TCONS_00051311 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051311
Unique NameTCONS_00051311
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1879

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051311 ID=TCONS_00051311|Name=TCONS_00051311|organism=Clytia hemisphaerica|type=transcript|length=1879bp
CCTGATTCGACAAGTAgaagttttacgctcgaaatgAAAGAAGATGTGCC
TAAGCTAGTCTTAGTTTCTTTCTGACAACGGAAACTCGTAAAGGAATGGT
ggaaaatcataacaacaatgCTCATATTCTCATTCATTCTTTCAGTTTCC
AGCACGTCAAAACAATGTTCAATATTTCCCACATATGTATGGACGTTCAA
TGGGCCCCACTCAGgTATCGGTTATGTCGGGTCAATTATCTCTGCAAGGC
CTATCAAGACGCAGTGAACAAAGAGTTCGACTTCCAAGCAACGTTATCGG
TTCTTTAATCGGAAAAGGTGGCTGTCATATAAACGAAATCAGACAATTTT
CTGGTGCAACAGTACAAATTGAGGAGAACAAAAAGGATAGTCGAATGTCA
GATGTTGTGATCGCTGGAACACCAGAAGCTGTCAGTTGTGCAACCTTCCT
CATCAATGCAAGAATATCAGCTGGGCGTAACGCCATCAAGAATCGTCGCC
AGGGTGGTCAGGGTGGCCAGGGTGGTGCTAACAACGGTGGCGGCAGTGGT
GACGAAAGGCGTGGTCGACGAAACGATCGAAACGATTATAATCGCGAATA
AGAAACGCCCTCTCTTTTCGCCCCCTTTACCCCTTTACTAAATGAACTTT
TTCTAGCATGTTATGATGTCAAGATCAAGCATGTGCTTTTATTCCCCCCT
TTTAGCAATTTTATCtagtttttaaatattcttttcgttttcttttttca
tgACTGACTGCTTGTTGCATTCTcatagttttcaattttttttaaattat
ttcgtAGAACTTATGACGAAGCGATATTTATGTGGGACATATACACTAAG
AAAAATCTACTGTGACTTTTTGGGTGATTTAACGGTGAAAAGCTACAGTG
TTGGAAATTTTCAGCTTTTCACCTTGTTTTCATCCAAAATGCCACGGTga
atctttttgatttctttctgtGATACCACCACTTACCacgcatttcaaaa
aatctcattCTCTCTCAAAAACGAAGAAAGATTTctgttaatttgatttt
tatcaaaaatatttttttctgtttcgTTTATTATGATCATAATTTATTAT
AATGTATAGATATTGATTTTGTTcgttttttagtattttatgttttagga
ttttagttttaaaaaggATGACAAGTTCGTTTATGAAATAGCAAGGCTTT
ATGACTGCCTTCCAGTTCATTTAGTTTCTATGTATGTGTAGCATTGTGTT
TGTGTTGTTTTATGTacgcattttgaattttaggcGGAATTCCTATTTTT
CGTCCTGTTATTTACTCGTTCGTTATTTACAATatatgttttgttgtttt
ttgtttgtgtttttattgttttcactcaaatttttcagaaagtcTTATTC
GTTCACGGTATTTGAATCGTTGTTCTCTGCAATCTTTTCTGCTCCACCCT
CTGAGTTTCTTCTTTAATGGGTTTATACTTCTGAGCCTCTTTAAACGCCC
ATTTACAGCGCCACTTATTTGTGGGCTACGCCCTTTCTGATCCCCTCCTT
TTTGCATTGTTGTTAATTGCCGCATCATCTAAGTTAATTTTAGGAAGATT
ATTTCACTATCAGATATTATAATGGAAATATATTTGGAAATAAAAAGAGC
TGTAAAATATAATGTTTCTatgttttttaattatttttagtcCTTGCCTA
TACGTTGATGACACAGCGACTTAGGGTTGGATAGGTTCCTGGTTTCCAGC
ATTAGTTCTCGCTAAGATTGAAGATTGCGCCAAAATGAGTACTTCgtcaa
aattatgtttttcatgatttacATATCCTGTCAGTCACCAAAATTTGCTC
TCGtgaagattaaaaaaattgatgcCTCG
Run BLAST on NCBI

protein sequence of TCONS_00051311-protein

>TCONS_00051311-protein ID=TCONS_00051311-protein|Name=TCONS_00051311-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
