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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051320 ID=TCONS_00051320|Name=TCONS_00051320|organism=Clytia hemisphaerica|type=transcript|length=909bp
CTTACCTTCTCCCACATACCAATGTACAAAAGCACGTTTGGCATACATCA
AATCGAACTTATGATCGAGACTTGACCAGGCTTCAGCAATAGCAGTCGTA
TTAGCTAAGGAACAAACAGCCCTCTTGACTTGAGCTAAATCACCTCCAGG
AACAACGACAGGGGCATTGTTATTGATCCCAACTTTAAATCCAGTTGGGC
ACCAATTCACAAACTGGATGGTTCGTTTGGTCTTGATTTGAGCAATTGCG
GTGTTGACATCTTTGGGGACGATTTCGCCACGGTATAGAAGACAACAAGC
CATGTATTTCCCATGTCGAGGATCGCATTTCACCATTTGATTCTGTGGTT
CAAAACAAGCATTGGTGATTTCTTGGACATTATGATTTTCGTGAGACGCT
TTTTCAGCTGACATGATAGGACCAAATGACGTAATTGGGAAATGGATTCT
GGGGTATGGGACCAAGTTTGTTTGGAACTCATTCAGATCGACGTTTAAAG
CTCCTTCGAATCTCAAGGAAGCTGTAACAGAGGAAACCACTTGACCAATC
AAACGGTTCAGATTGAAATATGATGGACGATCAACACTTAAATTACGTTT
GCAAATATCGTAGATAGCTTCATTATCAACCATGAAAGCGACATCTGAGT
GCTCCAAGGTAGTGTGGGTTGTAAGAATAGCATTGTAAGGTTCAACGACA
GCGGTGGAAACTTTTGGAGAAGGGTAGATAGAAAATTCTAGCTTAGCTTT
CTTTCCATATTCCACTGATAAACGTTCCATGAGAAGGGATGTGAAGCCGG
ACCCAGTTCCTCCTCCGTACGAATGAAAAATCAAGAACCCCTGAAGACCG
GTGCAAAGATCGCATAATTTGCGGATTCGATCCAATGTTTGATCAATATA
CTCCTTCCC Run BLAST on NCBI transcript from alignment at scaffold_200:129951..137591- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051320 ID=TCONS_00051320|Name=TCONS_00051320|organism=Clytia hemisphaerica|type=transcript|length=7641bp|location=Sequence derived from alignment at scaffold_200:129951..137591- (Clytia hemisphaerica)
CTTACCTTCTCCCACATACCAATGTACAAAAGCACGTTTGGCATACATTA
AATCGAATTTATGATCCAATCGAGCCCAGGCTTCTCCAATAGCAGTAGTG
TTAGACAACATACAAACTGCACGTTGGACTTTAGCGAGGTCACCTCCTGG
GACAACACATGGTGGTTGGTAATTGATTCCAATCTTGAATCCAGTTGGAC
ACCAATCAACGAATTGGATGGTTCGTTTAGTTTTGATGTTGGCGATAGCA
GCATTGACGTCTTTAGGGACAACATCACCACGGTAGAGTAGACAACATGA
CATGTATTTGCCATGTCGTGGATCGCATTTCACCATTTGGTTCTGTGGTT
CAAAGCAAGCGTTGGTGATTTCAGCTACGGTGATCTGTTCGTGAAAAGCT
TTCTCAGCGGAGATAACTGGAGCGTAGGTAGCCATTGGGAAATGAATTCT
GGGATATGGGACCAAGTTAGTTTGGAACTCGGTCAAGTCAACATTCAAGG
ATCCATCAAATCGAAGGGAAGCTGTGATTGAGGAGACGATTTGACTGATC
AATCTGTTCAAGTTCGTGTAGGAAGGTCGTTCAATATCTAAGTTTTTACG
ACAGATATCATAAATGGCTTCATTATCAACCATGAAAGCACAATCAGTGT
GCTCCAAAGTTGTGTGGGTGGTCAAGATGGAATTGTATGGTTCAACGACA
GCTGTGGAGACTTGCGGTGCTGGATAGATAGCGAATTCTAATTTCGACTT
CTTTCCATAGTCGACGGAGAGACGTTCCATCAACAAGGATGAGAATCCAG
ATCCGGTACCTCCACCGAAAGAGTGGAAGATCAAGAATCCTTGAAGACCG
GTGCAATTCTCGGACAGTTTTCGGACTCGGTCTAAGGTTTGGTCAATGTA
