|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051302 ID=TCONS_00051302|Name=TCONS_00051302|organism=Clytia hemisphaerica|type=transcript|length=2873bp
GAATAATCATAATATAAACTCatcgtaaaaaaaaacattaacagATAATG
GCTGCAAAACCGATATCGGCAGACACTCCTCAAGCTCAACAAGCCAAGAA
AGAAATTCTTCTCATATTTGATTTTGATAACACAATCATTGACAAAAATA
CAGACTCAGAAATCATTAAAGCACAAAATTTATATGGAAAATGTTTGTCA
GGGAAGAGGTATTTAAAAAACGACCTTGGTTGGGCTGAAACAATGTCCCT
GGCGCTGGCTGATCTTCACCAAAATAACATCTCTCAAAAGGACATTGATA
AAATTATCGAAGATATACCATTGACTCctggttttgaaaaagtttttgaa
tttttacgtCAGAATCAAGAGAAATGTGAATGCATAATGTTATCACATTC
GAACAGTTATTTCATAGATTTATTGGTGAAGAAATATTCAATTGgtgatt
gttttgattctaTACACACATACGAAGCAGAATGGATGAAGGATGCACCT
CTTCTGGTCAAACCTTATCATCCATTCCTTGTCAATTGTCAAATCTGTCC
ACCAGATTTCTGTAAAGGTGTTTTCGTCGAGACGTATCGTGAACAAACAG
AATGGTCACGTgatatgaaatggaaaaacattttctatGTTGGTGACGGT
GCTGCAGATTTTTGTGCTGCTTTATCTCTACAATGTCACGAACACGTGTT
AACGAGGACAGGTTATTCTATGCATATGAGGTTGTTGAAAGATAAGGGAG
ATAAATTTAAGGCGAATATGATTGAATGGAATAACGGACATGATGTGGAG
AAGATTTTAAAGAGTAGGATAGATGATGCAATATAATTGAACAAATAAAT
GAGACTTACCTAAGTTGATATTTATTTGTGATTTTATGATTTCTAGTTTC
CAGTAACGATGAGAGAGATTATAATAGCGAAGAGAACGCGGAGTGGAACA
GTCAGTATTGGCAAGTAATCAGCTTACAGAAATAACGATGAGAGAGATAC
CTGGGAGGGTAAAGCACCTGGGTGGGCGCTATAATCTCTCTCATCGTTAC
TGGAAACTAGAAATCATAAAATCACAAATAAATATCAACTTAGGTAAGTC
TCATTTATTTGTTCAATTTTACGTCATTCTAGTTTCCAGACTCTTCGAGA
GTATAGTGAAGATTTCGCAAGTTTTTCTGTAAGCCAATGCGAGAGGTAGG
TTTTAACGAAATAGATATCATTTGacaccttttttggtaattctgtgaat
taaaaatatataatgcaACTTACATCAAGGTAGGTAAAAATAGTATTATC
ATACTATCAAAAAACACAACTAGTGTCATgaactttagaaaaaattctcA
GCAGATAATCAATAAATAAAGAACATTCAAACTAAATCTAATTCGCATCT
CATTTAGTTAGTACGTAAATAGCTTCTAATACGCcagatttgcccaaaat
ttcatATACATAACTCAAAGTAATATTATAATTATAGTAAACTATGAAAT
AGTGTTAATTTTTTCAAGTGACAATGTCAAAGTCGCATTCAATTGTCCTT
TGATAAGTGGTTGCAAACATACGTTCATTTTTCCAACCAGCTATGTTGAT
AATCGTTTTTAGAGGTATCCACTTTTTGGATGCTTTAGATGTAGCTGCCG
ATCTAGAAGAATGGGTCGTATATTTAGAAATATCAATACCGGACAACCTT
AGCACCTCTTTACACCAGCGTGAAATTGTGTCTTTAGATACAGGTTTATG
CGGTTTTGCAAAGCTAACGAACAGCTGTTTTGCATTTGGTGCTAAGGTTT
CAACTCTATTAATGTATTCTTTTAAGTGTATCACTGCACACAACTTATGT
TCAGAAAACATTTTGAATTCTAAGGGTTCCACATGGTTTGTGGCTTTTGT
