TCONS_00051317 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051317
Unique NameTCONS_00051317
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length754

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051317 ID=TCONS_00051317|Name=TCONS_00051317|organism=Clytia hemisphaerica|type=transcript|length=754bp
CTAAGTTatcatttctttgaaaataagggTTTAAATATGCTATTtattaa
ttcttataaaataatatgTTAGTCACTAGTTAGTCCAtgcatgaaaaaag
aatttcattgCTTAAAAGCCAATCTAATCTTTGTGGGACTTCTTGTGAGA
CTTCTTGCAACATTTCTTATCACAACCAGCCAAACATTTACGTTTGCACA
TGCCACAAGAAGGAGCCATTGGTGCTGGTGGAGCGCAAGGAGCACAAGGT
GGTGGACAGGCAGGGGCAGGTGGAGCACAAGGTGGTGGGCAAGCAGGGGC
AGGTGGAGCACAAGGTGGTGGGCAGGCAGGTGCACATGGCGCTTGACAAG
GTGGTGCAGCAGGAGCACAAGGAGGATGTGCACATGGCATAGCAGCAGGC
ATTGGTTGGGCGCAAGGAGGTTGAGCACAAGGCATTTGTGCAGGCATACA
AGGGGGTTGAGCACAGGGCATTTGTGCAGGCATACAAGGGGGTTGAGCAC
AAGGCATTAGTTGTGGCATAGGAGGTGCACATGGCGGGGCGCAGGGTGGA
GCACATGGAGGAGACATCGGTGTCATTGGTGGGCAATCAGGTAGAACAGC
TGGCATGTCTGGTTGAGCTTTTGGTGGTGGTTTGGAGCCATCGGAAAGAG
GAGGTTGAACTCCTGCACCTaggatcaaaaaaagaaagaaaacatgcATA
CACATAAAATCatgcaaaaacttttttcttcatcgTGCTTACACAAGGGT
TAAA
Run BLAST on NCBI

transcript from alignment at scaffold_200:99447..100482-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051317 ID=TCONS_00051317|Name=TCONS_00051317|organism=Clytia hemisphaerica|type=transcript|length=1036bp|location=Sequence derived from alignment at scaffold_200:99447..100482- (Clytia hemisphaerica)
CTAAGTTATCATTTCTTTGAAAATAAGGGTTTAAATATGCTATTTATTAA
TTCTTATAAAATAATATGTTAGTCACTAGTTAGTCCATGCATGAAAAAAG
AATTTCATTGCTTAAAAGCCAATCTAATCTTTGTGGGACTTCTTGTGAGA
CTTCTTGCAACATTTCTTATCACAACCAGCCAAACATTTACGTTTGCACA
TGCCACAAGAAGGAGCCATTGGTGCTGGTGGAGCGCAAGGAGCACAAGGT
GGTGGACAGGCAGGGGCAGGTGGAGCACAAGGTGGTGGGCAAGCAGGGGC
AGGTGGAGCACAAGGTGGTGGACAGGCAGGAGCTGGTGGAGCGCAAGGTG
GTGGGCAGGCAGGGGCAGGTGGGGCACAAGGTGGTGGGCAGGCAGGTGCA
CATGGCGCTTGACAAGGTGGTGCAGCAGGAGCACAAGGAGGATGTGCACA
TGGCATAGCAGCAGGCATTGGTTGGGCGCAAGGAGGTTGAGCACAAGGCA
TTTGTGCAGGCATACAAGGGGGTTGAGCACAGGGCATTTGTGCAGGCATA
CAAGGAGGTTGAGCACAAGGCATTTGTGCAGGCATACAAGGAGGTTGAGC
ACAAGGCATTTGTGCAGGCATACAAGGGGGTTGAGCACAGGGCATTTGTG
CAGGCATACAACGAGGCTGAGCACAAGGCATTTGTGCAGGCATACAAGGA
GGTTGAGCACAAGGCATTTGTGCAGGCATACAAGGAGGTTGAGCACAAGG
CATTTGTGCAGGCATACAAGGGGGTTGAGCACAAGGCATTAGTTGTGGCA
TAGGAGGTGCACATGGCGGGGCGCAGGGTGGAGCACATGGAGGAGACATC
GGTGTCATTGGTGGGCAATCAGGTAGAACAGCTGGCATGTCTGGTTGAGC
TTTTGGTGGTGGTTTGGAGCCATCGGAAAGAGGAGGTTGAACTCCTGCAC
CTAGGATCAAAAAAAGAAAGAAAACATGCATACACATAAAATCATGCAAA
AACTTTTTTCTTCATCGTGCTTACACAAGGGTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032518XLOC_032518Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051317-exon-scaffold_200-1575043694:100169..100482TCONS_00051317-exon-scaffold_200-1575043694:100169..100482Clytia hemisphaericaexon
TCONS_00051317-exon-scaffold_200-1575043694:100125..100135TCONS_00051317-exon-scaffold_200-1575043694:100125..100135Clytia hemisphaericaexon
TCONS_00051317-exon-scaffold_200-1575043694:99938..100091TCONS_00051317-exon-scaffold_200-1575043694:99938..100091Clytia hemisphaericaexon
TCONS_00051317-exon-scaffold_200-1575043694:99447..99721TCONS_00051317-exon-scaffold_200-1575043694:99447..99721Clytia hemisphaericaexon
TCONS_00051317-exon-scaffold_200-1510915933:100169..100482TCONS_00051317-exon-scaffold_200-1510915933:100169..100482Clytia hemisphaericaexon
TCONS_00051317-exon-scaffold_200-1510915933:100125..100135TCONS_00051317-exon-scaffold_200-1510915933:100125..100135Clytia hemisphaericaexon
TCONS_00051317-exon-scaffold_200-1510915933:99938..100091TCONS_00051317-exon-scaffold_200-1510915933:99938..100091Clytia hemisphaericaexon
TCONS_00051317-exon-scaffold_200-1510915933:99447..99721TCONS_00051317-exon-scaffold_200-1510915933:99447..99721Clytia hemisphaericaexon
TCONS_00051317-exon-scaffold_200-1491911889:100169..100482TCONS_00051317-exon-scaffold_200-1491911889:100169..100482Clytia hemisphaericaexon
TCONS_00051317-exon-scaffold_200-1491911889:100125..100135TCONS_00051317-exon-scaffold_200-1491911889:100125..100135Clytia hemisphaericaexon
TCONS_00051317-exon-scaffold_200-1491911889:99938..100091TCONS_00051317-exon-scaffold_200-1491911889:99938..100091Clytia hemisphaericaexon
TCONS_00051317-exon-scaffold_200-1491911889:99447..99721TCONS_00051317-exon-scaffold_200-1491911889:99447..99721Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_200supercontigscaffold_200:99447..100482 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.306573	0.231196	6.9467	9.6875	1.03672	3.57507	23.2631	4.39754	16.8009	15.7886	10.8612	58.4345	24.2834	32.9192	0	0.00878872	15.7673	21.7871	10.8316	12.5236	2.63751	3.83468	0.893212	0	0.110626	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051317 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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