TCONS_00051351 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051351
Unique NameTCONS_00051351
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length521

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051351 ID=TCONS_00051351|Name=TCONS_00051351|organism=Clytia hemisphaerica|type=transcript|length=521bp
tcaaacAATACATACACAACAATTATGCTATACAGGATCAGGATTGATAG
TAATAGTTATGATATCCTTGTTTATCTTGTGATGCCATTGTCAAAACATT
ACAATAGAACTTCCAAGaagaaaaagtatcagaaaaaacatttttgacta
ATATATTATTGCTAAAAGTAAAAAgacatttgaatttttatgtattTCCA
TTTCTCTCGAACTTCCAACAcctcaataaaaacaaaacaaaagaaaacaa
gatGGCGACGGTTTCCTCGATTCTTGTCCATAAATATACAGTGAAAAAAA
AAGCCTCTAGAAAAGGTTTGAAAAGATATTAAGTCTTCAAATAAAATGCA
CTAGGCAGTAAAATTATTCTACTTTCACTATTTTCCAAGACAAGTTTGAG
ACGCAATGCATCTCCTCTCAAActcaaaaaatcataacagtccaaaaaac
aataaaatttcagagAAAACCCCAAATATCTCCTGTTTTAGCCACGCTTt
ctgtttgattttttctattat
Run BLAST on NCBI

transcript from alignment at scaffold_200:202681..203201

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051351 ID=TCONS_00051351|Name=TCONS_00051351|organism=Clytia hemisphaerica|type=transcript|length=521bp|location=Sequence derived from alignment at scaffold_200:202681..203201 (Clytia hemisphaerica)
ataatagaaaaaatcaaacagaAAGCGTGGCTAAAACAGGAGATATTTGG
GGTTTTctctgaaattttattgttttttggactgttatgattttttgagT
TTGAGAGGAGATGCATTGCGTCTCAAACTTGTCTTGGAAAATAGTGAAAG
TAGAATAATTTTACTGCCTAGTGCATTTTATTTGAAGACTTAATATCTTT
TCAAACCTTTTCTAGAGGCTTTTTTTTTCACTGTATATTTATGGACAAGA
ATCGAGGAAACCGTCGCCatcttgttttcttttgttttgtttttattgag
gTGTTGGAAGTTCGAGAGAAATGGAaatacataaaaattcaaatgtcTTT
TTACTTTTAGCAATAATATATtagtcaaaaatgttttttctgatactttt
tcttCTTGGAAGTTCTATTGTAATGTTTTGACAATGGCATCACAAGATAA
ACAAGGATATCATAACTATTACTATCAATCCTGATCCTGTATAGCATAAT
TGTTGTGTATGTATTgtttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032536XLOC_032536Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051351-exon-scaffold_200-1491911889:202681..203201TCONS_00051351-exon-scaffold_200-1491911889:202681..203201Clytia hemisphaericaexon
TCONS_00051351-exon-scaffold_200-1510915933:202681..203201TCONS_00051351-exon-scaffold_200-1510915933:202681..203201Clytia hemisphaericaexon
TCONS_00051351-exon-scaffold_200-1575043694:202681..203201TCONS_00051351-exon-scaffold_200-1575043694:202681..203201Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_200supercontigscaffold_200:202681..203201 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.607839	0	0.169174	0.22104	0.539819	0.121175	0.926133	0.674276	1.07306	0.275391	1.4674	0	0.338607	0.412724	0.426906	0.53823	0.324166	0.614674	0.161658	0.220313	1.01411	0.336094	0.251099	0.360275	0	0.114481	0.240093	0.409461	0.854985	0.791975
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051351 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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