TCONS_00051310 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051310
Unique NameTCONS_00051310
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1127

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051310 ID=TCONS_00051310|Name=TCONS_00051310|organism=Clytia hemisphaerica|type=transcript|length=1127bp
tttcaagttcaaaatcgCCAAGTGGCCTGAGAAGTAAGTTCAGGCAATAC
AGTGAGTGGGTGATGTGAGTGTGGGGGTCGTCTTCCTGGctggtttttct
atttttaggtTATCCCCCCTCCTTCCAGAAAAGGGTTTGAATTATGCTGT
GAGTAAGTAAGTTAGTTAACATACCTGAAAGTTGTCAAACTGAAGCTGTA
TCTCTCTCCCATCTTTTAACACTACTGAAAAGTGtttatgataaaatttt
gattgtGTTTTTTGGAAGAGTGCAGGTTTTTTTAATAAACTCCTGACTCC
CGCTTTCAATTTCGCTTATTCATGCGATCACCTGAGTGTACATTGAATTT
ACCAATCAACGACCCGCGCGGTagctttttcgaaaatcttcgAAACAGGT
TAGCCCGTCTACCATGATAAGAAAGACAAACTTTTTATTCTAGAGAAATG
GAATGTCGAAGTGGTCAGTCTTACCAAAGAATAACAAAGAAGGAGAACAG
GGCGATGGAATTTCTCAGCATGACCACGGCTACATTATTTGAAGGATTTC
ACATCTTTGCACGTTTCATCGTTCTTTCGTTTCAAGCCAACAAGAACTCA
AGATGGGTCGTATGCACGCTAAGGGaaaaggTATCTCTGGATCCGCACTT
CCATACCGAAGAAGTGTACCCACTtGGTTGAAATTGACATCTGAAGATGT
CAAAGAACAAATCTACAAGTTGGCTAAAAAGGGTCTGACCCCATCCCAAA
TTGGTGTTATCCTTCGTGATTCTCATGGTGTTGCGCAAGTCAGATATGTT
ACTGGAAATAAAATTCTTCGTATCTTGAAGACTAAAGGATTGGCTCCATC
ATTGCCAGAAGACTTATACTGTTTGATCAAGAAAGCTGTCTCTGTCCGAA
AACATCTTGAGAGAAATAGAAAGGATCGTGACTCAAAATTCAGACTTATT
CTGATTGAAGCTAGAATCCACAGATTGGCAAGATACTACAAAACCAAAAG
AGTCTTACCTCCAAACTGGAAATAcGAATCATCAACTGCATCCGCCCTTG
TAGCATAATTGAAACAAATACAgtactgaaaaataaaattattagtTTCT
GTTGTGTACAGCTCTCCTTTCTCTCCC
Run BLAST on NCBI

transcript from alignment at scaffold_200:25779..31051-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051310 ID=TCONS_00051310|Name=TCONS_00051310|organism=Clytia hemisphaerica|type=transcript|length=5273bp|location=Sequence derived from alignment at scaffold_200:25779..31051- (Clytia hemisphaerica)
TTTCAAGTTCAAAATCGCCAAGTGGCCTGAGAAGTAAGTTCAGGCAATAC
AGTGAGTGGGTGATGTGAGTGTGGGGGTCGTCTTCCTGGCTGGTTTTTCT
ATTTTTAGGTTATCCCCCCTCCTTCCAGAAAAGGGTTTGAATTATGCTGT
GAGTAAGTAAGTTAGTTAACATACCTGAAAGTTGTCAAACTGAAGCTGTA
TCTCTCTCCCATCTTTTAACACTACTGAAAAGTGTTTATGATAAAATTTT
GATTGTGTTTTTTGGAAGAGTGCAGGTTTTTTTAATAAACTCCTGACTCC
CGCTTTCAATTTCGCTTATTCATGCGATCACCTGAGTGTACATTGAATTT
ACCAATCAACGACCCGCGCGGTAGCTTTTTCGAAAATCTTCGAAACAGGT
TAGCCCGTCTACCATGATAAGAAAGACAAACTTTTTATTCTAGAGAAATG
GAATGTCGAAGTGGTCAGTCTTACCAAAGAATAACAAAGAAGGAGAACAG
