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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051357 ID=TCONS_00051357|Name=TCONS_00051357|organism=Clytia hemisphaerica|type=transcript|length=2048bp
TTTCGGTGCATTTGTTCTATTCCTTGACTTTTTATTTCTCGCAAGTCTTA
TATTGCAGTAACGTCAAACCCTTTTATATCTCTCATAAGAAAAATTTCTA
AAATTTTGGGACAAGTTTTATTaatatctcttttatcacctTTTTAGTAA
CGGTatagaataaaataaaagtacaaTATATGTAAGTCGTTCTGCTAAAA
AATAACAAGTTTTcgttttcggaaaaaaaaactGAACTAGATAAAAAAAT
GTATCTAAGCAGATCTGAAAAAAGGCGAAACTAGGGCCGCAAGCCAGCAT
GGGGGCAGTAGAAATGTGAAGTAACACAGCAAGGAGGTAAAATCCGAGAG
GCTAGACTAGGCCACTCAAAGAGCAAAAAGGCTCGGATAGGAAGGAACTC
AGACGGCCACAGTGCATTTACTCTATTGGTATTCTTATTTGCTTATTTAT
ATCTGATCCACGTGCTTTTTCTTCGGTActtgttcttttgaaaaaaggtc
aAGCTTCATAAAGACGTCCAAAGAACGTTTTCTGACTGTTCAGTGACGTC
ATTAAGTTACTAatgtaattttttataagaaccagtaaattttcctgagg
ctcggctgttcttattttttggcactttcagcctcaaattgttcttattt
tttgaggtatttttaggttattttttctatttttgccgtattttacctta
tttgaaCCCATTTTCGACAAAAAATTAGACATCCCAGCCTTGGgcttgtt
cttaaattgttcttaatttttggcatttttgagcctcattgttcttataa
aatttttcttataaaaaaaagtgtagggaaatgaaaattgaaaatttgaa
aatctacaaaattgaTTATTGAATGGAAAAATCAAGAAATGGTCAAAAAT
CAATTCAATTTGTGCTCGAAAATTGAATAAAGCTCAAATGATCGTTAGGT
ACACGGACGATTGGGTACTGGCTAATAATGTTTCATggtccaaaaaaatt
aattactgCGAAATTTAGTTCCGTTAAGGTATGTACAAAAACAGACAGAC
TGACCCATGTCATGGAAAACTTGCTGAAGTCCAGCTAAGTGCTGGGCCAA
AAAAAATATAACCCGTGTCACTTTTTCCATCGTTTAAGTGAAGTATTGAG
TACTAGTACTGagtagaatattttgaaaattttaggaaGACTCTCTACTG
GTGCATATAATCATTAAACGTTTATCACTTTACGAATAAAATCATCACCT
TTTATATTGTATAAAAAAACTGATGAACgtcttgaaatatattgagttTC
CTTTTCAGATTTGTTTGTTTAAAGCGTTTAAAGGCCCCGATACACTTGTC
AATAATAaatcaatattcaaaatctgttaCTAAATATagcaacaaaaata
ttattgactCAATATTGATCGAGTCCTGACActtatcaattttaaaaata
tattagtTAATAATAtagaattatttatttttacactggagggtactagg
gttggggatgctgggtatgtgcgaacCACGACCTACGAACCCTGACCCTA
GAGAAACTGAATTTTGttaaaaaggtgacccttagagattTCAtcgattt
tcaagaaaatatgtgcaatttaaaaaaattttcttaaaaatatttgaaac
atttctatgatttttaaaaatacttttgacTTTTCGCCATGTTTTGACTC
GTATtgtgaaaaacccgaccttagAGAGTAGAGAGACTATTTACACAAAT
GTCGACTTAAGTTTGTGACTTTTGCCTGGATGTTTCGTGAAATATTAGCA
GTAGCAGCAGTACCTATAATATCataattttctctcttttttacgaatcg
attttcttatatttctcTGATAAGGAAGGTTATCAATTGGTCTTGTTTAT
CATTTCGTACAATTTCATTTTATGGCGAAATTTTTCGATCTTTGATCGTC
ttgttaactttgtatcataactttatattgaataaatattttagtgaaat
ttcttcacagtgatgacctcctaagatcaaagaatctctccagtgaaa Run BLAST on NCBI transcript from alignment at scaffold_200:232498..234545 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051357 ID=TCONS_00051357|Name=TCONS_00051357|organism=Clytia hemisphaerica|type=transcript|length=2048bp|location=Sequence derived from alignment at scaffold_200:232498..234545 (Clytia hemisphaerica)
tttcactggagagattctttgatcttaggaggtcatcactgtgaagaaat
ttcactaaaatatttattcaatataaagttatgatacaaagttaacaaGA
