TCONS_00051304 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051304
Unique NameTCONS_00051304
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1118

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051304 ID=TCONS_00051304|Name=TCONS_00051304|organism=Clytia hemisphaerica|type=transcript|length=1118bp
CGAAAAAACCAAGGCTAAAATACCTCCAACCAACaagattttcactgatt
ttatGGGCAATCCTACTAATGCTTCCATTCATCTTACTCCAACAACTCCA
ATGGCTGTATATAAacttattgaaaaaattgacttGAAAAAGGCGTCTGG
CCCTAACAGTATCGATCCTAAAATTCTAAAGATGACATCAATTACTGCTA
GTGAAATTATATCTTACATATTCAATGAATGTCTTGACAAAGGTGAGTAT
CCTGACTGTCTAAAAAAAGCAAATATTAAGCCTCTCCACAAAAAGAACGC
TAGGACCGAGGTAAGTAATTATAGGCCAATCTCTTTACTAtcaaacataa
ataaaatttttgaaactttattaCATTCCAGGCTTgctgaattttttgaa
aaacaatcagtgattttcaaaaACCAGTTCGGATTTAGAAAGGGGCATAG
TACAACACATGCTATCACAGCACTCACAGAAATTGTCAGAAGCTCACTTG
ACAAAACTGAATTTTCAGCCGCAGTATTTCTTGACCttcaaaaagctttt
gataCTGTTGATCACaatattttattgcaaaaactatgtCATTATGGAGT
AAGAGGAGTTGCTCTAAAGGTTTTTGAATCCTATCTTAAAAACAGATCTC
AATGTGTTGTCATAAATGATGCAAAATCAAACTATCATGAAGTCAAGCAT
GGGGTGCCTCAGGGGTCTGTTCTAGGACCCCTTATGTTCATTATCTACAT
AAATGATTTGCATAATTCAGTTTGTTATTCCACTTCCATTCATTTTGCAG
ATGACACCAGTTTAGTATTCACTGAGAAATCACTGAAAGAACTGAACAGG
ATAGTAAACAGAGATCTTGCTCTACTTGTTCATTGGCTCAGAGCCAATAA
GATAAGTCTCAATACATCAAAAACCGAAATTATTTTATTCAGAACTATCA
gaacaaaaatcacaaaacaTTTAAACTTCAGATTAAGTGGACAGCAAATC
AAACCTTCCCATCATGCTAAATATCTTGGTGTTATAATTGATGAAAATCT
TAACTGGGATACTCATCTGCTCAAACTTTCTCAAAAACTTGCTAGCACTG
AAACTTAGAGAGGATCAC
Run BLAST on NCBI

protein sequence of TCONS_00051304-protein

>TCONS_00051304-protein ID=TCONS_00051304-protein|Name=TCONS_00051304-protein|organism=Clytia hemisphaerica|type=polypeptide|length=368bp
EKTKAKIPPTNKIFTDFMGNPTNASIHLTPTTPMAVYKLIEKIDLKKASG
PNSIDPKILKMTSITASEIISYIFNECLDKGEYPDCLKKANIKPLHKKNA
RTEVSNYRPISLLSNINKIFETLLHSRLAEFFEKQSVIFKNQFGFRKGHS
TTHAITALTEIVRSSLDKTEFSAAVFLDLQKAFDTVDHNILLQKLCHYGV
RGVALKVFESYLKNRSQCVVINDAKSNYHEVKHGVPQGSVLGPLMFIIYI
NDLHNSVCYSTSIHFADDTSLVFTEKSLKELNRIVNRDLALLVHWLRANK
ISLNTSKTEIILFRTIRTKITKHLNFRLSGQQIKPSHHAKYLGVIIDENL
NWDTHLLKLSQKLASTET
Run BLAST on NCBI