TTGCTTCAGTTTTTCCATAATAGGAATGTAAACTGATGTTTCGTCAAATT
TGACATCAGCTCTTGCAATGCAATGTATGGTTTGTGACCTATGACCCCCT
GATATCAACATTAAAAGCATACATAGTTTTAGAGTTAGCATTTTCAGTGG
CAAGTTGGCAGTGATCTCAAGGGATCTGAAGAAATCAAAGACTTTGTTTA
CATCCCAAACGACTGTATATTTGGGGAAAGATGGCTTAGTTTCAAATACA
CCTTTCATGAATCTTTTTATAATGGGAAGTTTTCCGAAAGTTGTCCCTTG
TTTTGGAGCAAATACAGCTGAAAGAGCACTGCAAGCTGTATTGAGTCAAC
CATAGCtttgatttttctcaaataaaTTTGTTAGGAAAGCTAAGGCTTGT
GGTATTGTTGGGTCAAAAGAATCAATACCTCTTGACAAAGAGAAATCTTT
CCAAGCTGTGAGGTACTTAGCATTGGAAGATTTTGTACCTTTTCTCCAAC
TTGTAAGAAGAATGTTGATTGAGCTTTCATTTATTCCCACATTTTGATAT
CTTTGCCGGATAAGATCCCCGCCATTAGGGTAAGATTTTTGTGAAGAGGG
TGTACCAGATTTGGAGCTTGTGGCATTGTCATTACGGTTGGACAGGGTGG
AATCGTTACCAGCTTCGATCTCAGCATTTCCATGTAAGTTGTATACCATT
GCTGTTGCTTTTTCGTGTCGAATCTTGTGAAGTACACGGTCGATTAAGCT
AAAAGGAGGGAAAATGTAGCCTTTAGTGTTGGACCAGTTTTGGGCTAAAG
CATTTATTAAGTGAGCATATGGGTCAGGCCTGTAGGAGACATATTTGGGT
AGCTGAGTGTTAAGCCTACTAGCAAAATAGTCTatttttggtttgaaatt
taAAGTAGCAGTTAGAAATCCAAAGATTTCAGGATTTAGTTTCCACTCTG
CCTCTTTATACTCTCTCCTGGAT Run BLAST on NCBI transcript from alignment at scaffold_200:194363..198704+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051302 ID=TCONS_00051302|Name=TCONS_00051302|organism=Clytia hemisphaerica|type=transcript|length=4342bp|location=Sequence derived from alignment at scaffold_200:194363..198704+ (Clytia hemisphaerica)
GAATAATCATAATATAAACTCatcgtaaaaaaaaacattaacagATAATG
GCTGCAAAACCGATATCGGCAGACACTCCTCAAGCTCAACAAGCCAAGAA
AGAAATTCTTCTCATATTTGATTTTGATAACACAATCATTGACAAAAATA
CAGACTCAGAAATCATTAAAGCACAAAATTTATATGGAAAATGTTTGTCA
GGGAAGAGGTATTTAAAAAACGACCTTGGTTGGGCTGAAACAATGTCCCT
GGCGCTGGCTGATCTTCACCAAAATAACATCTCTCAAAAGGACATTGATA
AAATTATCGAAGATATACCATTGACTCctggttttgaaaaagtttttgaa
tttttacgtCAGAATCAAGAGAAATGTGAATGCATAATGTTATCACATTC
GAACAGGTGTGTCACCTTGTTGTAAATTCACTTTGCAGGATTATTCCGTC
TATTAATTTTGAACTNCCGTTTTTGAATTTATACGTCAGAATCAAGAGAA
ATGTGAATGCATAATGCTCTCGCATTCGAACAGGTGAGTCATCTTGTTGT
AAATTAACTTTGCAGGATTAttccgtttattaattttgaacTTAAAACTT
TAGTTTGCAATAAAGCGAAAGTTAATGAAACCTCTTAAATGCCAATTTTA
ATGGTTTGGTTCCAGGATAGAAAACATATTCAAAAATGAAAGGAACTGTA
AATCATGATTGAAGCCAATCCCTCAATAAATATGTTGAGACACTGCTACC
