGCCTGCTCAACCAGCAGCAGGA
TGCAACCTCCCACCACAATGCCCTCAAGCCACCCCTATGCCACAGTGTCT
CCCTCCTGGTGCTTGTAGTGCTGAAGAGATCCCAACCCCAACAGAAAAAC
CTAAGCAAGAAAATTTGACCATGCATGAAATGATCATGAATATGCCACTA
CCATGTGCTCAACCTCCATGCATGCCTGCTGCTATGCCATGCGCCCAGCC
GCCTTGTATGCAAGCCCCTATGGCTGCACCCTGTGCCCAACCTCCCTGTG
CTGCTGCCCCTATGCCAATGTCTGCTGCTTGTGCCCAACCCCCATGTGCT
TCTGCTCCAATGCCAATGTCTGCTCCATGCGCCCAGCCTCCTTGTGCTCC
AGCCATGCAAATGGCTGCACCCTGCGCACGACCACCTTGTGCCCCTGCAA
TGCCTGCTGCTATGCCATGTGCCCAGCCTCCCTGTGCTGCTGCCCCAATG
CCAATGGCCGCCCCCTGCGCCCAACCACCTTGTGCCCCTGCAATGCCTGC
TGCTATGCCTTGTGCTCAGCCTCCATGTGCTCCACCCATGGCAGCCACCC
CAGCCTGCGCTAAACCACCCTGCATGGCTCAACCTTCATGTGCTTCTTGT
CGTCGCCATTGTGCTCCTCATTGTCCCAAAAGATGCTGTAAAAAATCCAC
CAAGAAAtctcacaaaaacaaacattgaatTCCTTAACATCCTTTGAACT
TAGTGTAGATAGACAGCCTTCCTCATTATGAGATCGACATTTTTAGGATT
TGATGAGCCTCCACCACaaacaccaccaccaccaccttCGAAATGTAACC
AGTGTGATCCTTCTGATAGTAGTTGCCAATCTGACCCATCTTGTGCCCAA
CAACAGGGTGCCATGTGCACCCCCCAACCTGGTTGTGCCCCTTCCTTCAC
TCCAGGGTGCCTTAACTGCATGCCACAATACCCATCAGGATGTGCTGCCT
TACCTCCAATGTGTTTCCCTCAAATGATGCCCCCTCCTCCCCCTCCTCCT
TGTCCTGCCCCTGGTTCCTGCACACCAGCAGAACTTGAAGCAAGCAAAAT
GCCGACTCCTCCTCCAGTCCCTGTGCAATTCCAAAGTCCAGATTCATTCC
TTGTCACATGTCCATTGCCGCCCTGCATGCAACAACAGATGCCTTGTGGT
CAAGCTGGAGCTGCCCCTTGTCCCGGAGCTAAGTCCCCTGCGTGTCCTTC
CGGTTGTGGAAGTACTTGTGGCCCAAAATGTCATCGGCGTTGCTGtaaaa
agcataaaaaatcaaccaagaAAACCTCAAAACACAAGCGGAAACAACAT
TAATTCTTTTTCTACCATTTTATAAAAACCCTCTAAAACACATAtaccaa
acaaacaaaaacattctcACAATcacatcaaaaaaactttttcttcattA
AATAGGAATGGCCCCACCTCCTCCACCTCCACCTAAACCAGCACCAAAAC
CTGTCTGCGATGAATGTCCACCAGCCGGTGCTCCACCACCATTAGACTGT
ATGCCTGCCCCAGCCTGTGCCCCAGTTGCTGACCCATGTATGCCAGCACC
GGGATGTGCCCCAATGGCCCCACCAATGGGATGCATGGGAGCCGCTTGTG
CCCCACAAATGCCCGCCGGATGCGCCCCAATGCCAGCCGGATGTGCCCCA
CCAATGCCAGCCATGCCCGCTATGCCCGCCCCATGTGCCCCACAACCAGG
ATGTGCCCCAATGGCTCCACCAGTTGGATGTCAAGGTGCCGCCTGTGCCC
CACAAATGCCCGCCGGATGTGCCCCAATGGCAGCCGGATGTGCCCCACCA
ATGCCCATGCCAATGTCCCCCTGTGGAATGTGTAAGAAACACTGCACAAA
AGCATGTCAAGCCAAGAAATGCTGCAAAAAATCCGCAAAGACCAAGAAGG
CTAAGAAACATCATTAAATTCTCACTCGCTTATCTATGATGCCAACTTCA
ACCAAACACAATGTGGAATGTCAACCTTTTTTTACCATGATATAGAGTTT
TAaacaatataattatttttttgttaaaagtaaatattttttttctgcaa
gaaagttgatttgaattttaatacatatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032507XLOC_032507Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051281-exon-scaffold_200-1491911889:86198..86226TCONS_00051281-exon-scaffold_200-1491911889:86198..86226Clytia hemisphaericaexon