transcript from alignment at scaffold_200:219312..221371+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051304 ID=TCONS_00051304|Name=TCONS_00051304|organism=Clytia hemisphaerica|type=transcript|length=2060bp|location=Sequence derived from alignment at scaffold_200:219312..221371+ (Clytia hemisphaerica)
CGAAAAAACCAAGGCTAAAATACCTCCAACCAACaagattttcactgatt
ttatGGGCAATCCTACTAATGCTTCCATTCATCTTACTCCAACAACTCCA
ATGGCTGTATATAAacttattgaaaaaattgacttGAAAAAGGCGTCTGG
CCCTAACAGTATCGATCCTAAAATTCTAAAGATGACATCAATTACTGCTA
GTGAAATTATATCTTACATATTCAATGAATGTCTTGACAAAGGTGAGTAT
CCTGACTGTCTAAAAAAAGCAAATATTAAGCCTCTCCACAAAAAGAACGC
TAGGACCGAGGTAAGTAATTATAGGCCAATCTCTTTACTAtcaaacataa
ataaaatttttgaaactttattaCATTCCAGGCTTgctgaattttttgaa
aaacaatcagtgattttcaaaaACCAGTTCGGATTTAGAAAGGGGCATAG
TACAACACATGCTATCACAGCACTCACAGAAATTGTCAGAAGCTCACTTG
ACAAAACTGAATTTTCAGCCGCAGTATTTCTTGACCttcaaaaagctttt
gataCTGTTGATCACaatattttattgcaaaaactatgtCATTATGGAGT
AAGAGGAGTTGCTCTAAAGGTTTTTGAATCCTATCTTAAAAACAGATCTC
AATGTGTTGTCATAAATGATGCAAAATCAAACTATCATGAAGTCAAGCAT
GGGGTGCCTCAGGGGTCTGTTCTAGGACCCCTTATGTTCATTATCTACAT
AAATGATTTGCATAATTCAGTTTGTTATTCCACTTCCATTCATTTTGCAG
ATGACACCAGTTTAGTATTCACTGAGAAATCACTGAAAGAACTGAACAGG
ATAGTAAACAGAGATCTTGCTCTACTTGTTCATTGGCTCAGAGCCAATAA
GATAAGTCTCAATACATCAAAAACCGAAATTATTTTATTCAGAACTATCA
gaacaaaaatcacaaaacaTTTAAACTTCAGATTAAGTGGACAGCAAATC
AAACCTTCCCATCATGCTAAATATCTTGGTGTTATAATTGATGAAAATCT
TAACTGGGATACTCATCTGCTCAAACTTTCTCAAAAACTTGCTAGCACTG
TAGGTATACTTTCGAAACTTAGGCATTATGTTGACTACAAGACGCTATTA
TCTGTATACTACTCCCTCTTTGAATCCCATGTCAATTACTGTCTTCCATT
TCTAGGTTTCACTACTCAAGAGCGTTNGAGTTGCTCTAAAGGTTTTTGAA
TCCTATCTTAAAAACAGATCTCAATGTGTTGTCATAAATGATGCAAAATC
AAACTATCATGAAGTCAAGCATGGGGTGCCTCAGGGGTCTGTTCTAGGAC
CCCTTATGTTCATTATCTACATAAATGATTTGCATAATTCAGTTTGTTAT
TCCACTTCCATTCATTTTGCAGATGACACCAGTTTAGTATTCACTGAGAA
ATCACTGAAAGAACTGAACAGGATAGTAAACAGAGATCTTGCTCTACTTG
TTCATTGGCTCAGAGCCAATAAGATAAGTCTCAATACATCAAAAACCGAA
ATTATTTTATTCAGAACTATCAgaacaaaaatcacaaaacaTTTAAACTT
CAGATTAAGTGGACAGCAAATCAAACCTTCCCATCATGCTAAATATCTTG
GTGTTATAATTGATGAAAATCTTAACTGGGATACTCATCTGCTCAAACTT
TCTCAAAAACTTGCTAGCACTGTAGGTATACTTTCGAAACTTAGGCATTA
TGTTGACTACAAGACGCTATTATCTGTATACTACTCCCTCTTTGAATCCC
ATGTCAATTACTGTCTTCCATTTCTAGGTTTTACTACTCAAGAGCGTCTA
AATATAttcgaaaaacttcaaaataaggCTCTTCGTATCATTCACTTCAA
AAACCAAAGGGAATCTGTTTTGCCGCTTTACATCAATTCACGTATTCTCC
CCATTATCAAACAGCGTTCTCTTAAAAATTGTCTATTTGCCTTTGACTTC
TTCAACAAGAAATTACCTGTTTATTTTGATAACTTTCTTAGGAAACTTAG
AGAGGATCAC

