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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051307 ID=TCONS_00051307|Name=TCONS_00051307|organism=Clytia hemisphaerica|type=transcript|length=906bp
TTATTAGCGAAAAGAAGATCGAGAAGCAAGCGAATCATTTGACCCAACGA
AGCTACGCGACCCCGAAAACGTTTTTAAGTCGCAGCCACAgatgaatgaa
aatgaagaagtcgTGAAAGAACTGTCCACTACATTCACATATATGAAAGG
AAAATGTGGGCATTCTTTCGCAAGCTTTTTAAAACCACGAATCTTTCATT
TCACCAAAGCTTTCACACCTTTATTTGCTTGGTTCCTTCCGATACTAGCT
GCAACCCTCGAGTTCTGTTTGAATGAGAGAAAGGAGGACGAAGTCGTGGT
ATTATGCGAAGATATATGTCAAGTACAAATGGTCAAGTATACCCTGGAAC
GGATACATAAGCGTCCAATTGCATACGCACCTTACCTTACCGGAGAATAT
CCTCAAGACATCCACAAGATGAAgaaaaaattcgtcaaaaatttggacaa
gaAGGAGACAGTTCTGATATCCGATTATCGGTCTGTTCGTGGATTGGAAA
TGGCCCATACAATCATCTTTGTGGATCCAGAAAACGAGGCCAACGCACAT
TTTCTCATCGAAGCAATCACACGAACCATAACAAATCTTGATGTCATTTC
AACAAAACCTTTTCCACAAAATCCTTCAACGAGTATCgaaagagcttttc
aaaaatatgtcgATTGGACTTTAGCAATCAAGACACACGTTGAATCGAGC
AAAGACGCAGAAGATCTTCTGAAAGTACGATTCCAATACAACGAAAAGGA
CggctcaaaacaaacaaaaatgatttcacAGAAATTGACCGATTTCAGTT
TCGACGTTTCACAATCTCTAaatgattttaacaaaaatgaagAGCTATGG
CAAAACTATTTCAGGATGGCGTTTACTCTTTCAACTTCCATTTCATCTTT
GGGAAC Run BLAST on NCBI protein sequence of TCONS_00051307-protein >TCONS_00051307-protein ID=TCONS_00051307-protein|Name=TCONS_00051307-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
MNENEEVVKELSTTFTYMKGKCGHSFASFLKPRIFHFTKAFTPLFAWFLP
ILAATLEFCLNERKEDEVVVLCEDICQVQMVKYTLERIHKRPIAYAPYLT
GEYPQDIHKMKKKFVKNLDKKETVLISDYRSVRGLEMAHTIIFVDPENEA
NAHFLIEAITRTITNLDVISTKPFPQNPSTSIERAFQKYVDWTLAIKTHV
ESSKDAEDLLKVRFQYNEKDGSKQTKMISQKLTDFSFDVSQSLNDFNKNE
ELWQNYFRMAFTLSTSISSLG Run BLAST on NCBI transcript from alignment at scaffold_200:247465..248544+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051307 ID=TCONS_00051307|Name=TCONS_00051307|organism=Clytia hemisphaerica|type=transcript|length=1080bp|location=Sequence derived from alignment at scaffold_200:247465..248544+ (Clytia hemisphaerica)
TTATTAGCGAAAAGAAGATCGAGAAGCAAGCGAATCATTTGACCCAACGA
AGCTACGCGACCCCGAAAACGTTTTTAAGTCGCAGCCACAgatgaatgaa
aatgaagaagtcgTGAAAGAACTGTCCACTACATTCACATATATGAAAGG
AAAATGTGGGCATTCTTTCGCAAGCTTTTTAAAACCACGAATCTTTCATT
TCACCAAAGCTTTCACACCTTTATTTGCTTGGTTCCTTCCGATACTAGCT
GCAACCCTCGAGTTCTGTTTGAATGAGAGAAAGGAGGACGAAGTCGTGGT
ATTATGCGAAGATATATGTCAAGTACAAATGGTCAAGTATACCCTGGAAC
GGATACATAAGCGTCCAATTGCATACGCACCTTACCTTACCGGAGAATAT
CCTCAAGACATCCACAAGATGAAgaaaaaattcgtcaaaaatttggacaa
gaAGGAGACAGTTCTGATATCCGATTATCGGTCTGTTCGTGGATTGGAAA
TGGCCCATACAATCATCTTTGTGGATCCAGAAAACGAGGCCAACGCACAT
TTTCTCATCGAAGCAATCACACGAACCATAACAAATCTTGATGTCATTTC
AACAAAACCTTTTCCACAAAATCCTTCAACGAGTATCgaaagagcttttc
aaaaatatgtcgATTGGACTTTAGCAATCAAGACACACGTTGAATCGAGC
AAAGACGCAGAAGATCTTCTGAAAGTACGATTCCAATACAACGAAAAGGA
CggctcaaaacaaacaaaaatgatttcacAGAAATTGACCGATTTCAGTT
TCGACGTTTCACAATCTCTAaatgattttaacaaaaatgaagAGCTATGG
CAAAACTATTTCAGGTATAatttttctgttgaaattttcaagttttaacg
ATCTTTATTTTATTGCAGAAAGCTCAATGAGAAGATATAAGTCATATTTT
CCAAACTTAGGTGCCTTTAACCATTAGTTAGATTAgtcctttaaccaaat
aaattccagacaaaaaaaacataattcttTTCCTTCAGGATGGCGTTTAC
