TCONS_00051305 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051305
Unique NameTCONS_00051305
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1980

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051305 ID=TCONS_00051305|Name=TCONS_00051305|organism=Clytia hemisphaerica|type=transcript|length=1980bp
TTTGTACGTTGTATGTCTGTAGAAAAAAAACCTAATTCCAATTTTTTCTG
AAGCAAATGGCCCAATTTCTACCCCTATGCAATTCTATACAATTGACTTT
GCGCGATGTGGTTTTATACCGCTTTGATGGGCTATGACATTCTGGGCATT
TTTCAGCTATCTAAACGTCTTTCCTGAGCTGGGCCTTCACGCCCTAGAGA
GATTTTAAAGGTCTGAAAAGGAAGCCGCACGTAATGAGGGCTTTTTTCAT
AAGAACCATGTAATTCACGGTTTTTTTATTACAACCCAGTTTATAAGAAC
TTTTAGGCTGAAATTGTCCAAAAAAATAAGAACATCTTAAGAACATGCCC
AGCCTGGAAATCGAGAAGTGAAGTTAGGAAATGATAGCCTTTAATTGCAA
AGCGAATCAAAGGAAATGTTTTTTCACCTGGCAATCAGATTTTCCTACAG
AAAGAATTTTTTTGAATTATAAAAGGTGTAATTCTTTTTTCTTGTGTTAT
TTGATTTCAAACGAAGAACATCAATAAGAACATCTGAGTCTGAAATTTGC
TGAAAAAATAAGCACATCCAGGAACAGCCAAAATTTAGGTGTTCTAATAA
AAAAACGTGTTTTGCACGATGCTCTTATTTTTTGATAGTTTAAAGCTGTA
TTTTGCCTTTTGACCCGAATTTAGCACTATATTTGATTAATACCTAGTCA
TCAGTTGAGTCTGAACAAATTCTAAAACTGTTCTTATTTCTTGGAATTTT
TTCTTATTTCTTGGCCATTTTGAGCTTCATTGTTCTTATAAAATTGTTCT
TATTAAAAAAAGAGTACTTTTAATAGAAACCTTTCGGAGGTCACTTTGTA
GATTCAAATTGCAGATTGGTGACGTAAGAACATGTATTGACTCTTTCATC
TTGTACAGAAATAATTCGCCAAAATATTTAGAATATTTTTCTGTTGTTGG
TACTTTTGTATTTTCCAGTATGCCGAAGAAAATCTTATGTAAATAAATAG
TCTCAGTTGACTAATACATGTGCTCTTTTGAACATCAAAGAACTTTTCGT
AATTTGCCGCTTTCTATGGAGGCTCTACCAAAATCGCCTCAAAATGGTAC
ATCAACTCATTTGCGTCACATTTTCGCGCACGTTTAAGAAGATTTTTGGG
CGTATAAATTTTCCCTCACGTGAAAAGTACTAACCTATTGCAGCATTCAA
TCTATTGCTGTATTGTTAAAACTTGTGTATTTATAAAACTCTCCAGTGTG
ACCAATTGATCGCAACCTGACTACCCAATGCAATTAATTTTTCTACATTC
TTTTTGCATTGACGTCATTAAACTTAAATATTTACGACTTCAAAAGCTAT
AAATTCTATACTAAAATTTTTTGAAAGCACGTTGCACACAGAACACAAAT
GGTTTCTTAACCGGGGGTAGTATAATTTTCTTTCTTATTGTTCAATATAC
ATACTGATTGTGTTAATTGAATAATAAGATAAGCTTTAACCAATGAAAAT
TATCGTTTgatcaaaattaaattatttgaaaccccctgaaaaagaaattg
tattTATTTGTAGGTTTTCAAAGTTGAGGGTCAGTCTtcaattcaatatt
caaaatggcggattatgAAAGTGATGAACAACAGGCTGGAAGTTCAGCAA
GTCAAGAGGTACCTCCAAACAATGGAAACGATACGAATGACCCAAACGAA
TGCTTTGTACATGCAGTTGGACCCATGATCAAACCTTCAACCCCTGGAAA
AAGCGCTTATTTCAATTGTGTATTGCAAATGAGAGAGAAATCTGTTANAA
ACTATTATGCCAACATAATCTTAAAAAGTTATgctgataaaaacatttta
gatttttctagaactcctgaaatgaaattgttggtTTTGGGGTACCTGTG
GGTTTTGTGgtactaccttaagtggataaattttggtgtggatttaattt
ggcgaatgaccaaaatgcaatttttggcgg
Run BLAST on NCBI