MYGRSMGPTQVSVMSGQLSLQGLSRRSEQRVRLPSNVIGSLIGKGGCHIN
EIRQFSGATVQIEENKKDSRMSDVVIAGTPEAVSCATFLINARISAGRNA
IKNRRQGGQGGQGGANNGGGSGDERRGRRNDRNDYNRE
Run BLAST on NCBI

transcript from alignment at scaffold_200:49442..54636-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051311 ID=TCONS_00051311|Name=TCONS_00051311|organism=Clytia hemisphaerica|type=transcript|length=5195bp|location=Sequence derived from alignment at scaffold_200:49442..54636- (Clytia hemisphaerica)
CCTGATTCGACAAGTAGAAGTTTTACGCTCGAAATGAAAGAAGATGTGCC TAAGCTAGTCTTAGTTTCTTTCTGACAACGGAAACTCGTAAAGGAATGGT GGAAAATCATAACAACAATGCTCATATTCTCATTCATTCTTTCAGTTTCC AGCACGTCAAAACAATGTTCAATATTTCCCACATATGTATGGACGTTCAA TGGGCCCCACTCAGGTAATCAATTTACTGACCATTCCTTAAACTAAATGT AAGCCTTAAAGAATTTAGGTTATCAGACTATTTTAAGAATTTAAAGGGCT AACAAGCTATTTTTCATATGCAGATAATGTTTTAGGGAAGGTAATCACTA GGGTTAGTCTCAGATCTTCACTTCCTTAACTATTAATTTTTTTCCTTTTC TTTTTCTAGGTATCGGTTATGTCGGGTCAATTATCTCTGCAAGGTATGAT TAAAAACCTACACAATCTTTTTAATGCGTTATTCCAGAAAAAATTATAAC ACCCTAATCCCCATATGAAGAGACCTAGAAACTTTGCAGACGTCATCTGG ACTTCCTGATTCTCCATAGACTTTTACTAAAATTTCAGTGAACCTCGTAG ATTTTTCGTAAAATCCCATATGGTCTTAACTGTGCTCGTTGATTGTAATG AAACTTCATTCTACGTTGTTTTTCGTTCTTCTCTACAGGCCTATCAAGAC GCAGTGAACAAAGAGTTCGACTTCCAAGCAACGTATGTAATTTTCTTTCG TCTTTTTGTATTATCTTTGGTATGAAATAGTTGTATCTAATCGAAGCAAA TCACCTTATTTGCTAGAGCTTTTCGAATTTATAAACTAAATCTCGTCCAC ACTAGAACGGCTACTTTTACCAGTCGGAAACAAAATAGCTTCTGAAATAA AATGCTTTGACCTTTTCTGTAAATTCCTAAGTTTCATTTAGCTTACCTTA ATAATAAATTTTTGAAAACTTTCATGAAAATCTTCATGTTTTTTATATCT TGAGCATGATGACTTTTAGACAACAAGGTTTCATAAAAATAAGGATTTCA TCCTAATTTAATAGAATTTTTGATAAAAAAGCCTTTTTAAACTTAGTGAA TTTGCGGGTTACGGTCGTCGGATGGGTCGAATTTGTACGCTTGATTTGTA GAAAATGGAAGGAAAGAAGTAGCGAGGAGTAAAGTGTGGTTAAGGGCTAG GACTGACGTCATTTTTTTCCAACAGAATAGCTTCATATTGTTTTGAAAAG ATATGGAACTGCAACGTTTTAATTGAATGAAGGGAATTTTAGTGAATTAA ATTTTAACATACCTCAGAAGTAATCACTTGAGAAGTAAATAGAGGGGCCA TCAAGTGCTCAATGATACTTCGCTGAAATGTAATCGTTCTGGACTTGTGC CAAATAACATCACAAAGTTGACACATTAAAAAGCCACTTCAAAAAAAAGT CAACTAAGCACTTTCAGCTGTCAAATTCNGAAAAACCACTTCAAAAAAAA AGTCAACTAAGCACTTTCAGCTGTCAAATTCAATTAATGAACTTCTACCC CACCGTGACCCCTCTCATGTTTTTTCGTCTCATTTTTTTTTAAGCTAGGA TAATTAATACCCATAAACCATTGTAAGGTGATCCCAACCACGATTAATAA CATCTTTTTAAAAGCACAACGCTTGTACGCATATCCAGACTCAAATCTTT GAAAAAAAAGCATTTCCTATACATATGCTGAGCCTCAGTTTAGAAAAATT ACACAAAGTGTAGGTGAACAAGTATATTGATCAAAATGCAAAAAAAGTAT