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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051346 ID=TCONS_00051346|Name=TCONS_00051346|organism=Clytia hemisphaerica|type=transcript|length=2026bp
tcaaacAATACATACACAACAATTATGCTATACAGGATCAGGATTGATAG
TAATAGTTATGATATCCTTGTTTATCTTGTGATGCCATTGTCAAAACATT
ACAATAGAACTTCCAAGaagaaaaagtatcagaaaaaacatttttgacta
ATATATTATTGCTAAAAGTAAAAAgacatttgaatttttatgtattTCCA
TTTGTCTCGAACTTCCAACACCtcgataaaaacaaaacaaaagaaaaaag
aaaataagatgGCCACGGTTTCCCCGATTCTTGTCCATAAATATACAGTG
AAAAAAAAAGCCTCTAGAAAAGGTTTGAAAAGATATTAAGTCTTCAAATA
AAATACACTAGGCAGTAAAATTATTCTACTTTCACCATTTTCCAAGACAA
CTTTGAGACGCAACGCATCTCCTCTCAAActcaaaaaatcataacagtcc
aaaaaacaataaaatttcagagAAAACCCCAAATATCTCCTGTTTTAGCC
ACGCTTtctgtttgattttttctattattcaaaGAAGAGAACGCGGAGCG
GAACAGTCAGTTCATGACGTGGCGCTCATGCAGTCAACATGGCggaggaa
aagaaaattttgaaatatttctttttaaactTCAGAGGTTTTCAAGATTG
TTTAAAGAAACATCAAAGACAAAGTTGTCAAACAAAAGATAAGTACTTTC
TTTCTACTCtttatttattatattttcTGTCATAAATACACTGCAAGCTG
CTtgatttttccaggaaaaatttaaaaatgcctaATTCTGAGAAATCTCT
ATCGGAATTAAATAAACGTTTGAAAGATATTCAATCCAAAATAAAGGATA
TGAAGGATAAACAACAGGAAAGAACAAACAGTTTGCGGNTTTTCcaggaa
aaatttaaaaatgcctaATTCTGAGAAATCTCTATCGGAATTAAATAAAC
GTTTGAAAGATATTAAATCCAAAATAAAGGATATGAAGGATAAACAACAG
GAAAGATCAAACAGTTTGCGATCGAAATCAGATGATGATGGTGAGGAATC
CTCATCATCATCACCCTCAACAAGAAGAACCAAACATAAAcataagaaaa
agaagaaaaaacatagCTGAAAACGTAAATCCGGGGGAGAAGAGGAACAA
CCTGCATCAGTGCATGCAAAAAGGAAGTGCATCCCAGTAAGATCGATACA
TACTAGCCCAGTGCGGCAAAATCATAGCATAAATCATAACATCGGCTGGG
AGACAGACTCGGACAACCCAGCTCCTTTTAACGAAATTGACTTATCAGAG
CCAGAGGAAACATTCAATGCAAGGGCTAGCCAAACAGATGGCTATGAGTC
ACTCAACGAAAATGAGAATCAGAACCCTGTAGTTTTAGTAGATAAGGAAC
AGCAAAACAATGGGGAACTAAAAGAGCCAGAACTTGAATTAGATGTCGAA
AACCTTGTCTCTGTGTCAACTGAGGAAGAAAGATCGAGCCCTCTTGACGA
AAAATTGGCTCAGTTAATTAAGACAAACTGGGACAGTGAGAAGCCTTTTG
AGAacatgaaaaagattttcaaaacataCCCTTGCCCAGAAAACTGTACC
CTTGACCCCCCGAAAGTAAATGGAAAATCTTGAATAGTGCCCAAAGAAAG
TCAGATGTTAAACTAGTTACCATACagaaatcactgaaaaaaaCCCTGAA
TGTAAATCTAAAAATCTTAGAAGAAGTTAAAAATGGTAACGTATCTGTTC
AATCTCTGGCACAGAAAACTGTGGACATGGCTGCTATTTTGGGCCATGCC
TCCCACGAAATTTCACTGAAACGCAGAATCTTTATTTGTGGCAATATCAA
TCCTCAATACAAGGACTTTTGTGCACAGTCACAGCCAATAACTTCAAAAC
TGTTTGGGGATGATCTCCCAAAACTAGTTAAAGAGTTGAATCTCACAAAT
AAAATAAGCAATAAATATGCTAAATCATCAACTACAAAAAGCTATGACAA
ACCCCAGAGAGGGCAAAATTACAACA Run BLAST on NCBI transcript from alignment at scaffold_200:178324..180349 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051346 ID=TCONS_00051346|Name=TCONS_00051346|organism=Clytia hemisphaerica|type=transcript|length=2026bp|location=Sequence derived from alignment at scaffold_200:178324..180349 (Clytia hemisphaerica)
TGTTGTAATTTTGCCCTCTCTGGGGTTTGTCATAGCTTTTTGTAGTTGAT
GATTTAGCATATTTATTGCTTATTTTATTTGTGAGATTCAACTCTTTAAC