Coding sequence (CDS) from alignment at scaffold_200:219312..221371+

>TCONS_00051304 ID=TCONS_00051304|Name=TCONS_00051304|organism=Clytia hemisphaerica|type=CDS|length=2214bp|location=Sequence derived from alignment at scaffold_200:219312..221371+ (Clytia hemisphaerica)
GAAAAAACCAAGGCTAAAATACCTCCAACCAACaagattttcactgattt
tatGGGCAATCCTACTAATGCTTCCATTCATCTTACTCCAACAACTCCAA
TGGCTGTATATAAacttattgaaaaaattgacttGAAAAAGGCGTCTGGC
CCTAACAGTATCGATCCTAAAATTCTAAAGATGACATCAATTACTGCTAG
TGAAATTATATCTTACATATTCAATGAATGTCTTGACAAAGGTGAGTATC
CTGACTGTCTAAAAAAAGCAAATATTAAGCCTCTCCACAAAAAGAACGCT
AGGACCGAGGTAAGTAATTATAGGCCAATCTCTTTACTAtcaaacataaa
taaaatttttgaaactttattaCATTCCAGGCTTgctgaattttttgaaa
aacaatcagtgattttcaaaaACCAGTTCGGATTTAGAAAGGGGCATAGT
ACAACACATGCTATCACAGCACTCACAGAAATTGTCAGAAGCTCACTTGA
CAAAACTGAATTTTCAGCCGCAGTATTTCTTGACCttcaaaaagcttttg
ataCTGTTGATCACaatattttattgcaaaaactatgtCATTATGGAGTA
AGAGGAGTTGCTCTAAAGGTTTTTGAATCCTATCTTAAAAACAGATCTCA
ATGTGTTGTCATAAATGATGCAAAATCAAACTATCATGAAGTCAAGCATG
GGGTGCCTCAGGGGTCTGTTCTAGGACCCCTTATGTTCATTATCTACATA
AATGATTTGCATAATTCAGTTTGTTATTCCACTTCCATTCATTTTGCAGA
TGACACCAGTTTAGTATTCACTGAGAAATCACTGAAAGAACTGAACAGGA
TAGTAAACAGAGATCTTGCTCTACTTGTTCATTGGCTCAGAGCCAATAAG
ATAAGTCTCAATACATCAAAAACCGAAATTATTTTATTCAGAACTATCAg
aacaaaaatcacaaaacaTTTAAACTTCAGATTAAGTGGACAGCAAATCA
AACCTTCCCATCATGCTAAATATCTTGGTGTTATAATTGATGAAAATCTT
AACTGGGATACTCATCTGCTCAAACTTTCTCAAAAACTTGCTAGCACTGA
AACTTAGGAAAAAACCAAGGCTAAAATACCTCCAACCAACaagattttca
ctgattttatGGGCAATCCTACTAATGCTTCCATTCATCTTACTCCAACA
ACTCCAATGGCTGTATATAAacttattgaaaaaattgacttGAAAAAGGC
GTCTGGCCCTAACAGTATCGATCCTAAAATTCTAAAGATGACATCAATTA
CTGCTAGTGAAATTATATCTTACATATTCAATGAATGTCTTGACAAAGGT
GAGTATCCTGACTGTCTAAAAAAAGCAAATATTAAGCCTCTCCACAAAAA
GAACGCTAGGACCGAGGTAAGTAATTATAGGCCAATCTCTTTACTAtcaa
acataaataaaatttttgaaactttattaCATTCCAGGCTTgctgaattt
tttgaaaaacaatcagtgattttcaaaaACCAGTTCGGATTTAGAAAGGG
GCATAGTACAACACATGCTATCACAGCACTCACAGAAATTGTCAGAAGCT
CACTTGACAAAACTGAATTTTCAGCCGCAGTATTTCTTGACCttcaaaaa
gcttttgataCTGTTGATCACaatattttattgcaaaaactatgtCATTA
TGGAGTAAGAGGAGTTGCTCTAAAGGTTTTTGAATCCTATCTTAAAAACA
GATCTCAATGTGTTGTCATAAATGATGCAAAATCAAACTATCATGAAGTC
AAGCATGGGGTGCCTCAGGGGTCTGTTCTAGGACCCCTTATGTTCATTAT
CTACATAAATGATTTGCATAATTCAGTTTGTTATTCCACTTCCATTCATT
TTGCAGATGACACCAGTTTAGTATTCACTGAGAAATCACTGAAAGAACTG
AACAGGATAGTAAACAGAGATCTTGCTCTACTTGTTCATTGGCTCAGAGC
CAATAAGATAAGTCTCAATACATCAAAAACCGAAATTATTTTATTCAGAA
CTATCAgaacaaaaatcacaaaacaTTTAAACTTCAGATTAAGTGGACAG
CAAATCAAACCTTCCCATCATGCTAAATATCTTGGTGTTATAATTGATGA
AAATCTTAACTGGGATACTCATCTGCTCAAACTTTCTCAAAAACTTGCTA
GCACTGAAACTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032511XLOC_032511Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051304-proteinTCONS_00051304-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051304-exon-scaffold_200-1491911889:219312..220410TCONS_00051304-exon-scaffold_200-1491911889:219312..220410Clytia hemisphaericaexon
TCONS_00051304-exon-scaffold_200-1510915933:219312..220410TCONS_00051304-exon-scaffold_200-1510915933:219312..220410Clytia hemisphaericaexon
TCONS_00051304-exon-scaffold_200-1575043694:219312..220410TCONS_00051304-exon-scaffold_200-1575043694:219312..220410Clytia hemisphaericaexon
TCONS_00051304-exon-scaffold_200-1491911889:221353..221371TCONS_00051304-exon-scaffold_200-1491911889:221353..221371Clytia hemisphaericaexon
TCONS_00051304-exon-scaffold_200-1510915933:221353..221371TCONS_00051304-exon-scaffold_200-1510915933:221353..221371Clytia hemisphaericaexon
TCONS_00051304-exon-scaffold_200-1575043694:221353..221371TCONS_00051304-exon-scaffold_200-1575043694:221353..221371Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_200supercontigscaffold_200:219312..221371 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0497201	0.228359	0.135826	0.244295	0.514197	0.398781	0.65232	1.48692	0.480618	0.407388	0	0.523647	0.592596	0.539137	0.989332	1.02067	0.80561	1.2465	0.241621	0.390739	0.953612	1.37648	0.260269	0.227115	0.251425	0.224391	0.428137	0.11423	0.129959	0.0882717
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051304 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top