protein sequence of TCONS_00051305-protein

>TCONS_00051305-protein ID=TCONS_00051305-protein|Name=TCONS_00051305-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MADYESDEQQAGSSASQEVPPNNGNDTNDPNECFVHAVGPMIKPSTPGKS
AYFNCVLQMREKSVXNYYANIILKSYADKNILDFSRTPEMKLLVLGYLWV
LWYYLKWINFGVDLIWRMTKMQFLA
Run BLAST on NCBI

transcript from alignment at scaffold_200:234906..237217+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051305 ID=TCONS_00051305|Name=TCONS_00051305|organism=Clytia hemisphaerica|type=transcript|length=2312bp|location=Sequence derived from alignment at scaffold_200:234906..237217+ (Clytia hemisphaerica)
TTTGTACGTTGTATGTCTGTAGAAAAAAAACCTAATTCCAATTTTTTCTG
AAGCAAATGGCCCAATTTCTACCCCTATGCAATTCTATACAATTGACTTT
GCGCGATGTGGTTTTATACCGCTTTGATGGGCTATGACATTCTGGGCATT
TTTCAGCTATCTAAACGTCTTTCCTGAGCTGGGCCTTCACGCCCTAGAGA
GATTTTAAAGGTCTGAAAAGGAAGCCGCACGTAATGAGGGCTTTTTTCAT
AAGAACCATGTAATTCACGGTTTTTTTATTACAACCCAGTTTATAAGAAC
TTTTAGGCTGAAATTGTCCAAAAAAATAAGAACATCTTAAGAACATGCCC
AGCCTGGAAATCGAGAAGTGAAGTTAGGAAATGATAGCCTTTAATTGCAA
AGCGAATCAAAGGAAATGTTTTTTCACCTGGCAATCAGATTTTCCTACAG
AAAGAATTTTTTTGAATTATAAAAGGTGTAATTCTTTTTTCTTGTGTTAT
TTGATTTCAAACGAAGAACATCAATAAGAACATCTGAGTCTGAAATTTGC
TGAAAAAATAAGCACATCCAGGAACAGCCAAAATTTAGGTGTTCTAATAA
AAAAACGTGTTTTGCACGATGCTCTTATTTTTTGATAGTTTAAAGCTGTA
TTTTGCCTTTTGACCCGAATTTAGCACTATATTTGATTAATACCTAGTCA
TCAGTTGAGTCTGAACAAATTCTAAAACTGTTCTTATTTCTTGGAATTTT
TTCTTATTTCTTGGCCATTTTGAGCTTCATTGTTCTTATAAAATTGTTCT
TATTAAAAAAAGAGTACTTTTAATAGAAACCTTTCGGAGGTCACTTTGTA
GATTCAAATTGCAGATTGGTGACGTAAGAACATGTATTGACTCTTTCATC
TTGTACAGAAATAATTCGCCAAAATATTTAGAATATTTTTCTGTTGTTGG
TACTTTTGTATTTTCCAGTATGCCGAAGAAAATCTTATGTAAATAAATAG
TCTCAGTTGACTAATACATGTGCTCTTTTGAACATCAAAGAACTTTTCGT
AATTTGCCGCTTTCTATGGAGGCTCTACCAAAATCGCCTCAAAATGGTAC
ATCAACTCATTTGCGTCACATTTTCGCGCACGTTTAAGAAGATTTTTGGG
CGTATAAATTTTCCCTCACGTGAAAAGTACTAACCTATTGCAGCATTCAA
TCTATTGCTGTATTGTTAAAACTTGTGTATTTATAAAACTCTCCAGTGTG
ACCAATTGATCGCAACCTGACTACCCAATGCAATTAATTTTTCTACATTC
TTTTTGCATTGACGTCATTAAACTTAAATATTTACGACTTCAAAAGCTAT
AAATTCTATACTAAAATTTTTTGAAAGCACGTTGCACACAGAACACAAAT
GGTTTCTTAACCGGGGGTAGTATAATTTTCTTTCTTATTGTTCAATATAC
ATACTGATTGTGTTAATTGAATAATAAGATAAGCTTTAACCAATGAAAAT
TATCGTTTgatcaaaattaaattatttgaaaccccctgaaaaagaaattg
tattTATTTGTAGGTTTTCAAAGTTGAGGGTCAGTCTtcaattcaatatt
caaaatggcggattatgAAAGTGATGAACAACAGGCTGGAAGTTCAGCAA
GTAAGTTTATTTGGTTTTTATGTATACAAATATTAAGATGTTAAGGAATA
CACATTCTTTGCCAACAAAGATCTATAAAGTTAAACTTCCGAAAAATATT
TCGATGGAGGAATGCATCGCAATATCTTGACTTTCGAAAATGATTGGGCT
AAAATATTTTGGGGTTTCATGTCACGATGGAAGATGTGTGTCAATAGgcc
aaatttcatattttaatcTGATTGAGACGTCAGGCTTAGAACTAGCGCAT
GATTTGTTTAAACTCCGGCATACAATTTTGAATGGTGTGTTTGATAAAAt
taatttcacatttttttcttccgtTTTTCTAGGTCAAGAGGTACCTCCAA
ACAATGGAAACGATACGAATGACCCAAACGAATGCTTTGTACATGCAGTT
GGACCCATGATCAAACCTTCAACCCCTGGAAAAAGCGCTTATTTCAATTG
TGTATTGCAAATGAGAGAGAAATCTGTTANAAACTATTATGCCAACATAA
TCTTAAAAAGTTATgctgataaaaacattttagatttttctagaactcct
gaaatgaaattgttggtTTTGGGGTACCTGTGGGTTTTGTGgtactacct
taagtggataaattttggtgtggatttaatttggcgaatgaccaaaatgc
aatttttggcgg