ATTGTATTTCTCTTTTTCAGGTTATCGGTTCTTTAATCGGAAAAGGTGGC TGTCATATAAACGAAATCAGGTACTTCTTATTCTAAAGTAGATCAGCTGA AAAGACATTTTGGAACTCCATTTTCGTCTTCAAATACACCTTTTCGTTTC GACCGTAGCGGGCATTTTTTTGTCCGCTTTATCCCACTAAAACCGTCCCA GTCCTTTTTTTGCACCTATAGACAATAGAGAAATGACTCAAAAAAGGATT GGATCGAGTTTAGGGGGATAATTAAAATAATTAAGTGGCACGCGCCTGAC CGAGCGACTACGGTCGAAAAGGTGTATTGAACGCAAAGATATCATGATGC CCAATCGGATTAAATTTAAAAGATTTCTCACCATTAAAAAAATTTCTCAC CTTTAAAAAGAATTTTTGGAACAATCACTCTGCCACTAGTAAATTTGGAA TTTTACCAGGAATTCTTTAACCTATATACAAAGCTGCATTGTGCTTATCA GATTTCAAACGAATCAAATGTTATGACATTATTGATGAAACAAATTTAAT GTTCATTTTCATGGTCATTTTTATACAATTGATTGATTATTGTTGACCCT AAAATGTTTGTATTATAATATAATGTCCTATTCCTCTTTCATTCTGTAGA CAATTTTCTGGTGCAACAGTACAAATTGAGGAGAACAAAAAGGATAGTCG AATGTCAGATGTTGTGATCGCTGGAACACCAGAAGCTGTCAGTTGTGCAA CCTTCCTCATCAATGCAAGGTACAAAACAACCCATTTTAATCTCTTATTT CCCAGTTTTTGATATACATTATCCCTTTTGACGCCAGCCTTTATTGGCGT AATAAAGGCCGGCGTAAAGATTGGAATTAAGTCAGGGCCGGGCTAAAACT GGTAAAAAATGAGCTTTGGTGTAGTATTTTAGGCCGGTGCTAAATTAAGG GCTCTGACCTGAATTTTTAATATTTGCTATTTACGAAATATAAAGTTCTA CTTGATGTAGCCCACAAAACTGTGACATGTTATACATTTTTTGTTAGGCC AATTATCCTTGAGTCAGAAAATTTAAGAATCACAATGAAAAAAATTTGAT GAAGAAGAAAATGAAAACTTTTGCAAAGAAGAGTATTTCAACTTTGAAGA GCTTATTTTCGGTGAAGAAAAAACATTTTGAATTTTTTTTGCGGTAGATG GTGTATCTTTTATCGAACTAAAATATTTTTCTGAAAGCTTATTTGATTCA AAATCTTGAAAATAGTGCTTTTTGACCAATTTTCCATCCCGATTTTTCAT AGAAAAGCAGCCATAACGTTTGATGCATTAATTTAGAAAACTTTTCCGAA AAATTTAAAACAGTTCAATTCTTTGCGGACAGTTTAAAAGAATTCGTAAC AAAAAGGCTAATTACCCATTAAAACTTAGCACTTTTTATAAAAGAAGGCG ATGCAACATATTATTAACGTCTTTTTAAAGTTCATAACGTCATTTTTGTA NGGTGATGCAACATATAATTAACGTCTTTTTAAAGTTCACAACGTCATTT TTGTAATTAAATTCTTACTTAGGGATTTGATTAAAAAGCAATTTATAAAG GCAATTCTTTGTTAAAAGTGTTAAAGAACCTAAAACATAACTTTTATATT CAAATACTAAAATCAATTTTCCGACTATGGTCAGAGCCATTAAAGCTGGT GTGAAAAGGGCCGATAAGGTAGTTATATGTAGCTTGCACAAGAAATTAGT TACCACAGGAAAGAAATCTCAAATTGAACCCTCAGGTCTCCTGTTGGATC TAATAAGTATTGGGGGAATGTGGAAAACACATTAAACATAAGGGAAATAA GAAATGTTTTATTGGCAGCTAAAAATATTCTTGAAATTCTCTCGCTCATA GGTTTTTGAAATCTTTGTATGATGATATATGTTGGATTTGGATTAGCAAC TAATAATAATACTCCTTTTTATATTTAGAATATCAGCTGGGCGTAACGCC ATCAAGAATCGTCGCCAGGGTGGTCAGGGTGGCCAGGGTGGTGCTAACAA CGGTGGCGGCAGTGGTGACGAAAGGCGTGGTCGACGAAACGATCGAAACG ATTATAATCGCGAATAAGAAACGCCCTCTCTTTTCGCCCCCTTTACCCCT TTACTAAATGAACTTTTTCTAGCATGTTATGATGTCAAGATCAAGCATGT GCTTTTATTCCCCCCTTTTAGCAATTTTATCTAGTTTTTAAATATTCTTT TCGTTTTCTTTTTTCATGACTGACTGCTTGTTGCATTCTCATAGTTTTCA ATTTTTTTTAAATTATTTCGTAGAACTTATGACGAAGCGATATTTATGTG