TTCTTTGCCTAAGAGAGAGAAAAAGAAGGTCATTAACAGGTTGGCGAATT
TTCCATTTGAAGCTAGACGGTAATTATAAAGACAATATCGTCAGATTAGT
GTCTTCATGAATTTTCTCTGCAATAGAGTGCAAAATCCACGAGGTAAAAT
ATCAAAATTCTTTTACAAACATCAATAATAATTTAACTTCAAATATCAAA
AAAATCCTCACCGACAGTATAATGTCCTCTAGCGTAATTGTTTGCGGCAT
CTTCTTTTCCGGTGATTAATTGTTCCGGATGAAAAAGTGAACGATATGTA
CCGGTACGCACTTCGTCTACAAAATAGAAGATATAGCTCGTTAATGAGGT
CGAAATATAATTAATTGCTTAATGAGGTTTTTGGGTGATTAGAGAACAAA
ACAGGAGGTTGCTAAAAATTTGGCAACAAATTTCGAGCAAATGCATATTG
CAAGAGCCATACAGCTTTACAATTATGAAGTAAAAGATATATCAATTTTG
ATAACATATGTCAAAGAATGTTTTTCAAAAAGACGGCAATTAGACGGTAT
AAAGACTCATCCTTTTTGAATTGCTAGGGCGGTAACGAAGTTTAATTAGA
AGATTTAGCAAGGATTTCCAAAAGCTATTATGTACAAGAAAGAATGTTAT
TCTGTTACGTATTCATGATATTAATGACGTAATGATTTCTACGGAAAGAC
CCCGGTTTTTGCCAGAAGTAGCAAATTTCATGTAACTTTTGTCTGGTTTA
AATTTGTCACTACTTGCTTAAACCGGGGTATTTCCGTTAAAAACATTACG
TCATGAATTTCATGAATAAGTAAAAGATTTGAAAGAAAAAAACTTTCAGG
GATTTGTAAGAAATAGTAGGGGGAATTTTGTTCGATTTTTTGGAATCGCT
TGACTGTTTTGTTAGAAGCACTTGTTATACATTTTTGGAAAGCTAAGGGG
TAGGGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNGGTTAAAAATTAATGAAAATATTAGCT
CGAGAAAACGGAGACCTGTTGTATATTTTTGGAAAGCTCTCAAAAAAATA
AGATTAGAGATATATTGCAAGTTTAGGTGATTTTTGTACCTAACTCGAGA
TATTAACCCTTGAAAACCGTGTTTTTCAGCCAGAAACAGCTATTTTGTCC
AGTTTTTGCGCTTTTTGAAGCTCAATATCTCGAGTTAGGTACTGAAATCA
CCTATACTTGCAATATATCTCTAATCCTATTTTTTTGAGAGCTTTCCAAA
AATATACAACAGGTTTCAATTTTCTCGAGCTAAAATTTTCATTAATTTTT
AACCCTATGATTTTTGCCTGAGACCGTCATATTTGTCCGAAAATCACACC
AAAGTGTCCGAAAAAAAATTGGAAACATAGAAATTTCGATTCCCCTACCC
CTTAGCTTTCCAAAGATGTATAACAAGTGCTTCTAACAAAACAGTCGAGC
GATTTTACAAAATGCCCTCTACTAAAAGTAGGCAGCTAGATTTTGATACC
TTATGAAAAAAGTGTAAAAAGTTTTTTGTTGAAAATCTCTTAGAAACCGT
GTGACCTAACGCTTCTAAAAGCGCAAATATTATTCTCGATAAGGCGTGGA
ATCAAAACATATGAATCTATAGAAATACGTTGTTTTGTATACCTCCTAGC
AATCAAGTTGCTATGGTAACCGCATTATTTTCCATGCAAGCAAATTAATT
AGTAGATAACAAAGAGGGAAAATTAATGTTCATTTTGAATGGCAAACAGG
GCGTTTCACGTGAAGAGAAATTTCATTAGCATCGTGGTACAGTTTGGCAT
GAATTACTTTCTAATAGTATTACTGAGGCAGTACCAACAATGTTATTATA
CCATCATCGTCAGAAAAAGCTGATCTAAACGGATGTTTTCAGTCTTAAGC
CCGTCCCAAATTGTAAATGTTTGGAATGCCGTCTAAGGTTTAAATTCTCT
TATTCTTGATATGCGTAAGTCAAGATGACGTCATATTTTTAACGGAAGCA
CCCAAAAAAGCCGGATTTTGACCTCTGTGTTTCTATTTTTAGTAACAGAG
AGGGGTCAAATCCCGGATTTTTTCGGGTGTTTCCGCTAGAAAAATGACTT
ACGCATATCAAGAATTAATTGACAAGGGGTTTAAAGCTTTACGAGAGACA
TCTTTGTAATATCGCTGTGTCTATACCAAACAAAATACAGTGAGCAGAAA
AATAAGAATTAGTTTATTAAATAACTTTGGCTCTTACCAACAACTGAGGG