GGCGATGGAATTTCTCAGCATGACCACGGCTACATTATTTGAAGGATTTC
ACATCTTTGCACGTTTCATCGTTCTTTCGTTTCAAGCCAACAAGAACTCA
AGATGGGTCGTATGCACGCTAAGGGGTAAGTAAAAATGTCTTTCATACCT
ATCAGCGAGCCGTTCAGTATTTTTGTAAACTTTTCCCTGATTAGAAAATC
ATTTTTTGGTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNCATAATTCTAAAACATACCAATTTTATAA
GATTTTGTAAGATGCAGACCTATGTAGTATGGTACAAAATCGAAATTTAA
TTATTGTTGCGGAGCAATCCTACACCTTTTGGTTATTTCAGAATTTTGGA
ACAAAAGTAATTAAAGATAAATTGTTTTGTCCATTTAAAAAAGACTGAGA
AATGATAATATTTGAATCTGTTTGAATCCAGATCAAGAAATTTAGAAAAA
TGTTTTACAGCTTTTTACACCATGTTTGTTTACAAGATTTTCCTGTTAAT
TCATTTAGCCTTGCTTAATTGCAGACAATGAAATAAACCAGGCTAAGCAG
TGCAGGAGATTCTTAAGAAATCTTTTTTCGATCCAGCAGAAATGCTGAAA
TTCTAATTCTGTGAATAATGATTCTTCCGACCATCTTGAGGGATTCTTCT
GTTTGTTCATGAAAAAAATTTGCATATCAGCGCTGGTGTAAATAAAAATG
AAAAACAAACTTTTTATCTACAAAGGTTTTGTTTTGATTTTTGATTGAAA
GATCCAACGATGCTGAGTTGGCAATATTTCCGAAACTCATGTGTACTAGA
GTATGCGTATTTAAAAACAAGTGTGACAAGATTAAAAAAACTAATACCCC
AAATAGACAACTAGATAAAAGTATAATCAAGCTCTACAATCTTCTTTTTT
ATAGAAAAGGTATCTCTGGATCCGCACTTCCATACCGAAGAAGTGTACCC
ACTGTAAGTTCACTTTTACAGAAAATCTTCAGNTTCTTTTTTATAGAAAA
GGTATCTCTGGATCCGCACTTCCATACCGAAGAAGTGTACCCACTGTAAG
TTCACTTTTACAGAAAATCTTCAGCCCTGTGCTACTTTCAAAAGATCTGT
CCTGGAGAATTATTCAAATTAAAATTGAATGTTAAAATTTTTAATTAAAA
AGATGTATAGNGTACCCACTGTAAGTTCACTTTTACAGAAAATCTTCAGA
CCTGTGCTACTTTCAAAAGATCTGTCCTGGAGAATTATTCAAATTAAAAT
TGAATGTTAAAATTTTTAATTAAAAAGATGTATACTGTGGCGTTTATTTA
TTGACATTTATTCTTTTCTTTTAGTGGTTGAAATTGACATCTGAAGATGT
CAAAGAACAAATCTACAAGTTGGCTAAAAAGGGTCTGACCCCATCCCAAA
TTGGTATATACTTTGCAACTTAAACATGAAATCATATCTGTGTTTAATAT
TATCCTAAAATAACAAAATTACAAAATCAAATTTTTTAAAGTTGTAACAC
GAGTTCTAAAGATCTATAGGAATTTTAAACTTCAAAAAAGATTTAAAAAT
TCAATTCTAACAACTTCTGTTTACCTAGGTGTTATCCTTCGTGATTCTCA
TGGTGTTGCGCAAGTCAGATANTTCAAAAAAGATTTAAAAATTCAATTCT
AACAACTTCTGTTTACCTAGGTGTTATCCTTCGTGATTCTCATGGTGTTG
CGCAAGTCAGATATGTTACTGGAAATAAAATTCTTCGTATCTTGAAGACT
AAAGGATTGGCTCCATCATTGCCAGAAGACTTATACTGTTTGATCAAGAA
AGCTGTCTCTGTCCGAAAACATCTTGAGAGAAATAGAAAGGTATATACAA
CAATGTCACTTTTGCTTAACAGAAGATTTAAAAAAAATCTTGCCATTTTT
GGCAAACAATGAAGGCTGTCATACTAAACTGTCAATTCTTTATTGCCTAA
TATTATGTTCTATGTTTCAAAGTTTTACTTTTGAGATTTCCAGACAAGAC
AATTAGCTTCCTGCACTTTTAAACAACATAGCTTCAATCAGGGCATTCTC
ATTTAATTTCATTCTTATTTTCAGGATCGTGACTCAAAATTCAGACTTAT
TCTGATTGAAGCTAGAATCCACAGATTGGCAAGATACTACAAAACCAAAA
GAGTCTTACCTCCAAACTGGAAATAGTGAGTCGTTTTCAATCTTTTCTAC