CGATCAAAGATCGAAAAATTTCGCCATAAAATGAAATTGTACGAAATGAT
AAACAAGACCAATTGATAACCTTCCTTATCAgagaaatataagaaaatcg
attcgtaaaaaagagagaaaattatGATATTATAGGTACTGCTGCTACTG
CTAATATTTCACGAAACATCCAGGCAAAAGTCACAAACTTAAGTCGACAT
TTGTGTAAATAGTCTCTCTACTCTctaaggtcgggtttttcacaATACGA
GTCAAAACATGGCGAAAAgtcaaaagtatttttaaaaatcatagaaatgt
ttcaaatatttttaagaaaatttttttaaattgcacatattttcttgaaa
atcgaTGAaatctctaagggtcacctttttaaCAAAATTCAGTTTCTCTA
GGGTCAGGGTTCGTAGGTCGTGgttcgcacatacccagcatccccaaccc
tagtaccctccagtgtaaaaataaataattctaTATTATTAactaatata
tttttaaaattgataagTGTCAGGACTCGATCAATATTGagtcaataata
tttttgttgctATATTTAGtaacagattttgaatattgattTATTATTGA
CAAGTGTATCGGGGCCTTTAAACGCTTTAAACAAACAAATCTGAAAAGGA
aactcaatatatttcaagacGTTCATCAGTTTTTTTATACAATATAAAAG
GTGATGATTTTATTCGTAAAGTGATAAACGTTTAATGATTATATGCACCA
GTAGAGAGTCttcctaaaattttcaaaatattctactCAGTACTAGTACT
CAATACTTCACTTAAACGATGGAAAAAGTGACACGGGTTATATTTTTTTT
GGCCCAGCACTTAGCTGGACTTCAGCAAGTTTTCCATGACATGGGTCAGT
CTGTCTGTTTTTGTACATACCTTAACGGAACTAAATTTCGcagtaattaa
tttttttggaccATGAAACATTATTAGCCAGTACCCAATCGTCCGTGTAC
CTAACGATCATTTGAGCTTTATTCAATTTTCGAGCACAAATTGAATTGAT
TTTTGACCATTTCTTGATTTTTCCATTCAATAAtcaattttgtagatttt
caaattttcaattttcatttccctacacttttttttataagaaaaatttt
ataagaacaatgaggctcaaaaatgccaaaaattaagaacaatttaagaa
caagcCCAAGGCTGGGATGTCTAATTTTTTGTCGAAAATGGGttcaaata
aggtaaaatacggcaaaaatagaaaaaataacctaaaaatacctcaaaaa
ataagaacaatttgaggctgaaagtgccaaaaaataagaacagccgagcc
tcaggaaaatttactggttcttataaaaaattacatTAGTAACTTAATGA
CGTCACTGAACAGTCAGAAAACGTTCTTTGGACGTCTTTATGAAGCTtga
ccttttttcaaaagaacaagTACCGAAGAAAAAGCACGTGGATCAGATAT
AAATAAGCAAATAAGAATACCAATAGAGTAAATGCACTGTGGCCGTCTGA
GTTCCTTCCTATCCGAGCCTTTTTGCTCTTTGAGTGGCCTAGTCTAGCCT
CTCGGATTTTACCTCCTTGCTGTGTTACTTCACATTTCTACTGCCCCCAT
GCTGGCTTGCGGCCCTAGTTTCGCCTTTTTTCAGATCTGCTTAGATACAT
TTTTTTATCTAGTTCagtttttttttccgaaaacgAAAACTTGTTATTTT
TTAGCAGAACGACTTACATATAttgtacttttattttattctatACCGTT
ACTAAAAaggtgataaaagagatattAATAAAACTTGTCCCAAAATTTTA
GAAATTTTTCTTATGAGAGATATAAAAGGGTTTGACGTTACTGCAATATA
AGACTTGCGAGAAATAAAAAGTCAAGGAATAGAACAAATGCACCGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051357-exon-scaffold_200-1491911889:232498..234545 | TCONS_00051357-exon-scaffold_200-1491911889:232498..234545 | Clytia hemisphaerica | exon |
| TCONS_00051357-exon-scaffold_200-1510915933:232498..234545 | TCONS_00051357-exon-scaffold_200-1510915933:232498..234545 | Clytia hemisphaerica | exon |
| TCONS_00051357-exon-scaffold_200-1575043694:232498..234545 | TCONS_00051357-exon-scaffold_200-1575043694:232498..234545 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_200 | supercontig | scaffold_200:232498..234545 . |
Blast
The following BLAST results are available for this feature:
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