GGACATATACACTAAGAAAAATCTACTGTGACTTTTTGGGTGATTTAACG GTGAAAAGCTACAGTGTTGGAAATTTTCAGCTTTTCACCTTGTTTTCATC CAAAATGCCACGGTGAATCTTTTTGATTTCTTTCTGTGATACCACCACTT ACCACGCATTTCAAAAAATCTCATTCTCTCTCAAAAACGAAGAAAGATTT CTGTTAATTTGATTTTTATCAAAAATATTTTTTTCTGTTTCGTTTATTAT GATCATAATTTATTATAATGTATAGATATTGATTTTGTTCGTTTTTTAGT ATTTTATGTTTTAGGATTTTAGTTTTAAAAAGGATGACAAGTTCGTTTAT GAAATAGCAAGGCTTTATGACTGCCTTCCAGTTCATTTAGTTTCTATGTA TGTGTAGCATTGTGTTTGTGTTGTTTTATGTACGCATTTTGAATTTTAGG CGGAATTCCTATTTTTCGTCCTGTTATTTACTCGTTCGTTATTTACAATA TATGTTTTGTTGTTTTTTGTTTGTGTTTTTATTGTTTTCACTCAAATTTT TCAGAAAGTCTTATTCGTTCACGGTATTTGAATCGTTGTTCTCTGCAATC TTTTCTGCTCCACCCTCTGAGTTTCTTCTTTAATGGGTTTATACTTCTGA GCCTCTTTAAACGCCCATTTACAGCGCCACTTATTTGTGGGCTACGCCCT TTCTGATCCCCTCCTTTTTGCATTGTTGTTAATTGCCGCATCATCTAAGT TAATTTTAGGAAGATTATTTCACTATCAGATATTATAATGGAAATATATT TGGAAATAAAAAGAGCTGTAAAATATAATGTTTCTATGTTTTTTAATTAT TTTTAGTCCTTGCCTATACGTTGATGACACAGCGACTTAGGGTTGGATAG GTTCCTGGTTTCCAGCATTAGTTCTCGCTAAGATTGAAGATTGCGCCAAA ATGAGTACTTCGTCAAAATTATGTTTTTCATGATTTACATATCCTGTCAG TCACCAAAATTTGCTCTCGTGAAGATTAAAAAAATTGATGCCTCG

Coding sequence (CDS) from alignment at scaffold_200:49442..54636-

>TCONS_00051311 ID=TCONS_00051311|Name=TCONS_00051311|organism=Clytia hemisphaerica|type=CDS|length=2502bp|location=Sequence derived from alignment at scaffold_200:49442..54636- (Clytia hemisphaerica)
AATATCAGCTGGGCGTAACGCCATCAAGAATCGTCGCCAGGGTGGTCAGG
GTGGCCAGGGTGGTGCTAACAACGGTGGCGGCAGTGGTGACGAAAGGCGT
GGTCGACGAAACGATCGAAACGATTATAATCGCGAATAAACAATTTTCTG
GTGCAACAGTACAAATTGAGGAGAACAAAAAGGATAGTCGAATGTCAGAT
GTTGTGATCGCTGGAACACCAGAAGCTGTCAGTTGTGCAACCTTCCTCAT
CAATGCAAGGTTATCGGTTCTTTAATCGGAAAAGGTGGCTGTCATATAAA
CGAAATCAGGCCTATCAAGACGCAGTGAACAAAGAGTTCGACTTCCAAGC
AACGTATCGGTTATGTCGGGTCAATTATCTCTGCAAGATGTATGGACGTT
CAATGGGCCCCACTCAGAATATCAGCTGGGCGTAACGCCATCAAGAATCG
TCGCCAGGGTGGTCAGGGTGGCCAGGGTGGTGCTAACAACGGTGGCGGCA
GTGGTGACGAAAGGCGTGGTCGACGAAACGATCGAAACGATTATAATCGC
GAATAAACAATTTTCTGGTGCAACAGTACAAATTGAGGAGAACAAAAAGG
ATAGTCGAATGTCAGATGTTGTGATCGCTGGAACACCAGAAGCTGTCAGT
TGTGCAACCTTCCTCATCAATGCAAGGTTATCGGTTCTTTAATCGGAAAA
GGTGGCTGTCATATAAACGAAATCAGGCCTATCAAGACGCAGTGAACAAA
GAGTTCGACTTCCAAGCAACGTATCGGTTATGTCGGGTCAATTATCTCTG
CAAGATGTATGGACGTTCAATGGGCCCCACTCAGAATATCAGCTGGGCGT
AACGCCATCAAGAATCGTCGCCAGGGTGGTCAGGGTGGCCAGGGTGGTGC
TAACAACGGTGGCGGCAGTGGTGACGAAAGGCGTGGTCGACGAAACGATC
GAAACGATTATAATCGCGAATAAACAATTTTCTGGTGCAACAGTACAAAT
