TCONS_00051296 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051296
Unique NameTCONS_00051296
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1793

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051296 ID=TCONS_00051296|Name=TCONS_00051296|organism=Clytia hemisphaerica|type=transcript|length=1793bp
CTCGTAATACTCATTATGTTGGAGAGCTATAGATAAAATGTCTCCTATTT
GTTGATAAATAAGCCGCCAACAATAGGAAAACAACCAATTAGAAACGAGT
attgtctaccattttgaattcaCAAACGTGGCTTTTATATGTAATGAAGT
AATGAAGTGAGTTTTAaagtttgacatttttgaatttcgttTCAATACGT
TAAACGCTCACTGGAGGAAAAACTTTTATCGTTACTATAGTTTTTTACTA
GTTTGCAAAAATGaGAGAGTGTATTTCAGTTCACGTTGGACAAGCCGGTG
TCCAAATCGGAAATGCTTGTTGGGAATTATATTGTTTGGAGCATGGAATC
CAACCTGATGGTCAAATGCCTTCAGATAAAACCATTGGAGGGGGAGATGA
TTCATTCAACACTTTCTTCAGTGAGACTGGTTCTGGTAAACACGTCCCCA
GAGCTGTTTTCATCGATCTTGAACCCTCAGTTGTTGACGAAGTGCGTACC
GGTACATATCGTTCACTTTTTCATCCGGAACAATTAATCACCGGAAAAGA
AGATGCCGCAAACAATTACGCTAGAGGACATTATACTGTCGGCAAAGAAT
ACATTGACCAAACCTTAGACCGAGTCCGAAAACTGTCCGAGAATTGCACC
GGTCTTCAAGGATTCTTGATCTTCCACTCTTTCGGTGGAGGTACCGGATC
TGGATTCTCATCCTTGTTGATGGAACGTCTCTCCGTCGACTATGGAAAGA
AGTCGAAATTAGAATTCGCTATCTATCCAGCACCGCAAGTCTCCACAGCT
GTCGTTGAACCATACAATTCCATCTTGACCACCCACACAACTTTGGAGCA
CACTGATTGTGCTTTCATGGTTGATAATGAAGCCATTTATGATATCTGTC
GTAAAAACTTAGATATTGAACGACCTTCCTACACGAACTTGAACAGATTG
ATCAGTCAAATCGTCTCCTCAATCACAGCTTCCCTTCGATTTGATGGATC
CTTGAATGTTGACTTGACCGAGTTCCAAACTAACTTGGTCCCATATCCCA
GAATTCATTTCCCAATGGCTACCTACGCTCCAGTTATCTCCGCTGAGAAA
GCTTTTCACGAACAGATCACCGTAGCTGAAATCACCAACGCTTGCTTTGA
ACCACAGAACCAAATGGTGAAATGCGATCCACGACATGGCAAATACATGT
CATGTTGTCTACTCTACCGTGGTGATGTTGTCCCTAAAGACGTCAATGCT
GCTATCGCCAACATCAAAACTAAACGAACCATCCAATTCGTTGATTGGTG
TCCAACTGGATTCAAGATTGGAATCAATTACCAACCACCATGTGTTGTCC
CAGGAGGTGACCTCGCTAAAGTCCAACGTGCAGTTTGTATGTTGTCTAAC
ACTACTGCTATTGGAGAAGCCTGGGCTCGATTGGATCATAAATTCGATTT
AATGTATGCCAAACGTGCTTTTGTACATTGGTATGTGGGAGAAGGTATGG
AAGAAGGAGAGTTCTCAGAAGCTCGTGAAGACATGGCCGCTTTGGAGAAA
GATTACGAAGAAGTTGGAATGGATAGTGGTGACGCTGATGAAGCCGAAGA
TGATGAATATTAAATGCGAAGGAGCCAAAGACCAAATATGGAATTGCATG
CTTGAAAATGCTCTCCGTCACATTGACTATTTAATAAGAATTTGCTACCA
TCGTGCCGTctgaagtttttttcatttatcattttTGCCATTATTTAATG
AACGAGGAGAATAATATTTCATTCATTCAAACTATAAATAACG
Run BLAST on NCBI

transcript from alignment at scaffold_200:133575..138479+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051296 ID=TCONS_00051296|Name=TCONS_00051296|organism=Clytia hemisphaerica|type=transcript|length=4905bp|location=Sequence derived from alignment at scaffold_200:133575..138479+ (Clytia hemisphaerica)
CTCGTAATACTCATTATGTTGGAGAGCTATAGATAAAATGTCTCCTATTT
GTTGATAAATAAGCCGCCAACAATAGGAAAACAACCAATTAGAAACGAGT
attgtctaccattttgaattcaCAAACGTGGCTTTTATATGTAATGAAGT
AATGAAGTGAGTTTTAaagtttgacatttttgaatttcgttTCAATACGT
TAAACGCTCACTGGAGGAAAAACTTTTATCGTTACTATAGTTTTTTACTA
GTTTGCAAAAATGGTGAGTTTTCGCATTTTTTGGCTCGTTTGCTAAAAAT
GACCATTTAGTCACTTGAAGATTGTTGATGCATTGTTGAGAACAATAGAT
