TCONS_00051292 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051292
Unique NameTCONS_00051292
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1577

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051292 ID=TCONS_00051292|Name=TCONS_00051292|organism=Clytia hemisphaerica|type=transcript|length=1577bp
GCCAAATTTTTTCATATCAAAAGGTTGACTCCTATATTCGTGATTGATCA
GAACTGacagaaaactttttgaaacgcGTTGCAGTCAAAGTATTCGTCGA
AAATGagaGAGTGTATTTCAGTTCACGTTGGACAAGCTGGTGTCCAAATC
GGAAACGCTTGTTGGGAATTGTACTGTTTGGAACATGGAATCCAACCTGA
TGGTGAAATGTCTTCAGACACAACCACCAATGACTCGCTTTCCACTTTCT
TCAGCGAGACGGGGACTGGCAAACGTGTCCCCAGAGCTGTCTTTGTTGAC
TTAGAACCTGCAGTCATTGatGAAGTGCGTTCCGGTACATACCGTTCACT
TTTTCATCCGGAACAATTGATCACCGGAAAAGAAGATGCCGCAAACAATT
ACGCTAGAGGACATTATACCGTCGGGAAGGAGTATATTGATCAAACATTG
GATCGAATCCGCAAATTATGCGATCTTTGCACCGGTCTTCAGGGGTTCTT
GATTTTTCATTCGTACGGAGGAGGAACTGGGTCCGGCTTCACATCCCTTC
TCATGGAACGTTTATCAGTGGAATATGGAAAGAAAGCTAAGCTAGAATTT
TCTATCTACCCTTCTCCAAAAGTTTCCACCGCTGTCGTTGAACCTTACAA
TGCTATTCTTACAACCCACACTACCTTGGAGCACTCAGATGTCGCTTTCA
TGGTTGATAATGAAGCTATCTACGATATTTGCAAACGTAATTTAAGTGTT
GATCGTCCATCATATTTCAATCTGAACCGTTTGATTGGTCAAGTGGTTTC
CTCTGTTACAGCTTCCTTGAGATTCGAAGGAGCTTTAAACGTCGATCTGA
ATGAGTTCCAAACAAACTTGGTCCCATACCCCAGAATCCATTTCCCAATT
ACGTCATTTGGTCCTATCATGTCAGCTGAAAAAGCGTCTCACGAAAATCA
TAATGTCCAAGAAATCACCAATGCTTGTTTTGAACCACAGAATCAAATGG
TGAAATGCGATCCTCGACATGGGAAATACATGGCTTGTTGTCTTCTATAC
CGTGGCGAAATCGTCCCCAAAGATGTCAACACCGCAATTGCTCAAATCAA
GACCAAACGAACCATCCAGTTTGTGAATTGGTGCCCAACTGGATTTAAAG
TTGGGATCAATAACAATGCCCCTGTCGTTGTTCCTGGAGGTGATTTAGCT
CAAGTCAAGAGGGCTGTTTGTTCCTTAGCTAATACGACTGCTATTGCTGA
AGCCTGGTCAAGTCTCGATCATAAGTTCGATTTGATGTATGCTAAACGTG
CTTTTGTACATTGGTATGTCGGTGAAGGTATGGAAGAAGGAGAGTTCTCC
GAAGCTCGTGAAGATTTAGCCGCCTTGGAAAAAGATTACGAAGAAGTTGG
AATGGATAAtgttgatgaagaagaagatgatgaacttttttaaatgacgA
GATTGCTCTATTGGAATGATATTCTCGAAGAGAACTAGAAACTTCGTACT
ACTTGGTATACACTTTTTGTTAAAGATCCagtaaatttttattcaaattt
tgctgTTCTAATTTTTTGAAAGCCTCA
Run BLAST on NCBI

transcript from alignment at scaffold_200:127434..131661+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051292 ID=TCONS_00051292|Name=TCONS_00051292|organism=Clytia hemisphaerica|type=transcript|length=4228bp|location=Sequence derived from alignment at scaffold_200:127434..131661+ (Clytia hemisphaerica)
GCCAAATTTTTTCATATCAAAAGGCAAGTAAGCGTATATTTTTTAGTATT
ATAATTTTCGTTCATGACATGAGCTTTAATGACTCACCTTTTACTTAAAA
TGCtaactgaaaatctttttaaattttctttatagAGGCTTTCTGCGTGA
TCTTTTCTCACTCTATCGATTCATAAGATTTGTGGTATCGCAAAAATACA
AAGCGTGTTTCTTATCGCAGAAATTTGTGGTTTAAGCGGTACCACCTCTA
CGTGATAATGAGAAATTACTCAAATAGAAACCACTCTTTCTTTTGCAGTA
GAAATCTCCCAAGACATGGTTTACACGTTCAgtgatattgatatttttat
cgAAGTTGTATTTTTAGGTTGACTCCTATATTCGTGATTGATCAGAACTG
acagaaaactttttgaaacgcGTTGCAGTCAAAGTATTCGTCGAAAATGG
TAAGAGATTTGTCTTTCCTCGTAACCTATGCTTTCTGTCTACAATCTTTA