TGAGGAGAACAAAAAGGATAGTCGAATGTCAGATGTTGTGATCGCTGGAA
CACCAGAAGCTGTCAGTTGTGCAACCTTCCTCATCAATGCAAGGTTATCG
GTTCTTTAATCGGAAAAGGTGGCTGTCATATAAACGAAATCAGGCCTATC
AAGACGCAGTGAACAAAGAGTTCGACTTCCAAGCAACGTATCGGTTATGT
CGGGTCAATTATCTCTGCAAGATGTATGGACGTTCAATGGGCCCCACTCA
GAATATCAGCTGGGCGTAACGCCATCAAGAATCGTCGCCAGGGTGGTCAG
GGTGGCCAGGGTGGTGCTAACAACGGTGGCGGCAGTGGTGACGAAAGGCG
TGGTCGACGAAACGATCGAAACGATTATAATCGCGAATAAACAATTTTCT
GGTGCAACAGTACAAATTGAGGAGAACAAAAAGGATAGTCGAATGTCAGA
TGTTGTGATCGCTGGAACACCAGAAGCTGTCAGTTGTGCAACCTTCCTCA
TCAATGCAAGGTTATCGGTTCTTTAATCGGAAAAGGTGGCTGTCATATAA
ACGAAATCAGGCCTATCAAGACGCAGTGAACAAAGAGTTCGACTTCCAAG
CAACGTATCGGTTATGTCGGGTCAATTATCTCTGCAAGATGTATGGACGT
TCAATGGGCCCCACTCAGAATATCAGCTGGGCGTAACGCCATCAAGAATC
GTCGCCAGGGTGGTCAGGGTGGCCAGGGTGGTGCTAACAACGGTGGCGGC
AGTGGTGACGAAAGGCGTGGTCGACGAAACGATCGAAACGATTATAATCG
CGAATAAACAATTTTCTGGTGCAACAGTACAAATTGAGGAGAACAAAAAG
GATAGTCGAATGTCAGATGTTGTGATCGCTGGAACACCAGAAGCTGTCAG
TTGTGCAACCTTCCTCATCAATGCAAGGTTATCGGTTCTTTAATCGGAAA
AGGTGGCTGTCATATAAACGAAATCAGGCCTATCAAGACGCAGTGAACAA
AGAGTTCGACTTCCAAGCAACGTATCGGTTATGTCGGGTCAATTATCTCT
GCAAGATGTATGGACGTTCAATGGGCCCCACTCAGAATATCAGCTGGGCG
TAACGCCATCAAGAATCGTCGCCAGGGTGGTCAGGGTGGCCAGGGTGGTG
CTAACAACGGTGGCGGCAGTGGTGACGAAAGGCGTGGTCGACGAAACGAT
CGAAACGATTATAATCGCGAATAAACAATTTTCTGGTGCAACAGTACAAA
TTGAGGAGAACAAAAAGGATAGTCGAATGTCAGATGTTGTGATCGCTGGA
ACACCAGAAGCTGTCAGTTGTGCAACCTTCCTCATCAATGCAAGGTTATC
GGTTCTTTAATCGGAAAAGGTGGCTGTCATATAAACGAAATCAGGCCTAT
CAAGACGCAGTGAACAAAGAGTTCGACTTCCAAGCAACGTATCGGTTATG
TCGGGTCAATTATCTCTGCAAGATGTATGGACGTTCAATGGGCCCCACTC
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032517XLOC_032517Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051311-proteinTCONS_00051311-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051311-exon-scaffold_200-1575043694:54423..54636TCONS_00051311-exon-scaffold_200-1575043694:54423..54636Clytia hemisphaericaexon
TCONS_00051311-exon-scaffold_200-1575043694:54194..54227TCONS_00051311-exon-scaffold_200-1575043694:54194..54227Clytia hemisphaericaexon
TCONS_00051311-exon-scaffold_200-1575043694:53905..53948TCONS_00051311-exon-scaffold_200-1575043694:53905..53948Clytia hemisphaericaexon
TCONS_00051311-exon-scaffold_200-1575043694:52767..52816TCONS_00051311-exon-scaffold_200-1575043694:52767..52816Clytia hemisphaericaexon
TCONS_00051311-exon-scaffold_200-1575043694:52068..52187TCONS_00051311-exon-scaffold_200-1575043694:52068..52187Clytia hemisphaericaexon