Catagctgacacacaacgttgtttcgacgttcatctaactttatatggac
gttgtgaacgttaaataaacgttgaaacaacgttgtgtgtcagttCAGTA
GCCAATTCATTACGAACAAGTCGCCATTTGCAATGTTGCGGTGCCTTTTG
GCGGCCAAAGAGTCTTAATGACAATAGGGTAAAGTCTCGTGCATTCATTG
GGAGATCGGAGCTTTTGTCGATTTTGATTTCTCTTGGCTAAGTAGCATAT
ACGAATAGATAAAATACCAGTTCAAACATTGTGTTCCCACTTTTCCATTT
CAGTTATTTCATAGATTTATTGGTGAAGAAATATTCAATTGgtgattgtt
ttgattctaTACACACATACGAAGCAGAATGGATGAAGGATGCACCTCTT
CTGGTCAAACCTTATCATCCATTCCTTGTCAATTGTCAAATCTGTCCACC
AGATTTCTGTAAAGGTACAAAAAtgttacagttgacgctctctaatttga
tgtTCTACCACTCGTTaagctccattattcgataatattgaaagtcacga
TCAACAAGAAACGCTCATAAACGACAACTTAACATTGGATACGCTCCTTT
ATTCGATTAAAATCCGATTCccattgaaaatcgaattagagagggtcaAC
TGTATTCTTAATAATGTTAACACTTTATTTTTGTAATatattacgtcacg
agcaacgcttacctcgttttcaaaatattactatGCTAATCGACTCCTAG
GGGTAATTCATAAAACGTTTACCCTATCCTGTAAATGTTTACAGACTTGA
GGACTATTATGACCTTGTTAAGTGTTCCGAAACGAGGTAGTCGTTGCACC
CAATAAATTTATAAAAGGCTATTGAGAACTCTTTTTTCTTGTTCAGATAT
GCGCTGAGCTCCTTAAGTGAACATAAACCAGTGATGtcgaagggctagaa
gtgaaTCGTTACTCTTTCTCAGGCAAGGAAAAGTGAAACCGTAAGATATA
CACCGTTATTTTTAacgacggattgaatttagcagtttctttgttttcga
gatgtatatttttttgaaatctagtagCATATTCTACTTTCAATCTGGTA
TTTGTTTAAAAACCATGCGGGCTGATCAAGGCTCGATCCTACTTAAGTAG
GATTTAGCGGCTTCGAATCCTACTAGCTTCTAGCCCTTCAGGTATTTACT
TAATTGAAATAGACCTGTTTACATTGCATTGTACAAACCAGAAAGTTTTT
CTCGATCCTCTCAGCTTTCAATGTTGCATTTTCCAGGTGTTTTCGTCGAG
ACGTATCGTGAACAAACAGAATGGTCACGTgatatgaaatggaaaaacat
tttctatGTTGGTGACGGTGCTGCAGATTTTTGTGCTGCTTTATCTCTAC
AATGTCACGAACACGTGTTAACGAGGACAGGTTATTCTATGCATATGAGG
TTGTTGAAAGATAAGGGAGATAAATTTAAGGCGAATATGATTGAATGGAA
TAACGGACATGATGTGGAGAAGATTTTAAAGAGTAGGATAGATGATGCAA
TATAATTGAACAAATAAATGAGACTTACCTAAGTTGATATTTATTTGTGA
TTTTATGATTTCTAGTTTCCAGTAACGATGAGAGAGATTATAATAGCGAA
GAGAACGCGGAGTGGAACAGTCAGTATTGGCAAGTAATCAGCTTACAGAA
ATAACGATGAGAGAGATACCTGGGAGGGTAAAGCACCTGGGTGGGCGCTA
TAATCTCTCTCATCGTTACTGGAAACTAGAAATCATAAAATCACAAATAA
ATATCAACTTAGGTAAGTCTCATTTATTTGTTCAATTTTACGTCATTCTA
GTTTCCAGACTCTTCGAGAGTATAGTGAAGATTTCGCAAGTTTTTCTGTA
AGCCAATGCGAGAGGTAGGTTTTAACGAAATAGATATCATTTGacacctt
ttttggtaattctgtgaattaaaaatatataatgcaACTTACATCAAGGT