Coding sequence (CDS) from alignment at scaffold_200:234906..237217+

>TCONS_00051305 ID=TCONS_00051305|Name=TCONS_00051305|organism=Clytia hemisphaerica|type=CDS|length=750bp|location=Sequence derived from alignment at scaffold_200:234906..237217+ (Clytia hemisphaerica)
atggcggattatgAAAGTGATGAACAACAGGCTGGAAGTTCAGCAAGTCA
AGAGGTACCTCCAAACAATGGAAACGATACGAATGACCCAAACGAATGCT
TTGTACATGCAGTTGGACCCATGATCAAACCTTCAACCCCTGGAAAAAGC
GCTTATTTCAATTGTGTATTGCAAATGAGAGAGAAATCTGTTANAAACTA
TTATGCCAACATAATCTTAAAAAGTTATgctgataaaaacattttagatt
tttctagaactcctgaaatgaaattgttggtTTTGGGGTACCTGTGGGTT
TTGTGgtactaccttaagtggataaattttggtgtggatttaatttggcg
aatgaccaaaatgcaatttttggcgatggcggattatgAAAGTGATGAAC
AACAGGCTGGAAGTTCAGCAAGTCAAGAGGTACCTCCAAACAATGGAAAC
GATACGAATGACCCAAACGAATGCTTTGTACATGCAGTTGGACCCATGAT
CAAACCTTCAACCCCTGGAAAAAGCGCTTATTTCAATTGTGTATTGCAAA
TGAGAGAGAAATCTGTTANAAACTATTATGCCAACATAATCTTAAAAAGT
TATgctgataaaaacattttagatttttctagaactcctgaaatgaaatt
gttggtTTTGGGGTACCTGTGGGTTTTGTGgtactaccttaagtggataa
attttggtgtggatttaatttggcgaatgaccaaaatgcaatttttggcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032512XLOC_032512Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051305-proteinTCONS_00051305-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051305-exon-scaffold_200-1491911889:234906..236555TCONS_00051305-exon-scaffold_200-1491911889:234906..236555Clytia hemisphaericaexon
TCONS_00051305-exon-scaffold_200-1510915933:234906..236555TCONS_00051305-exon-scaffold_200-1510915933:234906..236555Clytia hemisphaericaexon
TCONS_00051305-exon-scaffold_200-1575043694:234906..236555TCONS_00051305-exon-scaffold_200-1575043694:234906..236555Clytia hemisphaericaexon
TCONS_00051305-exon-scaffold_200-1491911889:236888..237217TCONS_00051305-exon-scaffold_200-1491911889:236888..237217Clytia hemisphaericaexon
TCONS_00051305-exon-scaffold_200-1510915933:236888..237217TCONS_00051305-exon-scaffold_200-1510915933:236888..237217Clytia hemisphaericaexon
TCONS_00051305-exon-scaffold_200-1575043694:236888..237217TCONS_00051305-exon-scaffold_200-1575043694:236888..237217Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_200supercontigscaffold_200:234906..237217 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0400652	0.0781398	0.136092	0.0221907	0.243136	0.320215	0.875673	1.47081	4.1612	7.04666	6.37285	8.36519	5.16935	6.36462	1.7404	1.66019	1.26323	1.32559	1.57584	1.49301	1.80129	2.21068	0.658426	1.09949	3.50582	4.75409	1.12622	0.967405	0.546916	0.611646
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051305 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top