TCONS_00051347 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051347
Unique NameTCONS_00051347
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length242

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051347 ID=TCONS_00051347|Name=TCONS_00051347|organism=Clytia hemisphaerica|type=transcript|length=242bp
CACCATTTTCCAAGACAACTTTGAGACGCAACGCATCTCCTCTCAAActc
aaaaaatcataacagtccaaaaaacaataaaatttcagagAAAACCCCAA
ATATCTCCTGTTTTAGCCACGCTTtctgtttgattttttctattattcaa
aGAAGAGAACGCGGAGCGGAACAGTCAGTTCATGACGTGGCGCTCATGCA
GTCAACATGGCggaggaaaagaaaattttgaaatatttcttt
Run BLAST on NCBI

transcript from alignment at scaffold_200:179726..179967

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051347 ID=TCONS_00051347|Name=TCONS_00051347|organism=Clytia hemisphaerica|type=transcript|length=242bp|location=Sequence derived from alignment at scaffold_200:179726..179967 (Clytia hemisphaerica)
aaagaaatatttcaaaattttcttttcctccGCCATGTTGACTGCATGAG
CGCCACGTCATGAACTGACTGTTCCGCTCCGCGTTCTCTTCtttgaataa
tagaaaaaatcaaacagaAAGCGTGGCTAAAACAGGAGATATTTGGGGTT
TTctctgaaattttattgttttttggactgttatgattttttgagTTTGA
GAGGAGATGCGTTGCGTCTCAAAGTTGTCTTGGAAAATGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032532XLOC_032532Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051347-exon-scaffold_200-1491911889:179726..179967TCONS_00051347-exon-scaffold_200-1491911889:179726..179967Clytia hemisphaericaexon
TCONS_00051347-exon-scaffold_200-1510915933:179726..179967TCONS_00051347-exon-scaffold_200-1510915933:179726..179967Clytia hemisphaericaexon
TCONS_00051347-exon-scaffold_200-1575043694:179726..179967TCONS_00051347-exon-scaffold_200-1575043694:179726..179967Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_200supercontigscaffold_200:179726..179967 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.33451	0	0.616546	0	0.676847	0.201372	0.785928	0.740285	0	1.43811	1.94984	0	0	3.19618	2.05147	1.36496	2.50448	0.119386	0.21764	1.9607	2.94317	0	0	1.34837	0	0	0.132095	3.10893	2.67335	3.45563
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051347 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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