AGGTAAAAATAGTATTATCATACTATCAAAAAACACAACTAGTGTCATga
actttagaaaaaattctcAGCAGATAATCAATAAATAAAGAACATTCAAA
CTAAATCTAATTCGCATCTCATTTAGTTAGTACGTAAATAGCTTCTAATA
CGCcagatttgcccaaaatttcatATACATAACTCAAAGTAATATTATAA
TTATAGTAAACTATGAAATAGTGTTAATTTTTTCAAGTGACAATGTCAAA
GTCGCATTCAATTGTCCTTTGATAAGTGGTTGCAAACATACGTTCATTTT
TCCAACCAGCTATGTTGATAATCGTTTTTAGAGGTATCCACTTTTTGGAT
GCTTTAGATGTAGCTGCCGATCTAGAAGAATGGGTCGTATATTTAGAAAT
ATCAATACCGGACAACCTTAGCACCTCTTTACACCAGCGTGAAATTGTGT
CTTTAGATACAGGTTTATGCGGTTTTGCAAAGCTAACGAACAGCTGTTTT
GCATTTGGTGCTAAGGTTTCAACTCTATTAATGTATTCTTTTAAGTGTAT
CACTGCACACAACTTATGTTCAGAAAACATTTTGAATTCTAAGGGTTCCA
CATGGTTTGTGGCTTTTGTTTGCTTCAGTTTTTCCATAATAGGAATGTAA
ACTGATGTTTCGTCAAATTTGACATCAGCTCTTGCAATGCAATGTATGGT
TTGTGACCTATGACCCCCTGATATCAACATTAAAAGCATACATAGTTTTA
GAGTTAGCATTTTCAGTGGCAAGTTGGCAGTGATCTCAAGGGATCTGAAG
AAATCAAAGACTTTGTTTACATCCCAAACGACTGTATATTTGGGGAAAGA
TGGCTTAGTTTCAAATACACCTTTCATGAATCTTTTTATAATGGGAAGTT
TTCCGAAAGTTGTCCCTTGTTTTGGAGCAAATACAGCTGAAAGAGCACTG
CAAGCTGTATTGAGTCAACCATAGCtttgatttttctcaaataaaTTTGT
TAGGAAAGCTAAGGCTTGTGGTATTGTTGGGTCAAAAGAATCAATACCTC
TTGACAAAGAGAAATCTTTCCAAGCTGTGAGGTACTTAGCATTGGAAGAT
TTTGTACCTTTTCTCCAACTTGTAAGAAGAATGTTGATTGAGCTTTCATT
TATTCCCACATTTTGATATCTTTGCCGGATAAGATCCCCGCCATTAGGGT
AAGATTTTTGTGAAGAGGGTGTACCAGATTTGGAGCTTGTGGCATTGTCA
TTACGGTTGGACAGGGTGGAATCGTTACCAGCTTCGATCTCAGCATTTCC
ATGTAAGTTGTATACCATTGCTGTTGCTTTTTCGTGTCGAATCTTGTGAA
GTACACGGTCGATTAAGCTAAAAGGAGGGAAAATGTAGCCTTTAGTGTTG
GACCAGTTTTGGGCTAAAGCATTTATTAAGTGAGCATATGGGTCAGGCCT
GTAGGAGACATATTTGGGTAGCTGAGTGTTAAGCCTACTAGCAAAATAGT
CTatttttggtttgaaatttaAAGTAGCAGTTAGAAATCCAAAGATTTCA
GGATTTAGTTTCCACTCTGCCTCTTTATACTCTCTCCTGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051302-exon-scaffold_200-1491911889:194363..194768 | TCONS_00051302-exon-scaffold_200-1491911889:194363..194768 | Clytia hemisphaerica | exon |
| TCONS_00051302-exon-scaffold_200-1510915933:194363..194768 | TCONS_00051302-exon-scaffold_200-1510915933:194363..194768 | Clytia hemisphaerica | exon |
| TCONS_00051302-exon-scaffold_200-1575043694:194363..194768 | TCONS_00051302-exon-scaffold_200-1575043694:194363..194768 | Clytia hemisphaerica | exon |