TCTTTCAACTTCCATTTCATCTTTGGGAAC Coding sequence (CDS) from alignment at scaffold_200:247465..248544+ >TCONS_00051307 ID=TCONS_00051307|Name=TCONS_00051307|organism=Clytia hemisphaerica|type=CDS|length=1626bp|location=Sequence derived from alignment at scaffold_200:247465..248544+ (Clytia hemisphaerica)
atgaatgaaaatgaagaagtcgTGAAAGAACTGTCCACTACATTCACATA
TATGAAAGGAAAATGTGGGCATTCTTTCGCAAGCTTTTTAAAACCACGAA
TCTTTCATTTCACCAAAGCTTTCACACCTTTATTTGCTTGGTTCCTTCCG
ATACTAGCTGCAACCCTCGAGTTCTGTTTGAATGAGAGAAAGGAGGACGA
AGTCGTGGTATTATGCGAAGATATATGTCAAGTACAAATGGTCAAGTATA
CCCTGGAACGGATACATAAGCGTCCAATTGCATACGCACCTTACCTTACC
GGAGAATATCCTCAAGACATCCACAAGATGAAgaaaaaattcgtcaaaaa
tttggacaagaAGGAGACAGTTCTGATATCCGATTATCGGTCTGTTCGTG
GATTGGAAATGGCCCATACAATCATCTTTGTGGATCCAGAAAACGAGGCC
AACGCACATTTTCTCATCGAAGCAATCACACGAACCATAACAAATCTTGA
TGTCATTTCAACAAAACCTTTTCCACAAAATCCTTCAACGAGTATCgaaa
gagcttttcaaaaatatgtcgATTGGACTTTAGCAATCAAGACACACGTT
GAATCGAGCAAAGACGCAGAAGATCTTCTGAAAGTACGATTCCAATACAA
CGAAAAGGACggctcaaaacaaacaaaaatgatttcacAGAAATTGACCG
ATTTCAGTTTCGACGTTTCACAATCTCTAaatgattttaacaaaaatgaa
gAGCTATGGCAAAACTATTTCAGGATGGCGTTTACTCTTTCAACTTCCAT
TTCATCTTTGGGAatgaatgaaaatgaagaagtcgTGAAAGAACTGTCCA
CTACATTCACATATATGAAAGGAAAATGTGGGCATTCTTTCGCAAGCTTT
TTAAAACCACGAATCTTTCATTTCACCAAAGCTTTCACACCTTTATTTGC
TTGGTTCCTTCCGATACTAGCTGCAACCCTCGAGTTCTGTTTGAATGAGA
GAAAGGAGGACGAAGTCGTGGTATTATGCGAAGATATATGTCAAGTACAA
ATGGTCAAGTATACCCTGGAACGGATACATAAGCGTCCAATTGCATACGC
ACCTTACCTTACCGGAGAATATCCTCAAGACATCCACAAGATGAAgaaaa
aattcgtcaaaaatttggacaagaAGGAGACAGTTCTGATATCCGATTAT
CGGTCTGTTCGTGGATTGGAAATGGCCCATACAATCATCTTTGTGGATCC
AGAAAACGAGGCCAACGCACATTTTCTCATCGAAGCAATCACACGAACCA
TAACAAATCTTGATGTCATTTCAACAAAACCTTTTCCACAAAATCCTTCA
ACGAGTATCgaaagagcttttcaaaaatatgtcgATTGGACTTTAGCAAT
CAAGACACACGTTGAATCGAGCAAAGACGCAGAAGATCTTCTGAAAGTAC
GATTCCAATACAACGAAAAGGACggctcaaaacaaacaaaaatgatttca
cAGAAATTGACCGATTTCAGTTTCGACGTTTCACAATCTCTAaatgattt
taacaaaaatgaagAGCTATGGCAAAACTATTTCAGGATGGCGTTTACTC
TTTCAACTTCCATTTCATCTTTGGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051307-exon-scaffold_200-1491911889:247465..248328 | TCONS_00051307-exon-scaffold_200-1491911889:247465..248328 | Clytia hemisphaerica | exon |
| TCONS_00051307-exon-scaffold_200-1510915933:247465..248328 | TCONS_00051307-exon-scaffold_200-1510915933:247465..248328 | Clytia hemisphaerica | exon |
| TCONS_00051307-exon-scaffold_200-1575043694:247465..248328 | TCONS_00051307-exon-scaffold_200-1575043694:247465..248328 | Clytia hemisphaerica | exon |
| TCONS_00051307-exon-scaffold_200-1491911889:248503..248544 | TCONS_00051307-exon-scaffold_200-1491911889:248503..248544 | Clytia hemisphaerica | exon |
| TCONS_00051307-exon-scaffold_200-1510915933:248503..248544 | TCONS_00051307-exon-scaffold_200-1510915933:248503..248544 | Clytia hemisphaerica | exon |
| TCONS_00051307-exon-scaffold_200-1575043694:248503..248544 | TCONS_00051307-exon-scaffold_200-1575043694:248503..248544 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_200 | supercontig | scaffold_200:247465..248544 + |
Blast
The following BLAST results are available for this feature:
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