ATTCGATTTCGAACAATAGCCAACTATAACGAAATATATTTTGTAGAATT
TGACGGCGTGGACGTTCTAAAAGCAGCCTAACTgactaaatatttctttt
ttctcagaGAGAGTGTATTTCAGTTCACGTTGGACAAGCCGGTGTCCAAA
TCGGAAATGCTTGTTGGGAATTATATTGTTTGGAGCATGGAATCCAACCT
GATGGTCAAATGCCTTCAGATAAAACCATTGGAGGGGGAGATGATTCATT
CAACACTTTCTTCAGTGAGACTGGTTCTGGTAAACACGTCCCCAGAGCTG
TTTTCATCGATCTTGAACCCTCAGTTGTTGGTAAGAGCCAAAGTTATTTA
ATAAACTAATTCTTATTTTTCTGCTCACTGTATTTTGTTTGGTATAGACA
CAGCGATATTACAAAGATGTCTCTCGTAAAGCTTTAAACCCCTTGTCAat
taattcttgatatgcgtaagtcatttttctagcggaaacacccgaaaaaa
tccgggatttgacccctctctgttactaaaaatagaaacacagaggtcaa
aatccggcttttttgggtgcttccgttaaaaatatgacgtcatcttgact
tacgcatatcaagaataagaGAATTTAAACCTTAGACGGCATTCCAAACA
TTTACAATTTGGGACGGGCTTAAGACTGAAAACATCCGTTTAGATCAGCT
TTTTCTGACGATGATGGTATAATAACATTGTTGGTACTGCCTCAGTAATA
CTATTAGAAAGTAATTCATGCCAAACTGTACCACGATGCTAATGAAATTT
CTCTTCACGTGAAACGCCCTGTTTGCCATTCAAAATGAACATTAATTTTC
CCTCTTTGTTATCTACTAATTAATTTGCTTGCATGGAAAATAATGCGGTT
ACCATAGCAACTTGATTGCTAGGAGGTATACAAAACAACGTATTTCTATA
GATTCATATGTTTTGATTCCACGCCTTATCGAGAATAATATTTGCGCTTT
TAGAAGCGTTAGGTCACACGGTTTCTAAgagattttcaacaaaaaacttt
ttacacttttttcataaGGTATCAAAATCTAGCTGCCTACttttagtaga
gggcattttgtaaaatcgctcgactgttttgttagaagcacttgttatac
atctttggaaagctaaggggtaggggaatcgaaatttctatgtttccaat
tttttttcggacactttggtgtgattttcggacaaatatgacggtctcag
gcaaaaatcatagggttaaaaattaatgaaaattttagctcgagaaaatt
gaaacctgttgtatatttttggaaagctctcaaaaaaataggattagaga
tatattgcaagtataggtgatttcagtacctaactcgagatattgagctt
caaaaagcgcaaaaactggacaaaatagctgtttctggctgaaaaacacg
gttttcaagggttaatatctcgagttaggtacaaaAATCACCTaaacttg
caatatatctctaatcttatttttttgagagctttccaaaaatatacaac
aggtctccgttttctcgagctaatattttcattaatttttaaccNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNttcccctaccccttagctttccaaaaatgtataacaagtgc
ttctaacaaaacagtcaagcgattccaaaaaatcgaacaaaattccccct
actatttcTTACAAATccctgaaagtttttttctttcaaatcttttaCTT
ATTCATgaaattcatgacgtaatgtttttaacggaaataccccggtttaa
GCAAGTAGTGACAAATTTAAACCAGACAAAAGTTACATGAAATTTGCTAC
ttctggcaaaaaccggggtctttccgtagaaatcattacgtcattaatat
catgaatacgtaACAGAATAACATTCTTTCTTGTACATAATAGCTTTTGG
AAATCCTTGCTAAATCTTCTAATTAAACTTCGTTACCGCCCTAGCAATTC
AAAAAGGATGAGTCTTTATACCGTCTAATTGCCgtctttttgaaaaacat
tcttTGACATATGTTATCAAAATTGATATATCTTTTACTTCATAATTGTA
AAGCTGTATGGCTCTTGCAATATGCATTTGCTCGAAATTTGTTGCCAAAT
TTTTAGCAACCTCCTGTTTTGTTCTCTAATCACCCAAAAACCTCATTAAG
CAATTAATTATATTTCGACCTCATTAACGAGCTATATCTTCTATTTTGTA
GACGAAGTGCGTACCGGTACATATCGTTCACTTTTTCATCCGGAACAATT
AATCACCGGAAAAGAAGATGCCGCAAACAATTACGCTAGAGGACATTATA
CTGTCGGTGAGgatttttttgatatttgaagttaaattattattgatgtt
tgtaaaagaattttgatattttacctCGTGGATTTTGCACTCTATTGCAG
AGAAAATTCATGAAGACACTAATCTGACGATATTGTCTTTATAATTACCG
TCTAGCTTCAAATGGAAAATTCGCCAACCTGTTAATGACCTTCTTTTTCT
CTCTCTTAGGCAAAGAATACATTGACCAAACCTTAGACCGAGTCCGAAAA
CTGTCCGAGAATTGCACCGGTCTTCAAGGATTCTTGATCTTCCACTCTTT
CGGTGGAGGTACCGGATCTGGATTCTCATCCTTGTTGATGGAACGTCTCT
CCGTCGACTATGGAAAGAAGTCGAAATTAGAATTCGCTATCTATCCAGCA