CCCAGTGACCATTCTCTAAAACTAACTACCTTATTACCGTAATACTTGGA
ATAAANAACTGGAAATAGTGAGTCGTTTTCAATCTTTTCTACCCCAGTGA
CCATTCTCTAAAACTAACTACCTTATTACCGTAATACTTGGAATAAATGC
CCCCTTCTTTTAAACGCCCCTCCTAAAAGGAAAATTATTAAATAAACGCC
CCCTCAAATAAACAAGAGTCTTCGGGGTGTGATACCTCGCCCTCTTCGAT
TTTGCTGAAATCTTCTGGACAACAAGCACTAAAATCCTGATAAAGAACCA
AAACAAAGGGTATATTTGCTCTAAATATTCGACATTCGAAGTAATACGGA
CACGAATATTACTACAAGTATTCAACGGCCTATTAATACGAAATTTTTCA
ATTCGTGTTATTAAAATGACTCGTAACATTCGTGTAATAAGGTAAGTATT
TTCCACTTAGATGAAGGTCGGATCCTATCTTAGGTACTCATTATTTAAAA
AAGTGGATGCTTCATTTTTGCTCCATTAATAATATGAATAGTTTTTAATG
GTATTTTTTTTACTTTTCAGCGAATCATCAACTGCATCCGCCCTTGTAGC
ATAATTGAAACAAATACAGTACTGAAAAATAAAATTATTAGTTTCTGTTG
TGTACAGCTCTCCTTTCTCTCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032516XLOC_032516Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051310-exon-scaffold_200-1575043694:30427..31051TCONS_00051310-exon-scaffold_200-1575043694:30427..31051Clytia hemisphaericaexon
TCONS_00051310-exon-scaffold_200-1575043694:27607..27655TCONS_00051310-exon-scaffold_200-1575043694:27607..27655Clytia hemisphaericaexon
TCONS_00051310-exon-scaffold_200-1575043694:27249..27327TCONS_00051310-exon-scaffold_200-1575043694:27249..27327Clytia hemisphaericaexon
TCONS_00051310-exon-scaffold_200-1575043694:26812..26981TCONS_00051310-exon-scaffold_200-1575043694:26812..26981Clytia hemisphaericaexon
TCONS_00051310-exon-scaffold_200-1575043694:26477..26577TCONS_00051310-exon-scaffold_200-1575043694:26477..26577Clytia hemisphaericaexon
TCONS_00051310-exon-scaffold_200-1575043694:25779..25881TCONS_00051310-exon-scaffold_200-1575043694:25779..25881Clytia hemisphaericaexon
TCONS_00051310-exon-scaffold_200-1510915933:30427..31051TCONS_00051310-exon-scaffold_200-1510915933:30427..31051Clytia hemisphaericaexon
TCONS_00051310-exon-scaffold_200-1510915933:27607..27655TCONS_00051310-exon-scaffold_200-1510915933:27607..27655Clytia hemisphaericaexon
TCONS_00051310-exon-scaffold_200-1510915933:27249..27327TCONS_00051310-exon-scaffold_200-1510915933:27249..27327Clytia hemisphaericaexon
TCONS_00051310-exon-scaffold_200-1510915933:26812..26981TCONS_00051310-exon-scaffold_200-1510915933:26812..26981Clytia hemisphaericaexon
TCONS_00051310-exon-scaffold_200-1510915933:26477..26577TCONS_00051310-exon-scaffold_200-1510915933:26477..26577Clytia hemisphaericaexon
