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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051308 ID=TCONS_00051308|Name=TCONS_00051308|organism=Clytia hemisphaerica|type=transcript|length=1194bpRun BLAST on NCBI protein sequence of TCONS_00051308-protein >TCONS_00051308-protein ID=TCONS_00051308-protein|Name=TCONS_00051308-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp MADERIELHFIILSQDAGGIIGREGRNIRQMRDESGANINITAGTGVERIRun BLAST on NCBI transcript from alignment at scaffold_200:16..68116- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051308 ID=TCONS_00051308|Name=TCONS_00051308|organism=Clytia hemisphaerica|type=transcript|length=68101bp|location=Sequence derived from alignment at scaffold_200:16..68116- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_200:16..68116- >TCONS_00051308 ID=TCONS_00051308|Name=TCONS_00051308|organism=Clytia hemisphaerica|type=CDS|length=3768bp|location=Sequence derived from alignment at scaffold_200:16..68116- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00051308 vs. Swiss-Prot (Human)
Match: PCBP2 (Poly(rC)-binding protein 2 OS=Homo sapiens GN=PCBP2 PE=1 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 3.163e-30 Identity = 64/131 (48.85%), Postives = 88/131 (67.18%), Query Frame = 2
Query: 809 QMRDESGANINITAGTGVERILNIKGNSEQVKSAVQMTAEKLQEIAS----NGNSDSVPPVTMRLLVPNSQCGPLIGKGGQRIKEIREASGATITIPSETLPGSSERSVTLAGSPQSLGTCVSKIYEVFEE 1189
+MR+ESGA INI+ G ERI+ + G + + A M +KL+E S N + S PPVT+RL+VP SQCG LIGKGG +IKEIRE++GA + + + LP S+ER++T+AG PQS+ CV +I V E
Sbjct: 38 KMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE 168 The following BLAST results are available for this feature:
BLAST of TCONS_00051308 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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