| TCONS_00051302-exon-scaffold_200-1491911889:195416..195576 | TCONS_00051302-exon-scaffold_200-1491911889:195416..195576 | Clytia hemisphaerica | exon |
| TCONS_00051302-exon-scaffold_200-1510915933:195416..195576 | TCONS_00051302-exon-scaffold_200-1510915933:195416..195576 | Clytia hemisphaerica | exon |
| TCONS_00051302-exon-scaffold_200-1575043694:195416..195576 | TCONS_00051302-exon-scaffold_200-1575043694:195416..195576 | Clytia hemisphaerica | exon |
| TCONS_00051302-exon-scaffold_200-1491911889:196399..198704 | TCONS_00051302-exon-scaffold_200-1491911889:196399..198704 | Clytia hemisphaerica | exon |
| TCONS_00051302-exon-scaffold_200-1510915933:196399..198704 | TCONS_00051302-exon-scaffold_200-1510915933:196399..198704 | Clytia hemisphaerica | exon |
| TCONS_00051302-exon-scaffold_200-1575043694:196399..198704 | TCONS_00051302-exon-scaffold_200-1575043694:196399..198704 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_200 | supercontig | scaffold_200:194363..198704 + |
Blast
BLAST of TCONS_00051302 vs. Swiss-Prot (Human)
Match: PHOP2 (Pyridoxal phosphate phosphatase PHOSPHO2 OS=Homo sapiens GN=PHOSPHO2 PE=1 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 4.619e-32 Identity = 75/245 (30.61%), Postives = 130/245 (53.06%), Query Frame = 3
Query: 102 EILLIFDFDNTIIDKNTDSEIIK-AQNLYGKCLSGKRYLKNDLGWAETMSLALADLHQNNISQKDIDKIIEDIPLTPGFEKVFEFLRQNQEKCECIMLSHSNSYFIDLLVKKYSIGDCFDSIHTYEAEWMKDAPLLVKPYHPFLVNCQICPPDFCKGVFVETYREQTEWSRDMKWKNIFYVGDGAADFCAALSLQCHEHVLTRTGYSMHMRL--LKDKGDKFKANMIEWNNGHDVEKILKSRIDD 827
+ILL+FDFDNTIID N+D+ I++ A N Y K W E M L + + ++ + + +P TPG ++F F+R+N++K +CI++S SNS FID +++ S D FD + T A + + L V+ YH +C CP + CK V + + ++ + + + + I Y+GDG D C L+ + + R GY++ L + + + +++ W++G D+ L+ I D
Sbjct: 2 KILLVFDFDNTIIDDNSDTWIVQCAPNKKLPIELRDSYRKG--FWTEFMGRVFKYLGDKGVREHEMKRAVTSLPFTPGMVELFNFIRKNKDKFDCIIISDSNSVFIDWVLEAASFHDIFDKVFTNPAAFNSNGHLTVENYHTH--SCNRCPKNLCKKVVLIEFVDK-QLQQGVNYTQIVYIGDGGNDVCPVTFLKNDDVAMPRKGYTLQKTLSRMSQNLEPMEYSVVVWSSGVDIISHLQFLIKD 241
The following BLAST results are available for this feature:
|
