TCONS_00051355 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051355
Unique NameTCONS_00051355
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length666

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051355 ID=TCONS_00051355|Name=TCONS_00051355|organism=Clytia hemisphaerica|type=transcript|length=666bp
GTTTCATATTCTTTGGAAAAGTAAAGTCTTGCACCACCTTTGTTAGAGTC
AGTGCAGCAGTCATAATGATTATAGCCTTGAATTTTAGCAGCATTTTCTG
ctttttctttgtctttgaaGCCAGTTTCTGTTATTCCAATAATTTGAAAA
GGGTTAACTCTGTTCGAGATTATGTTAATTAGATTTTGTTTATGTAATTC
TAGAGATGCGATATTCATATGGAATGTAGATAATGAATTCTTGGAAAGTT
TTTCAGcctttttgttttgttcactTAGTGAGAGATAGGGACAATGTATG
TCTTGCCCCATCTCAGTTTCTGCAAGTGCAAGATCAATGTCTTTAAAGAA
TTGAATGTTTAAATTGTTTTCAGGGTCAGAAAAAAGAAGATGATCACAAC
ACTTACCTTGGAGAGTTAGTTTGAGTCCTTCATCAGTGAGGCTGTCAAAG
ACGGCTTCCTTCTTGAAACATTTTTGGCAGAGCCATGTATCATCTGGATT
TGAATCTAAAAGCTTTTGGTAGTCAGAAGGTGATGTGTTATTACATTTAG
CATGAATCCAAAAACGACAATTATTACAGTAGATACCTCTATGAGTGGTT
GCAACTGGGTTGTAGCAGACCCCACAAGGGAAGGCAACCATGGCAGAGAG
AGGGAGGAGaaggaga
Run BLAST on NCBI

protein sequence of TCONS_00051355-protein

>TCONS_00051355-protein ID=TCONS_00051355-protein|Name=TCONS_00051355-protein|organism=Clytia hemisphaerica|type=polypeptide|length=221bp
LLLLPLSAMVAFPCGVCYNPVATTHRGIYCNNCRFWIHAKCNNTSPSDYQ
KLLDSNPDDTWLCQKCFKKEAVFDSLTDEGLKLTLQGKCCDHLLFSDPEN
NLNIQFFKDIDLALAETEMGQDIHCPYLSLSEQNKKAEKLSKNSLSTFHM
NIASLELHKQNLINIISNRVNPFQIIGITETGFKDKEKAENAAKIQGYNH
YDCCTDSNKGGARLYFSKEYE
Run BLAST on NCBI

transcript from alignment at scaffold_200:216564..217229

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051355 ID=TCONS_00051355|Name=TCONS_00051355|organism=Clytia hemisphaerica|type=transcript|length=666bp|location=Sequence derived from alignment at scaffold_200:216564..217229 (Clytia hemisphaerica)
tctccttCTCCTCCCTCTCTCTGCCATGGTTGCCTTCCCTTGTGGGGTCT
GCTACAACCCAGTTGCAACCACTCATAGAGGTATCTACTGTAATAATTGT
CGTTTTTGGATTCATGCTAAATGTAATAACACATCACCTTCTGACTACCA
AAAGCTTTTAGATTCAAATCCAGATGATACATGGCTCTGCCAAAAATGTT
TCAAGAAGGAAGCCGTCTTTGACAGCCTCACTGATGAAGGACTCAAACTA
ACTCTCCAAGGTAAGTGTTGTGATCATCTTCTTTTTTCTGACCCTGAAAA
CAATTTAAACATTCAATTCTTTAAAGACATTGATCTTGCACTTGCAGAAA
CTGAGATGGGGCAAGACATACATTGTCCCTATCTCTCACTAagtgaacaa
aacaaaaaggCTGAAAAACTTTCCAAGAATTCATTATCTACATTCCATAT
GAATATCGCATCTCTAGAATTACATAAACAAAATCTAATTAACATAATCT
CGAACAGAGTTAACCCTTTTCAAATTATTGGAATAACAGAAACTGGCttc
aaagacaaagaaaaagCAGAAAATGCTGCTAAAATTCAAGGCTATAATCA
TTATGACTGCTGCACTGACTCTAACAAAGGTGGTGCAAGACTTTACTTTT
CCAAAGAATATGAAAC

Coding sequence (CDS) from alignment at scaffold_200:216564..217229

>TCONS_00051355 ID=TCONS_00051355|Name=TCONS_00051355|organism=Clytia hemisphaerica|type=CDS|length=663bp|location=Sequence derived from alignment at scaffold_200:216564..217229 (Clytia hemisphaerica)
ctccttCTCCTCCCTCTCTCTGCCATGGTTGCCTTCCCTTGTGGGGTCTG
CTACAACCCAGTTGCAACCACTCATAGAGGTATCTACTGTAATAATTGTC
GTTTTTGGATTCATGCTAAATGTAATAACACATCACCTTCTGACTACCAA
AAGCTTTTAGATTCAAATCCAGATGATACATGGCTCTGCCAAAAATGTTT
CAAGAAGGAAGCCGTCTTTGACAGCCTCACTGATGAAGGACTCAAACTAA
CTCTCCAAGGTAAGTGTTGTGATCATCTTCTTTTTTCTGACCCTGAAAAC
AATTTAAACATTCAATTCTTTAAAGACATTGATCTTGCACTTGCAGAAAC
TGAGATGGGGCAAGACATACATTGTCCCTATCTCTCACTAagtgaacaaa
acaaaaaggCTGAAAAACTTTCCAAGAATTCATTATCTACATTCCATATG
AATATCGCATCTCTAGAATTACATAAACAAAATCTAATTAACATAATCTC
GAACAGAGTTAACCCTTTTCAAATTATTGGAATAACAGAAACTGGCttca
aagacaaagaaaaagCAGAAAATGCTGCTAAAATTCAAGGCTATAATCAT
TATGACTGCTGCACTGACTCTAACAAAGGTGGTGCAAGACTTTACTTTTC
CAAAGAATATGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032540XLOC_032540Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051355-proteinTCONS_00051355-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051355-exon-scaffold_200-1491911889:216564..217229TCONS_00051355-exon-scaffold_200-1491911889:216564..217229Clytia hemisphaericaexon
TCONS_00051355-exon-scaffold_200-1510915933:216564..217229TCONS_00051355-exon-scaffold_200-1510915933:216564..217229Clytia hemisphaericaexon
TCONS_00051355-exon-scaffold_200-1575043694:216564..217229TCONS_00051355-exon-scaffold_200-1575043694:216564..217229Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_200supercontigscaffold_200:216564..217229 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0827281	0	0	0	0	0	0	0.0516305	0	0	0	0.0582779	0	0	0	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR019787Znf_PHD-finger
IPR011011Znf_FYVE_PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051355 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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