TCONS_00051318 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051318
Unique NameTCONS_00051318
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length996

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051318 ID=TCONS_00051318|Name=TCONS_00051318|organism=Clytia hemisphaerica|type=transcript|length=996bp
GCATAACGCTGATTACGAATTTTTATGATTATCATTAACATAGACATACC
GTGGTGATTTTTACTTTGCTAAGTTatcatttctttgaaaataagggTTT
AAATATGCTATTtattaattcttataaaataatatgTTAGTCACTAGTTA
GTCCAtgcatgaaaaaagaatttcattgCTTAAAAGCCAATCTAATCTTT
GTGGGACTTCTTGTGAGACTTCTTGCAACATTTCTTATCACAACCAGCCA
AACATTTACGTTTGCACATGCCACAAGAAGGAGCCATTGGTGCTGGTGGA
GCACAAGGTGGTGGGCAGGCAGGGGCAGGTGGGGCACAAGGTGGTGGGCA
GGCAGGTGCACATGGCGCTTGACAAGGTGGTGCAGCAGGAGCACAAGGAG
GATGTGCACATGGCATAGCAGCAGGCATTGGTTGGGCGCAAGGAGGTTGA
GCACAAGGCATTTGTGCAGGCATACAAGGGGGTTGAGCACAGGGCATTTG
TGCAGGCATACAAGGAGGTTGAGCACAAGGCATTTGTGCAGGCATACAAG
GAGGTTGAGCACAAGGCATTTGTGCAGGCATACAAGGGGGTTGAGCACAG
GGCATTTGTGCAGGCATACAACGAGGCTGAGCACAAGGCATTTGTGCAGG
CATACAAGGAGGTTGAGCACAAGGCATTTGTGCAGGCATACAAGGAGGTT
GAGCACAAGGCATTTGTGCAGGCATACAAGGGGGTTGAGCACAAGGCATT
AGTTGTGGCATAGGAGGTGCACATGGCGGGGCGCAGGGTGGAGCACATGG
AGGAGACATCGGTGTCATTGGTGGGCAATCAGGTAGAACAGCTGGCATGT
CTGGTTGAGCTTTTGGTGGTGGTTTGGAGCCATCGGAAAGAGGAGGTTGA
ACTCCTGCACCTaggatcaaaaaaagaaagaaaacatgcATACACATAAA
ATCatgcaaaaacttttttcttcatcgTGCTTACACAAGGGTTAAA
Run BLAST on NCBI

transcript from alignment at scaffold_200:99447..100550-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051318 ID=TCONS_00051318|Name=TCONS_00051318|organism=Clytia hemisphaerica|type=transcript|length=1104bp|location=Sequence derived from alignment at scaffold_200:99447..100550- (Clytia hemisphaerica)
GCATAACGCTGATTACGAATTTTTATGATTATCATTAACATAGACATACC
GTGGTGATTTTTACTTTGCTAAGTTATCATTTCTTTGAAAATAAGGGTTT
AAATATGCTATTTATTAATTCTTATAAAATAATATGTTAGTCACTAGTTA
GTCCATGCATGAAAAAAGAATTTCATTGCTTAAAAGCCAATCTAATCTTT
GTGGGACTTCTTGTGAGACTTCTTGCAACATTTCTTATCACAACCAGCCA
AACATTTACGTTTGCACATGCCACAAGAAGGAGCCATTGGTGCTGGTGGA
GCGCAAGGAGCACAAGGTGGTGGACAGGCAGGGGCAGGTGGAGCACAAGG
TGGTGGGCAAGCAGGGGCAGGTGGAGCACAAGGTGGTGGACAGGCAGGAG
CTGGTGGAGCGCAAGGTGGTGGGCAGGCAGGGGCAGGTGGGGCACAAGGT
GGTGGGCAGGCAGGTGCACATGGCGCTTGACAAGGTGGTGCAGCAGGAGC
ACAAGGAGGATGTGCACATGGCATAGCAGCAGGCATTGGTTGGGCGCAAG
GAGGTTGAGCACAAGGCATTTGTGCAGGCATACAAGGGGGTTGAGCACAG
GGCATTTGTGCAGGCATACAAGGAGGTTGAGCACAAGGCATTTGTGCAGG
CATACAAGGAGGTTGAGCACAAGGCATTTGTGCAGGCATACAAGGGGGTT
GAGCACAGGGCATTTGTGCAGGCATACAACGAGGCTGAGCACAAGGCATT
TGTGCAGGCATACAAGGAGGTTGAGCACAAGGCATTTGTGCAGGCATACA
AGGAGGTTGAGCACAAGGCATTTGTGCAGGCATACAAGGGGGTTGAGCAC
AAGGCATTAGTTGTGGCATAGGAGGTGCACATGGCGGGGCGCAGGGTGGA
GCACATGGAGGAGACATCGGTGTCATTGGTGGGCAATCAGGTAGAACAGC
TGGCATGTCTGGTTGAGCTTTTGGTGGTGGTTTGGAGCCATCGGAAAGAG
GAGGTTGAACTCCTGCACCTAGGATCAAAAAAAGAAAGAAAACATGCATA
CACATAAAATCATGCAAAAACTTTTTTCTTCATCGTGCTTACACAAGGGT
TAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032518XLOC_032518Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051318-exon-scaffold_200-1575043694:100256..100550TCONS_00051318-exon-scaffold_200-1575043694:100256..100550Clytia hemisphaericaexon
TCONS_00051318-exon-scaffold_200-1575043694:100202..100213TCONS_00051318-exon-scaffold_200-1575043694:100202..100213Clytia hemisphaericaexon
TCONS_00051318-exon-scaffold_200-1575043694:99447..100135TCONS_00051318-exon-scaffold_200-1575043694:99447..100135Clytia hemisphaericaexon
TCONS_00051318-exon-scaffold_200-1510915933:100256..100550TCONS_00051318-exon-scaffold_200-1510915933:100256..100550Clytia hemisphaericaexon
TCONS_00051318-exon-scaffold_200-1510915933:100202..100213TCONS_00051318-exon-scaffold_200-1510915933:100202..100213Clytia hemisphaericaexon
TCONS_00051318-exon-scaffold_200-1510915933:99447..100135TCONS_00051318-exon-scaffold_200-1510915933:99447..100135Clytia hemisphaericaexon
TCONS_00051318-exon-scaffold_200-1491911889:100256..100550TCONS_00051318-exon-scaffold_200-1491911889:100256..100550Clytia hemisphaericaexon
TCONS_00051318-exon-scaffold_200-1491911889:100202..100213TCONS_00051318-exon-scaffold_200-1491911889:100202..100213Clytia hemisphaericaexon
TCONS_00051318-exon-scaffold_200-1491911889:99447..100135TCONS_00051318-exon-scaffold_200-1491911889:99447..100135Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_200supercontigscaffold_200:99447..100550 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2.42071	2.49128	1.31785	0	0	0	0.519587	0.518933	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051318 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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