TCONS_00051341 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051341
Unique NameTCONS_00051341
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length463

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051341 ID=TCONS_00051341|Name=TCONS_00051341|organism=Clytia hemisphaerica|type=transcript|length=463bp
gtttcatcaGAACGCCATCGCGCATGCGATGTATccggagaaattcaatt
ttcaaaacaagagcagtgcgcaTATCCCAAAGAACAGGAGTTTAATGTGA
CGTGCAATATGtcgttttattatttttagggaTATAACAATTCTGGCCTT
TATTAAAACCTTTTCGGAATGTCAAAGTCTGAACGTCTTTTTTTCGCGAC
ATTTCAACGTAAACTTTTCGCGACATCTCAAATTCATTTTTCGCAAAGTC
TCAAAGTCATTTTTTCTCGACATCCCAAATTCAACTTTTCGCAACATCTC
AAAGTCAACTTTTCGCGACAtctcaaattcatttttcacGACATCCTAAG
AAAGTCAACTTTTCGAGATGTCTCAAAGCCAAATTTTCGCGATGTCTCAA
AGTCAAATTATCGCGACATCTCAAATTCATTTTTCGCGACATCTCAAAGT
CAACTTTTCGCGA
Run BLAST on NCBI

transcript from alignment at scaffold_200:39871..40333

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051341 ID=TCONS_00051341|Name=TCONS_00051341|organism=Clytia hemisphaerica|type=transcript|length=463bp|location=Sequence derived from alignment at scaffold_200:39871..40333 (Clytia hemisphaerica)
TCGCGAAAAGTTGACTTTGAGATGTCGCGAAAAATGAATTTGAGATGTCG
CGATAATTTGACTTTGAGACATCGCGAAAATTTGGCTTTGAGACATCTCG
AAAAGTTGACTTTCTTAGGATGTCgtgaaaaatgaatttgagaTGTCGCG
AAAAGTTGACTTTGAGATGTTGCGAAAAGTTGAATTTGGGATGTCGAGAA
AAAATGACTTTGAGACTTTGCGAAAAATGAATTTGAGATGTCGCGAAAAG
TTTACGTTGAAATGTCGCGAAAAAAAGACGTTCAGACTTTGACATTCCGA
AAAGGTTTTAATAAAGGCCAGAATTGTTATAtccctaaaaataataaaac
gaCATATTGCACGTCACATTAAACTCCTGTTCTTTGGGATAtgcgcactg
ctcttgttttgaaaattgaatttctccggATACATCGCATGCGCGATGGC
GTTCtgatgaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032528XLOC_032528Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051341-exon-scaffold_200-1491911889:39871..40333TCONS_00051341-exon-scaffold_200-1491911889:39871..40333Clytia hemisphaericaexon
TCONS_00051341-exon-scaffold_200-1510915933:39871..40333TCONS_00051341-exon-scaffold_200-1510915933:39871..40333Clytia hemisphaericaexon
TCONS_00051341-exon-scaffold_200-1575043694:39871..40333TCONS_00051341-exon-scaffold_200-1575043694:39871..40333Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_200supercontigscaffold_200:39871..40333 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.139676	0	0.316297	0.464171	1.13017	0.744227	1.61618	0.840583	1.17702	0.291587	0.283021	1.30233	0.557365	0	0.87244	0.340459	0.524272	0.322417	0.148479	0.62149	0.810281	1.38329	0	0	0.74982	0.535358	0	1.022	0.310059	0.157951
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051341 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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