TCONS_00051311-exon-scaffold_200-1575043694:49442..50858TCONS_00051311-exon-scaffold_200-1575043694:49442..50858Clytia hemisphaericaexon
TCONS_00051311-exon-scaffold_200-1510915933:54423..54636TCONS_00051311-exon-scaffold_200-1510915933:54423..54636Clytia hemisphaericaexon
TCONS_00051311-exon-scaffold_200-1510915933:54194..54227TCONS_00051311-exon-scaffold_200-1510915933:54194..54227Clytia hemisphaericaexon
TCONS_00051311-exon-scaffold_200-1510915933:53905..53948TCONS_00051311-exon-scaffold_200-1510915933:53905..53948Clytia hemisphaericaexon
TCONS_00051311-exon-scaffold_200-1510915933:52767..52816TCONS_00051311-exon-scaffold_200-1510915933:52767..52816Clytia hemisphaericaexon
TCONS_00051311-exon-scaffold_200-1510915933:52068..52187TCONS_00051311-exon-scaffold_200-1510915933:52068..52187Clytia hemisphaericaexon
TCONS_00051311-exon-scaffold_200-1510915933:49442..50858TCONS_00051311-exon-scaffold_200-1510915933:49442..50858Clytia hemisphaericaexon
TCONS_00051311-exon-scaffold_200-1491911889:54423..54636TCONS_00051311-exon-scaffold_200-1491911889:54423..54636Clytia hemisphaericaexon
TCONS_00051311-exon-scaffold_200-1491911889:54194..54227TCONS_00051311-exon-scaffold_200-1491911889:54194..54227Clytia hemisphaericaexon
TCONS_00051311-exon-scaffold_200-1491911889:53905..53948TCONS_00051311-exon-scaffold_200-1491911889:53905..53948Clytia hemisphaericaexon
TCONS_00051311-exon-scaffold_200-1491911889:52767..52816TCONS_00051311-exon-scaffold_200-1491911889:52767..52816Clytia hemisphaericaexon
TCONS_00051311-exon-scaffold_200-1491911889:52068..52187TCONS_00051311-exon-scaffold_200-1491911889:52068..52187Clytia hemisphaericaexon
TCONS_00051311-exon-scaffold_200-1491911889:49442..50858TCONS_00051311-exon-scaffold_200-1491911889:49442..50858Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_200supercontigscaffold_200:49442..54636 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.091 9.15665 10.8482 11.4605 180.23 132.233 214.159 228.032 110.76 119.477 173.154 110.599 109.202 112.16 99.6415 116.925 143.802 176.342 87.7124 78.173 168.264 168.555 104.472 134.398 128.916 138.953 129.454 177.763 28.2717 32.1196
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004087KH_dom
IPR004088KH_dom_type_1
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051311 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top