TTCAAGATCGATGAAAACAGCTCTGGGGACGTGTTTACCAGAACCAGTCT
CACTGAAGAAAGTGTTGAATGAATCATCTCCCCCTCCAATGGTTTTATCT
GAAGGCATTTGACCATCAGGTTGGATTCCATGCTCCAAACAATATAATTC
CCAACAAGCATTTCCGATTTGGACACCGGCTTGTCCAACGTGAACTGAAA
TACACTCTCTCTGAGAAAAAAGAAATATTTAGTCAGTTAGGCTGCTTTTA
GAACGTCCACGCCGTCAAATTCTACAAAATATATTTCGTTATAGTTGGCT
ATTGTTCGAAATCGAATATCTATTGTTCTCAACAATGCATCAACAATCTT
CAAGTGACTAAATGGTCATTTTTAGCAAACGAGCCAAAAAATGCGAAAAC
TCACCATTTTTGCAAACTAGTAAAAAACTATAGTAACGATAAAAGTTTTT
CCTCCAGTGAGCGTTTAACGTATTGAAACGAAATTCAAAAATGTCAAACT
TTAAAACTCACTTCATTACTTCATTACATATAAAAGCCACGTTTGTGAAT
TCAAAATGGTAGACAATACTCGTTTCTAATTGGTTGTTTTCCTATTGTTG
GCGGCTTATTTATCAACAAATAGGAGACATTTTATCTATAGCTCTCCAAC
ATAATGAGTATTACGAGTGATAACAAAGATCTAATTATAAGATTATGTCG
TTTGTGATGAGACAATAAGAAAACCCCATGAAAAATTCAAATATGCATAT
AATAATAAAACGCATCTTTTATTTGTAAGCCTCTGTCAAAAAGTAAGATA
TTCTTATAATTAAGGTGTTAACTTACAGCTCCTAAAGAAGACTACTGGAC
ACTGGAACCAACCAATAAGACTTCATCGAACCAAGGATCCACGTGAAACC
AAATGAAGGACAATATTTTCTATACTTTTTTCTGAAATGAGAAAGTCGAT
TAGCAATATAATTCTAAGAATATGAAAGGGGTATATAGAATGGTCTATAA
TCTAACATAATGTTCTTAGCCAGTAACCTAGCCTGTAGCTTTTTCTTATA
ACAAAAAGGGACCGCTGTGAAATATTTTTATTCATTTACATCAATAAACT
CAAGCTGTTTGTTTTGTCCAAATCTTTTCCTCATTTCAAATCACTACGTT
CCGGAGACATCAAATCAATTGGTGAATAGAACGAGCCATGATTTATGCAT
AACCTAGTCGAAAATGTTTTGACCTAACACATAAAAAGGACAAATAGGTA
AAAAGCAAGAGTTTTTCTAAAAACGAAGGCTCGTAAAACAGCTTGGTTAG
AAATGACATGACATCAATTCTTTTCATTTCAAATTTTACAAAAACATTTA
AAAAAAGAATAAATTACGAAAGGAAACGATGTGTTCACTTACAGTAGTTC
ATCTATATACAATAGCAAAAACAGCAAAAACATAATATTTTACCAATTTA
ACTGAGATGTGAAAGTTAAAAGCATTGAGCCATCCTCGTAAGCTAAACTC
GCTTTTTATAAGAATAAATTTTTCAAAACAACGATGCTCGAAATCCTCAA
TAATGCTGAGCCTGGAATTGCTGAATTTGTAGCAAAAAGTGTCAAAAGAC
AAAAATCGGCTATAAAGCGTAACACCGTAACACAATTTTGATAAAAAAAT
GCCCCACTTTTGTCCTAAAAATAAGAACAAGATGAGAACATTATAATGTA
ATTTGAGGCTTTCAAAAAATTAGAACAGCAAAATTTGAATAAAANACTTC
ATCGAACCAAGGATCCACGTGAAACCAAATGAAGGACAATATTTTCTATA
CTTTTTTCTGAAATGAGAAAGTCGATTAGCAATATAATTCTAAGAATATG
AAAGGGGTATATAGAATGGTCTATAATCTAACATAATGTTCTTAGCCAGT
AACCTAGCCTGTAGCTTTTTCTTATAACAAAAAGGGACCGCTGTGAAATA
TTTTTATTCATTTACATCAATAAACTCAAGCTGTTTGTTTTGTCCAAATC
TTTTCCTCATTTCAAATCACTACGTTCCGGAGACATCAAATCAATTGGTG
AATAGAACGAGCCATGATTTATGCATAACCTAGTCGAAAATGTTTTGACC
TAACACATAAAAAGGACAAATAGGTAAAAAGCAAGAGTTTTTCTAAAAAC
GAAGGCTCGTAAAACAGCTTGGTTAGAAATGACATGACATCAATTCTTTT
CATTTCAAATTTTACAAAAACATTTAAAAAAAGAATAAATTACGAAAGGA
AACGATGTGTTCACTTACAGTATTTCATCTATATACAATAGCAAAAACAG
CAAAAACATAATATTTTACCAATTTAACTGAGATGTGAAAGTTCAAAGCA