CCGCAAGTCTCCACAGCTGTCGTTGAACCATACAATTCCATCTTGACCAC
CCACACAACTTTGGAGCACACTGATTGTGCTTTCATGGTTGATAATGAAG
CCATTTATGATATCTGTCGTAAAAACTTAGATATTGAACGACCTTCCTAC
ACGAACTTGAACAGATTGATCAGTCAAATCGTCTCCTCAATCACAGCTTC
CCTTCGATTTGATGGATCCTTGAATGTTGACTTGACCGAGTTCCAAACTA
ACTTGGTCCCATATCCCAGAATTCATTTCCCAATGGCTACCTACGCTCCA
GTTATCTCCGCTGAGAAAGCTTTTCACGAACAGATCACCGTAGCTGAAAT
CACCAACGCTTGCTTTGAACCACAGAACCAAATGGTGAAATGCGATCCAC
GACATGGCAAATACATGTCATGTTGTCTACTCTACCGTGGTGATGTTGTC
CCTAAAGACGTCAATGCTGCTATCGCCAACATCAAAACTAAACGAACCAT
CCAATTCGTTGATTGGTGTCCAACTGGATTCAAGATTGGAATCAATTACC
AACCACCATGTGTTGTCCCAGGAGGTGACCTCGCTAAAGTCCAACGTGCA
GTTTGTATGTTGTCTAACACTACTGCTATTGGAGAAGCCTGGGCTCGATT
GGATCATAAATTCGATTTAATGTATGCCAAACGTGCTTTTGTACATTGGT
ATGTGGGAGAAGGTAAGAAACCGAGGTTTTTTATCATGGAATCCTGTTTA
TTTCATCTTTCAAGTTAGTCTTTTTGCAAAAGTGAGaaacattttgtttt
aaaaagttcttttaCCGCAAGGATCCCGTGACGTTTGAAATTTGTATTAG
ACCATAGCCTACAAAGTCAACATTCGTTGGTTTCATCTTAACCaattaca
atcatggtcgaaatctattgagaattaagcttatttcctcgttttttgaa
atttggagttcgggcgagaaagttgattttgggccatctctcaaatttcg
gatatttcaatttggctcgggtttatagaccTCCAGACTATactatatta
tgagccttattggaccatttttgaacatttttgaacatttggatcctcag
atcctaaggtgctaagtcttaagtctcgtgttaaaactcagagttaaaac
tctacccttccaacctactttagagcacttacaaatcgattgtggtttca
aaacttcccggtggatttccctttttttctcaaatataacgaccatgatt
gtagcattCAGTTTCGGATGttattaaccaatcaaattttatttctaATC
GCTTAGGTATGGAAGAAGGAGAGTTCTCAGAAGCTCGTGAAGACATGGCC
GCTTTGGAGAAAGATTACGAAGAAGTTGGAATGGATAGTGGTGACGCTGA
TGAAGCCGAAGATGATGAATATTAAATGCGAAGGAGCCAAAGACCAAATA
TGGAATTGCATGCTTGAAAATGCTCTCCGTCACATTGACTATTTAATAAG
AATTTGCTACCATCGTGCCGTctgaagtttttttcatttatcattttTGC
CATTATTTAATGAACGAGGAGAATAATATTTCATTCATTCAAACTATAAA
TAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032509XLOC_032509Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051296-exon-scaffold_200-1491911889:133575..133837TCONS_00051296-exon-scaffold_200-1491911889:133575..133837Clytia hemisphaericaexon
TCONS_00051296-exon-scaffold_200-1510915933:133575..133837TCONS_00051296-exon-scaffold_200-1510915933:133575..133837Clytia hemisphaericaexon
TCONS_00051296-exon-scaffold_200-1575043694:133575..133837TCONS_00051296-exon-scaffold_200-1575043694:133575..133837Clytia hemisphaericaexon
TCONS_00051296-exon-scaffold_200-1491911889:134032..134254TCONS_00051296-exon-scaffold_200-1491911889:134032..134254Clytia hemisphaericaexon
TCONS_00051296-exon-scaffold_200-1510915933:134032..134254TCONS_00051296-exon-scaffold_200-1510915933:134032..134254Clytia hemisphaericaexon
TCONS_00051296-exon-scaffold_200-1575043694:134032..134254TCONS_00051296-exon-scaffold_200-1575043694:134032..134254Clytia hemisphaericaexon
TCONS_00051296-exon-scaffold_200-1491911889:136376..136480TCONS_00051296-exon-scaffold_200-1491911889:136376..136480Clytia hemisphaericaexon
TCONS_00051296-exon-scaffold_200-1510915933:136376..136480TCONS_00051296-exon-scaffold_200-1510915933:136376..136480Clytia hemisphaericaexon