AAATCTTAGGGAAAATGTCCCTTTTGAAAGGGATGGTTAGCATTTGTATG
TCTTTCTTTCCTTTCTAATTATTTAAGCTTTAGTTGAGACATGCAAatgt
tttcttaatttttcagagaGAGTGTATTTCAGTTCACGTTGGACAAGCTG
GTGTCCAAATCGGAAACGCTTGTTGGGAATTGTACTGTTTGGAACATGGA
ATCCAACCTGATGGTGAAATGTCTTCAGACACAACCACCAATGACTCGCT
TTCCACTTTCTTCAGCGAGACGGGGACTGGCAAACGTGTCCCCAGAGCTG
TCTTTGTTGACTTAGAACCTGCAGTCATTGGTAAGTGATattcaaaaaga
tttgaaatgaTTATGCTTAAATCATTTTAGAACAAGATCCTATGTGTAAT
Acggtcaactctctctaattcgaatctctattattcgaatatttctgtaa
tttgaacaaAAACAAGATGCTTTCATTTTTCACCACACTCTCctctaaaa
ttacaaaataagatttagttattttccttcaaaaatacacaaTGGACAGT
TTTCATTCTACCTGTCATGGTCTCCTGTTCACATTGCACTATTCCGTTAT
CTCCTTCATAATTTTCCATGTTCAAAAACGATATGCTCAATTACGAATGA
TCCCAAACcaataaaaacttttcattaTTTCTCACTAAAAGTCTTACACA
CATTTATAACAACTCTAATTTAAATTTCACATATTCGATACTTTTTTTAG
GCTCGTCATGCTAACACGAATTATTTATTTAATGATAGATCTCAATCTCA
TATCATCTTTGGAGATTCCGCGACCACATGCTAAATTATGTTTGAGTTGT
CCACAAGCTCCTATGCTCTCAAGGTTCCAAATATTAAAACGATATATTTA
ATTATGAATAATCATGATTtgcatataaaaatatttttcgtactCCATTA
CCACATTTTCTCGCTAAAAATATGCAACATGACCCAAATTCATCTATCAT
ATTTATGGATTGATGAACATATATGGATTGACAAGTTTGacacattttcc
ttcaaaaatacacgaTGGCCTTTTTCATAATATTATTAGCCTTCTCacat
gaatttatttttttatcacaCCTTCCTTCAAATATACAAAATaagtataa
aaaaattctacacattttccttcaagaatacacaATCGATAGTTTTCTTT
TAATTGTCTGCATTATTACGTGATTTCCTccataacttttcaaaaatcta
agaTAGTGGGTTTCAGCCGAACTAATATCTTACTAACCCATAACCACTTT
TATCCATGACAACTACTTTAGCTTTTCTCGATGTGCACGACCCGCAAACC
TCATAAATTTCGGTTACATGCAGGATAACCCCTTCATGATACCGGTTTTT
ATGATGGTTTTTTTTAATGTGAGGTTACCTCTGTTTGATCTGTTTAATTG
GATTCAGCATGACTTATTCACCTCAAACTTACTGATTTATAATCGAGTGT
CTGGTTTTTTTCCTCAAACATTATACACTACTAGAAGAACCAGTTCTCCA
TTTTTAGGTGAACCTTACACATGAACCTTTTTCAAGtcttaatgaaaatt
ttcatcttttaatatgttttattatatagatGAAGTGCGTTCCGGTACAT
ACCGTTCACTTTTTCATCCGGAACAATTGATCACCGGAAAAGAAGATGCC
GCAAACAATTACGCTAGAGGACATTATACCGTCGGTGAGAATTAAATCTT
TTTATCCTTTAAGAATGATGTCAAGTTTTCTATCTCTTTCAGCTAAAATC
AACAAATAACGAATTTCAAACTCTCTATACTCATCCAGGGTAAAAGAACA
CAAAAAATCCATCTATTGATTCTACCTAAAAGAGTGAATCTAGAATTAGT
CAAAAAGAGCGAGTGCCatcctttttttctaaaatctgaGTCGTTGAATA
CTCAAATAAATGAGCAGGTCGAGTTTGCTAAGTCCATTGAGGAATTCTCT
GATATATTCACATCTTAGGGAAGGAGTATATTGATCAAACATTGGATCGA
ATCCGCAAATTATGCGATCTTTGCACCGGTCTTCAGGGGTTCTTGATTTT
TCATTCGTACGGAGGAGGAACTGGGTCCGGCTTCACATCCCTTCTCATGG
AACGTTTATCAGTGGAATATGGAAAGAAAGCTAAGCTAGAATTTTCTATC
TACCCTTCTCCAAAAGTTTCCACCGCTGTCGTTGAACCTTACAATGCTAT
TCTTACAACCCACACTACCTTGGAGCACTCAGATGTCGCTTTCATGGTTG
ATAATGAAGCTATCTACGATATTTGCAAACGTAATTTAAGTGTTGATCGT
CCATCATATTTCAATCTGAACCGTTTGATTGGTCAAGTGGTTTCCTCTGT
TACAGCTTCCTTGAGATTCGAAGGAGCTTTAAACGTCGATCTGAATGAGT
TCCAAACAAACTTGGTCCCATACCCCAGAATCCATTTCCCAATTACGTCA
TTTGGTCCTATCATGTCAGCTGAAAAAGCGTCTCACGAAAATCATAATGT
CCAAGAAATCACCAATGCTTGTTTTGAACCACAGAATCAAATGGTGAAAT
GCGATCCTCGACATGGGAAATACATGGCTTGTTGTCTTCTATACCGTGGC
GAAATCGTCCCCAAAGATGTCAACACCGCAATTGCTCAAATCAAGACCAA
ACGAACCATCCAGTTTGTGAATTGGTGCCCAACTGGATTTAAAGTTGGGA