TTGAGCCATCCTCGTAAGCTAAACTCGCTTTTTATAAGAATAAATTTTTC
AAAACAACGATGCTCGAAATCCTCAATAATGCTGAGCCTGGAATTGCTGA
ATTTGTAGCAAAAAAGTGTCAAAAGACAAAAATCGGCTATAAAGCGTAAC
ACCTTAAACACAATTTTGATAAAAAAATGCCCCACTTTTGTCCTAAAAAT
AAGACAAGATGAGAACATTATAATGCAATTTGAGGCTTTCAAAAAATTAG
AACAGCAAAATTTGAATAAAAATTTACTGGATCTTTAACAAAAAGTGTAT
ACCAAGTAGTACGAAGTTTCTAGTTCTCTTCGAGAATATCATTCCAATAG
AGCAATCTCGTCATTTAAAAAAGTTCATCATCTTCTTCTTCATCAACATT
ATCCATTCCAACTTCTTCGTAATCTTTTTCCAAGGCGGCTAAATCTTCAC
GAGCTTCGGAGAACTCTCCTTCTTCCATACCTAGATAAGGAAATCAGTAC
AGATAATAGTGTGAATAAACCAACCTACCTAATAGGGACAAGATGGAGTT
TTTACAACAACTCCATCTCATCTGAGCCAATCTCATTCGATTCAAGCAAC
AAGTAAAATCATTCACTGCCTTCAACTGCTCTGAGAGTGAGAAGGTTAAC
CAAAAAATTAAAAGCCCAATTAAAAGTAATACATGACCCGCTGTGAATAT
GTATTGATCAAAGCTTTGGTTGGTATTGGCGCCTCGTTAGAATGCTGAAA
TCTTGTATCCTTACAAGTCCGGCGGAACAACCGTTAAAGTGGGGAGGCTG
AAGGCTCAAAATGAGATAAAATTTGCTAGGAATTTGAGAAAAGAATTCTA
TTTGCTCAAAACTGGGGAGGCTGAAGTCTCCCCAGTCTCCCCAGTCTCCC
CGCTTCGGTCGGGCCTGTTATACCCTACCTGTAGCTTTGAAGAGGTCTGC
CATTAAGACTATGGTTTCCTTCCTCAATACAGTACTATACTGAGAATTCT
AACTCTTGAGACAGGGTTATTCTCATTATTCTCTTACCTTCACCGACATA
CCAATGTACAAAAGCACGTTTAGCATACATCAAATCGAACTTATGATCGA
GACTTGACCAGGCTTCAGCAATAGCAGTCGTATTAGCTAAGGAACAAACA
GCCCTCTTGACTTGAGCTAAATCACCTCCAGGAACAACGACAGGGGCATT
GTTATTGATCCCAACTTTAAATCCAGTTGGGCACCAATTCACAAACTGGA
TGGTTCGTTTGGTCTTGATTTGAGCAATTGCGGTGTTGACATCTTTGGGG
ACGATTTCGCCACGGTATAGAAGACAACAAGCCATGTATTTCCCATGTCG
AGGATCGCATTTCACCATTTGATTCTGTGGTTCAAAACAAGCATTGGTGA
TTTCTTGGACATTATGATTTTCGTGAGACGCTTTTTCAGCTGACATGATA
GGACCAAATGACGTAATTGGGAAATGGATTCTGGGGTATGGGACCAAGTT
TGTTTGGAACTCATTCAGATCGACGTTTAAAGCTCCTTCGAATCTCAAGG
AAGCTGTAACAGAGGAAACCACTTGACCAATCAAACGGTTCAGATTGAAA
TATGATGGACGATCAACACTTAAATTACGTTTGCAAATATCGTAGATAGC
TTCATTATCAACCATGAAAGCGACATCTGAGTGCTCCAAGGTAGTGTGGG
TTGTAAGAATAGCATTGTAAGGTTCAACGACAGCGGTGGAAACTTTTGGA
GAAGGGTAGATAGAAAATTCTAGCTTAGCTTTCTTTCCATATTCCACTGA
TAAACGTTCCATGAGAAGGGATGTGAAGCCGGACCCAGTTCCTCCTCCGT
ACGAATGAAAAATCAAGAACCCCTGAAGACCGGTGCAAAGATCGCATAAT
TTGCGGATTCGATCCAATGTTTGATCAATATACTCCTTCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00051320-exon-scaffold_200-1575043694:137546..137591 | TCONS_00051320-exon-scaffold_200-1575043694:137546..137591 | Clytia hemisphaerica | exon |
| TCONS_00051320-exon-scaffold_200-1575043694:129951..130813 | TCONS_00051320-exon-scaffold_200-1575043694:129951..130813 | Clytia hemisphaerica | exon |