TAGTTTTGGGAGATCATCCCCAAACAGTTTTGAAGTTATTGGCTGTGACT
GTGCACAAAAGTCCTTGTATTGAGGATTGATATTGCCACAAATAAAGATT
CTGCGTTTCAGTGAAATTTCGTGGGAGGCATGGCCCAAAATAGCAGCCAT
GTCCACAGTTTTCTGTGCCAGAGATTGAACAGATACGTTACCATTTTTAA
CTTCTTCTAAGATTTTTAGATTTACATTCAGGGtttttttcagtgatttc
tGTATGGTAACTAGTTTAACATCTGACTTTCTTTGGGCACTATTCAAGAT
TTTCCATTTACTTTCGGGGGGTCAAGGGTACAGTTTTCTGGGCAAGGGta
tgttttgaaaatctttttcatgtTCTCAAAAGGCTTCTCACTGTCCCAGT
TTGTCTTAATTAACTGAGCCAATTTTTCGTCAAGAGGGCTCGATCTTTCT
TCCTCAGTTGACACAGAGACAAGGTTTTCGACATCTAATTCAAGTTCTGG
CTCTTTTAGTTCCCCATTGTTTTGCTGTTCCTTATCTACTAAAACTACAG
GGTTCTGATTCTCATTTTCGTTGAGTGACTCATAGCCATCTGTTTGGCTA
GCCCTTGCATTGAATGTTTCCTCTGGCTCTGATAAGTCAATTTCGTTAAA
AGGAGCTGGGTTGTCCGAGTCTGTCTCCCAGCCGATGTTATGATTTATGC
TATGATTTTGCCGCACTGGGCTAGTATGTATCGATCTTACTGGGATGCAC
TTCCTTTTTGCATGCACTGATGCAGGTTGTTCCTCTTCTCCCCCGGATTT
ACGTTTTCAGctatgttttttcttctttttcttatgTTTATGTTTGGTTC
TTCTTGTTGAGGGTGATGATGATGAGGATTCCTCACCATCATCATCTGAT
TTCGATCGCAAACTGTTTGATCTTTCCTGTTGTTTATCCTTCATATCCTT
TATTTTGGATTTAATATCTTTCAAACGTTTATTTAATTCCGATAGAGATT
TCTCAGAATtaggcatttttaaatttttcctgGAAAANCCGCAAACTGTT
TGTTCTTTCCTGTTGTTTATCCTTCATATCCTTTATTTTGGATTGAATAT
CTTTCAAACGTTTATTTAATTCCGATAGAGATTTCTCAGAATtaggcatt
tttaaatttttcctggaaaaatcaAGCAGCTTGCAGTGTATTTATGACAg
aaaatataataaataaaGAGTAGAAAGAAAGTACTTATCTTTTGTTTGAC
AACTTTGTCTTTGATGTTTCTTTAAACAATCTTGAAAACCTCTGAagttt
aaaaagaaatatttcaaaattttcttttcctccGCCATGTTGACTGCATG
AGCGCCACGTCATGAACTGACTGTTCCGCTCCGCGTTCTCTTCtttgaat
aatagaaaaaatcaaacagaAAGCGTGGCTAAAACAGGAGATATTTGGGG
TTTTctctgaaattttattgttttttggactgttatgattttttgagTTT
GAGAGGAGATGCGTTGCGTCTCAAAGTTGTCTTGGAAAATGGTGAAAGTA
GAATAATTTTACTGCCTAGTGTATTTTATTTGAAGACTTAATATCTTTTC
AAACCTTTTCTAGAGGCTTTTTTTTTCACTGTATATTTATGGACAAGAAT
CGGGGAAACCGTGGCcatcttattttcttttttcttttgttttgttttta
tcgaGGTGTTGGAAGTTCGAGACAAATGGAaatacataaaaattcaaatg
tcTTTTTACTTTTAGCAATAATATATtagtcaaaaatgttttttctgata
ctttttcttCTTGGAAGTTCTATTGTAATGTTTTGACAATGGCATCACAA
GATAAACAAGGATATCATAACTATTACTATCAATCCTGATCCTGTATAGC
ATAATTGTTGTGTATGTATTgtttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051346-exon-scaffold_200-1491911889:178324..180349 | TCONS_00051346-exon-scaffold_200-1491911889:178324..180349 | Clytia hemisphaerica | exon |
| TCONS_00051346-exon-scaffold_200-1510915933:178324..180349 | TCONS_00051346-exon-scaffold_200-1510915933:178324..180349 | Clytia hemisphaerica | exon |
| TCONS_00051346-exon-scaffold_200-1575043694:178324..180349 | TCONS_00051346-exon-scaffold_200-1575043694:178324..180349 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_200 | supercontig | scaffold_200:178324..180349 . |
Blast
The following BLAST results are available for this feature:
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