TCAATAACAATGCCCCTGTCGTTGTTCCTGGAGGTGATTTAGCTCAAGTC
AAGAGGGCTGTTTGTTCCTTAGCTAATACGACTGCTATTGCTGAAGCCTG
GTCAAGTCTCGATCATAAGTTCGATTTGATGTATGCTAAACGTGCTTTTG
TACATTGGTATGTCGGTGAAGGTAAGAGAATAATGAGAATAACCCTGTCT
CAAGAGTTAGAATTCTCAGTATAGTACTGTATTGAGGAAGGAAACCATAG
TCTTAATGGCAGACCTCTTCAAAGCTACAGGTAGGGTATAACAGGCCCGA
ccgaagcggggagactggggagactggggagacttcagcctccccagtTT
TGAGCAAATAGAAttcttttctcaaattcctagcaaattttatctcattt
tgagccttcagcctccccactttaacggttgttccgccggacTTGTAAGG
ATACAAGATTTCAGCATTCTAACGAGGCGCCAATACCAACCAAAGCTTTG
ATCAATACATATTCACAGCGGGTCATGTATTACTTTTAATTgggctttta
attttttggttaACCTTCTCACTCTCAGAGCAGTTGAAGGCAGTGAATGA
TTTTACTTGTTGCTTGAATCGAATGAGATTGgctcagatgagatggagtt
gttgtaaaaactccatcttgtCCCTATTAGGTAGGTTGGTTTATTCACAC
TATTATCTGTACTGATTTCCTTATCTAGGTATGGAAGAAGGAGAGTTCTC
CGAAGCTCGTGAAGATTTAGCCGCCTTGGAAAAAGATTACGAAGAAGTTG
GAATGGATAAtgttgatgaagaagaagatgatgaacttttttaaatgacg
AGATTGCTCTATTGGAATGATATTCTCGAAGAGAACTAGAAACTTCGTAC
TACTTGGTATACACTTTTTGTTAAAGATCCagtaaatttttattcaaatt
ttgctgTTCTAATTTTTTGAAAGCCTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032509XLOC_032509Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051292-exon-scaffold_200-1491911889:127434..127456TCONS_00051292-exon-scaffold_200-1491911889:127434..127456Clytia hemisphaericaexon
TCONS_00051292-exon-scaffold_200-1510915933:127434..127456TCONS_00051292-exon-scaffold_200-1510915933:127434..127456Clytia hemisphaericaexon
TCONS_00051292-exon-scaffold_200-1575043694:127434..127456TCONS_00051292-exon-scaffold_200-1575043694:127434..127456Clytia hemisphaericaexon
TCONS_00051292-exon-scaffold_200-1491911889:127801..127882TCONS_00051292-exon-scaffold_200-1491911889:127801..127882Clytia hemisphaericaexon
TCONS_00051292-exon-scaffold_200-1510915933:127801..127882TCONS_00051292-exon-scaffold_200-1510915933:127801..127882Clytia hemisphaericaexon
TCONS_00051292-exon-scaffold_200-1575043694:127801..127882TCONS_00051292-exon-scaffold_200-1575043694:127801..127882Clytia hemisphaericaexon
TCONS_00051292-exon-scaffold_200-1491911889:128050..128263TCONS_00051292-exon-scaffold_200-1491911889:128050..128263Clytia hemisphaericaexon
TCONS_00051292-exon-scaffold_200-1510915933:128050..128263TCONS_00051292-exon-scaffold_200-1510915933:128050..128263Clytia hemisphaericaexon
TCONS_00051292-exon-scaffold_200-1575043694:128050..128263TCONS_00051292-exon-scaffold_200-1575043694:128050..128263Clytia hemisphaericaexon
TCONS_00051292-exon-scaffold_200-1491911889:129563..129667TCONS_00051292-exon-scaffold_200-1491911889:129563..129667Clytia hemisphaericaexon
TCONS_00051292-exon-scaffold_200-1510915933:129563..129667TCONS_00051292-exon-scaffold_200-1510915933:129563..129667Clytia hemisphaericaexon
TCONS_00051292-exon-scaffold_200-1575043694:129563..129667TCONS_00051292-exon-scaffold_200-1575043694:129563..129667Clytia hemisphaericaexon