TCONS_00051281-exon-scaffold_200-1510915933:86198..86226TCONS_00051281-exon-scaffold_200-1510915933:86198..86226Clytia hemisphaericaexon
TCONS_00051281-exon-scaffold_200-1575043694:86198..86226TCONS_00051281-exon-scaffold_200-1575043694:86198..86226Clytia hemisphaericaexon
TCONS_00051281-exon-scaffold_200-1491911889:86820..86929TCONS_00051281-exon-scaffold_200-1491911889:86820..86929Clytia hemisphaericaexon
TCONS_00051281-exon-scaffold_200-1510915933:86820..86929TCONS_00051281-exon-scaffold_200-1510915933:86820..86929Clytia hemisphaericaexon
TCONS_00051281-exon-scaffold_200-1575043694:86820..86929TCONS_00051281-exon-scaffold_200-1575043694:86820..86929Clytia hemisphaericaexon
TCONS_00051281-exon-scaffold_200-1491911889:87348..87468TCONS_00051281-exon-scaffold_200-1491911889:87348..87468Clytia hemisphaericaexon
TCONS_00051281-exon-scaffold_200-1510915933:87348..87468TCONS_00051281-exon-scaffold_200-1510915933:87348..87468Clytia hemisphaericaexon
TCONS_00051281-exon-scaffold_200-1575043694:87348..87468TCONS_00051281-exon-scaffold_200-1575043694:87348..87468Clytia hemisphaericaexon
TCONS_00051281-exon-scaffold_200-1491911889:87614..87961TCONS_00051281-exon-scaffold_200-1491911889:87614..87961Clytia hemisphaericaexon
TCONS_00051281-exon-scaffold_200-1510915933:87614..87961TCONS_00051281-exon-scaffold_200-1510915933:87614..87961Clytia hemisphaericaexon
TCONS_00051281-exon-scaffold_200-1575043694:87614..87961TCONS_00051281-exon-scaffold_200-1575043694:87614..87961Clytia hemisphaericaexon
TCONS_00051281-exon-scaffold_200-1491911889:91803..92476TCONS_00051281-exon-scaffold_200-1491911889:91803..92476Clytia hemisphaericaexon
TCONS_00051281-exon-scaffold_200-1510915933:91803..92476TCONS_00051281-exon-scaffold_200-1510915933:91803..92476Clytia hemisphaericaexon
TCONS_00051281-exon-scaffold_200-1575043694:91803..92476TCONS_00051281-exon-scaffold_200-1575043694:91803..92476Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_200supercontigscaffold_200:86198..92476 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.55352e-09	0	0	0	7.13578	17.435	344.359	407.707	121.594	166.114	386.592	219.958	500.849	479.063	461.19	1308.21	796.088	763.503	0	1.20802	550.966	632.787	495.782	479.669	575.656	646.327	101.792	30.2536	0	1.52571
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051281 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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