TCONS_00051310-exon-scaffold_200-1510915933:25779..25881TCONS_00051310-exon-scaffold_200-1510915933:25779..25881Clytia hemisphaericaexon
TCONS_00051310-exon-scaffold_200-1491911889:30427..31051TCONS_00051310-exon-scaffold_200-1491911889:30427..31051Clytia hemisphaericaexon
TCONS_00051310-exon-scaffold_200-1491911889:27607..27655TCONS_00051310-exon-scaffold_200-1491911889:27607..27655Clytia hemisphaericaexon
TCONS_00051310-exon-scaffold_200-1491911889:27249..27327TCONS_00051310-exon-scaffold_200-1491911889:27249..27327Clytia hemisphaericaexon
TCONS_00051310-exon-scaffold_200-1491911889:26812..26981TCONS_00051310-exon-scaffold_200-1491911889:26812..26981Clytia hemisphaericaexon
TCONS_00051310-exon-scaffold_200-1491911889:26477..26577TCONS_00051310-exon-scaffold_200-1491911889:26477..26577Clytia hemisphaericaexon
TCONS_00051310-exon-scaffold_200-1491911889:25779..25881TCONS_00051310-exon-scaffold_200-1491911889:25779..25881Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_200supercontigscaffold_200:25779..31051 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.89581	1.63998	2.29547	3.70124	10.4362	6.70895	5.76665	5.94446	3.28921	6.07535	4.05241	6.7091	6.69103	6.76306	7.39208	8.4007	6.80519	7.40919	4.20486	5.46463	7.39967	9.00443	15.1508	12.7979	5.68778	8.69662	3.28406	5.73238	8.52745	14.9749
Blast
[Close]
BLAST of TCONS_00051310 vs. Swiss-Prot (Human)
Match: RS13 (40S ribosomal protein S13 OS=Homo sapiens GN=RPS13 PE=1 SV=2)

HSP 1 Score: 284.263 bits (726), Expect = 3.969e-95
Identity = 139/151 (92.05%), Postives = 147/151 (97.35%), Query Frame = 3 
Query:  603 MGRMHAKGKGISGSALPYRRSVPTWLKLTSEDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRYVTGNKILRILKTKGLAPSLPEDLYCLIKKAVSVRKHLERNRKDRDSKFRLILIEARIHRLARYYKTKRVLPPNWKYESSTASALVA 1055
            MGRMHA GKG+S SALPYRRSVPTWLKLTS+DVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVR+VTGNKILRILK+KGLAP LPEDLY LIKKAV+VRKHLERNRKD+D+KFRLILIE+RIHRLARYYKTKRVLPPNWKYESSTASALVA
Sbjct:    1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151
The following BLAST results are available for this feature:
BLAST of TCONS_00051310 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS133.969e-9592.0540S ribosomal protein S13 OS=Homo sapiens GN=RPS13... [more]
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