| TCONS_00051320-exon-scaffold_200-1510915933:137546..137591 | TCONS_00051320-exon-scaffold_200-1510915933:137546..137591 | Clytia hemisphaerica | exon |
| TCONS_00051320-exon-scaffold_200-1510915933:129951..130813 | TCONS_00051320-exon-scaffold_200-1510915933:129951..130813 | Clytia hemisphaerica | exon |
| TCONS_00051320-exon-scaffold_200-1491911889:137546..137591 | TCONS_00051320-exon-scaffold_200-1491911889:137546..137591 | Clytia hemisphaerica | exon |
| TCONS_00051320-exon-scaffold_200-1491911889:129951..130813 | TCONS_00051320-exon-scaffold_200-1491911889:129951..130813 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_200 | supercontig | scaffold_200:129951..137591 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005525 | GTP binding |
| GO:0005200 | structural constituent of cytoskeleton |
| GO:0003924 | GTPase activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005874 | microtubule |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007017 | microtubule-based process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007017 |
microtubule-based process |
| cellular_component |
GO:0005874 |
microtubule |
| molecular_function |
GO:0003924 |
GTPase activity |
| molecular_function |
GO:0005525 |
GTP binding |
| molecular_function |
GO:0005200 |
structural constituent of cytoskeleton |
Blast
BLAST of TCONS_00051320 vs. Swiss-Prot (Human)
Match: TBA3C (Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C PE=1 SV=3) HSP 1 Score: 516.924 bits (1330), Expect = 0.000e+0 Identity = 249/302 (82.45%), Postives = 278/302 (92.05%), Query Frame = -1
Query: 4 GKEYIDQTLDRIRKLCDLCTGLQGFLIFHSYXXXXXXXXXXXLMERLSVEYGKKAKLEFSIYPSPKVSTAVVEPYNAILTTHTTLEHSDVAFMVDNEAIYDICKRNLSVDRPSYFNLNRLIGQVVSSVTASLRFEGALNVDLNEFQTNLVPYPRIHFPITSFGPIMSAEKASHENHNVQEITNACFEPQNQMVKCDPRHGKYMACCLLYRGEIVPKDVNTAIAQIKTKRTIQFVNWCPTGFKVGINNNAPVVVPGGDLAQVKRAVCSLANTTAIAEAWSSLDHKFDLMYAKRAFVHWYVGEG 909
GKE +D LDRIRKL DLCTGLQGFLIFHS+GGGTGSGF SLLMERLSV+YGKK+KLEF+IYP+P+VSTAVVEPYN+ILTTHTTLEHSD AFMVDNEAIYDIC+RNL ++RP+Y NLNRLIGQ+VSS+TASLRF+GALNVDL EFQTNLVPYPRIHFP+ ++ P++SAEKA HE +V EITNACFEP NQMVKCDPRHGKYMACC+LYRG++VPKDVN AIA IKTKRTIQFV+WCPTGFKVGIN P VVPGGDLA+V+RAVC L+NTTAIAEAW+ LDHKFDLMYAKRAFVHWYVGEG
Sbjct: 111 GKEIVDLVLDRIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG 412
The following BLAST results are available for this feature:
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