TCONS_00051296-exon-scaffold_200-1575043694:136376..136480TCONS_00051296-exon-scaffold_200-1575043694:136376..136480Clytia hemisphaericaexon
TCONS_00051296-exon-scaffold_200-1491911889:136684..137586TCONS_00051296-exon-scaffold_200-1491911889:136684..137586Clytia hemisphaericaexon
TCONS_00051296-exon-scaffold_200-1510915933:136684..137586TCONS_00051296-exon-scaffold_200-1510915933:136684..137586Clytia hemisphaericaexon
TCONS_00051296-exon-scaffold_200-1575043694:136684..137586TCONS_00051296-exon-scaffold_200-1575043694:136684..137586Clytia hemisphaericaexon
TCONS_00051296-exon-scaffold_200-1491911889:138181..138479TCONS_00051296-exon-scaffold_200-1491911889:138181..138479Clytia hemisphaericaexon
TCONS_00051296-exon-scaffold_200-1510915933:138181..138479TCONS_00051296-exon-scaffold_200-1510915933:138181..138479Clytia hemisphaericaexon
TCONS_00051296-exon-scaffold_200-1575043694:138181..138479TCONS_00051296-exon-scaffold_200-1575043694:138181..138479Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_200supercontigscaffold_200:133575..138479 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.70713	1.64343	0.791888	0.72033	3.8328	3.60622	118.817	130.718	135.566	93.9787	171.246	106.766	424.877	418.892	260.68	251.877	286.624	264.568	425.429	634.046	153.113	140.216	61.7051	73.6321	179.185	143.058	33.74	14.244	1.09395	1.06172
Blast
[Close]
BLAST of TCONS_00051296 vs. Swiss-Prot (Human)
Match: TBA1C (Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C PE=1 SV=1)

HSP 1 Score: 852.818 bits (2202), Expect = 0.000e+0
Identity = 407/440 (92.50%), Postives = 429/440 (97.50%), Query Frame = 3 
Query:  261 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGSGKHVPRAVFIDLEPSVVDEVRTGTYRSLFHPEQLITGKEDAANNYARGHYTVGKEYIDQTLDRVRKLSENCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHTDCAFMVDNEAIYDICRKNLDIERPSYTNLNRLISQIVSSITASLRFDGSLNVDLTEFQTNLVPYPRIHFPMATYAPVISAEKAFHEQITVAEITNACFEPQNQMVKCDPRHGKYMSCCLLYRGDVVPKDVNAAIANIKTKRTIQFVDWCPTGFKIGINYQPPCVVPGGDLAKVQRAVCMLSNTTAIGEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGMDSG 1580
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETG+GKHVPRAVF+DLEP+V+DEVRTGTYR LFHPEQLITGKEDAANNYARGHYT+GKE ID  LDR+RKL++ CTGLQGFL+FHSFGGGTGSGF+SLLMERLSVDYGKKSKLEF+IYPAPQVSTAVVEPYNSILTTHTTLEH+DCAFMVDNEAIYDICR+NLDIERP+YTNLNRLISQIVSSITASLRFDG+LNVDLTEFQTNLVPYPRIHFP+ATYAPVISAEKA+HEQ+TVAEITNACFEP NQMVKCDPRHGKYM+CCLLYRGDVVPKDVNAAIA IKTKRTIQFVDWCPTGFK+GINYQPP VVPGGDLAKVQRAVCMLSNTTA+ EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVG DS 
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADSA 440
The following BLAST results are available for this feature:
BLAST of TCONS_00051296 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBA1C0.000e+092.50Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C P... [more]
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