TCONS_00051292-exon-scaffold_200-1491911889:129952..130854TCONS_00051292-exon-scaffold_200-1491911889:129952..130854Clytia hemisphaericaexon
TCONS_00051292-exon-scaffold_200-1510915933:129952..130854TCONS_00051292-exon-scaffold_200-1510915933:129952..130854Clytia hemisphaericaexon
TCONS_00051292-exon-scaffold_200-1575043694:129952..130854TCONS_00051292-exon-scaffold_200-1575043694:129952..130854Clytia hemisphaericaexon
TCONS_00051292-exon-scaffold_200-1491911889:131412..131661TCONS_00051292-exon-scaffold_200-1491911889:131412..131661Clytia hemisphaericaexon
TCONS_00051292-exon-scaffold_200-1510915933:131412..131661TCONS_00051292-exon-scaffold_200-1510915933:131412..131661Clytia hemisphaericaexon
TCONS_00051292-exon-scaffold_200-1575043694:131412..131661TCONS_00051292-exon-scaffold_200-1575043694:131412..131661Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_200supercontigscaffold_200:127434..131661 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.713605	0.79013	1.02342	0.574573	0.174356	0	0.386818	0.201187	0.277072	0	0.293318	0.398822	0.676082	0.288451	0.426621	0.557723	125.835	158.429	1.44243	1.11881	13.5968	11.7599	10.9076	14.1507	45.2692	17.8297	0	0.0510014	0.14539	0
Blast
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BLAST of TCONS_00051292 vs. Swiss-Prot (Human)
Match: TBA3C (Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C PE=1 SV=3)

HSP 1 Score: 741.11 bits (1912), Expect = 0.000e+0
Identity = 367/440 (83.41%), Postives = 405/440 (92.05%), Query Frame = 1 
Query:  103 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGEMXXXXXX---XXXXXXXXXETGTGKRVPRAVFVDLEPAVIDEVRSGTYRSLFHPEQLITGKEDAANNYARGHYTVGKEYIDQTLDRIRKLCDLCTGLQGFLIFHSYXXXXXXXXXXXXMERLSVEYGKKAKLEFSIYPSPKVSTAVVEPYNAILTTHTTLEHSDVAFMVDNEAIYDICKRNLSVDRPSYFNLNRLIGQVVSSVTASLRFEGALNVDLNEFQTNLVPYPRIHFPITSFGPIMSAEKASHENHNVQEITNACFEPQNQMVKCDPRHGKYMACCLLYRGEIVPKDVNTAIAQIKTKRTIQFVNWCPTGFKVGINNNAPVVVPGGDLAQVKRAVCSLANTTAIAEAWSSLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDNV 1413
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDG+M SD T    +DS +TFFSETG GK VPRAVFVDLEP V+DEVR+GTYR LFHPEQLITGKEDAANNYARGHYT+GKE +D  LDRIRKL DLCTGLQGFLIFHS+GGGTGSGF SLLMERLSV+YGKK+KLEF+IYP+P+VSTAVVEPYN+ILTTHTTLEHSD AFMVDNEAIYDIC+RNL ++RP+Y NLNRLIGQ+VSS+TASLRF+GALNVDL EFQTNLVPYPRIHFP+ ++ P++SAEKA HE  +V EITNACFEP NQMVKCDPRHGKYMACC+LYRG++VPKDVN AIA IKTKRTIQFV+WCPTGFKVGIN   P VVPGGDLA+V+RAVC L+NTTAIAEAW+ LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+D+V
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440
The following BLAST results are available for this feature:
BLAST of TCONS_00051292 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBA3C0.000e+083.41Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C... [more]
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