TCONS_00051359 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051359
Unique NameTCONS_00051359
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length420

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051359 ID=TCONS_00051359|Name=TCONS_00051359|organism=Clytia hemisphaerica|type=transcript|length=420bp
CTCATTCCAGCCATtacagggggtaaaattgtAAATGACTTAGAAAGAGA
CTTGTTATCATTACCACCTAGACTGGGAGGCCTCGGTCTCAAAAACGTAT
GTGAGATCGCACCCATCGAACACGAAAACTCGAGACAATTCACCAAACAT
CTACAAAACCAAATCTTGAACCTCCATCCACCAAATGACaatgaaacaaa
aactaaaGCAGCGATCAAAACTGAGAAAATCCAAAGAAATCACGACAAGC
AAGATCGTATCAGGGCGGAAATGACTGATGATCAAAAACGTATCCACGAA
GCCAGTTGCTATGGTTGACCAACCTTCCAATCAGAGATCAAGGCTATGAT
CTTAACAAGGAACAGTTTCACGATGCACTGCGAATTCGTTATGACTGGAA
TATCCCTCGTCTACCAAGTC
Run BLAST on NCBI

protein sequence of TCONS_00051359-protein

>TCONS_00051359-protein ID=TCONS_00051359-protein|Name=TCONS_00051359-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
LIPAITGGKIVNDLERDLLSLPPRLGGLGLKNVCEIAPIEHENSRQFTKH
LQNQILNLHPPNDNETKTKAAIKTEKIQRNHDKQDRIRAEMTDDQKRIHE
ASCYG
Run BLAST on NCBI

transcript from alignment at scaffold_200:249872..250291

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051359 ID=TCONS_00051359|Name=TCONS_00051359|organism=Clytia hemisphaerica|type=transcript|length=420bp|location=Sequence derived from alignment at scaffold_200:249872..250291 (Clytia hemisphaerica)
GACTTGGTAGACGAGGGATATTCCAGTCATAACGAATTCGCAGTGCATCG
TGAAACTGTTCCTTGTTAAGATCATAGCCTTGATCTCTGATTGGAAGGTT
GGTCAACCATAGCAACTGGCTTCGTGGATACGTTTTTGATCATCAGTCAT
TTCCGCCCTGATACGATCTTGCTTGTCGTGATTTCTTTGGATTTTCTCAG
TTTTGATCGCTGCtttagtttttgtttcattGTCATTTGGTGGATGGAGG
TTCAAGATTTGGTTTTGTAGATGTTTGGTGAATTGTCTCGAGTTTTCGTG
TTCGATGGGTGCGATCTCACATACGTTTTTGAGACCGAGGCCTCCCAGTC
TAGGTGGTAATGATAACAAGTCTCTTTCTAAGTCATTTacaattttaccc
cctgtaATGGCTGGAATGAG

Coding sequence (CDS) from alignment at scaffold_200:249872..250291

>TCONS_00051359 ID=TCONS_00051359|Name=TCONS_00051359|organism=Clytia hemisphaerica|type=CDS|length=318bp|location=Sequence derived from alignment at scaffold_200:249872..250291 (Clytia hemisphaerica)
TCAACCATAGCAACTGGCTTCGTGGATACGTTTTTGATCATCAGTCATTT
CCGCCCTGATACGATCTTGCTTGTCGTGATTTCTTTGGATTTTCTCAGTT
TTGATCGCTGCtttagtttttgtttcattGTCATTTGGTGGATGGAGGTT
CAAGATTTGGTTTTGTAGATGTTTGGTGAATTGTCTCGAGTTTTCGTGTT
CGATGGGTGCGATCTCACATACGTTTTTGAGACCGAGGCCTCCCAGTCTA
GGTGGTAATGATAACAAGTCTCTTTCTAAGTCATTTacaattttaccccc
tgtaATGGCTGGAATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032544XLOC_032544Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051359-exon-scaffold_200-1491911889:249872..250291TCONS_00051359-exon-scaffold_200-1491911889:249872..250291Clytia hemisphaericaexon
TCONS_00051359-exon-scaffold_200-1510915933:249872..250291TCONS_00051359-exon-scaffold_200-1510915933:249872..250291Clytia hemisphaericaexon
TCONS_00051359-exon-scaffold_200-1575043694:249872..250291TCONS_00051359-exon-scaffold_200-1575043694:249872..250291Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051359-proteinTCONS_00051359-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_200supercontigscaffold_200:249872..250291 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.280547	0.193188	0.659139	0	0	0.618829	0.281606	0	0.184713	0	0.170349	0.206875	0.25219	0.552431	0.217743	0.106221	1.16162	0.884913	0.893688	0.590445	0.650273	0.758846	0.229634	0.903384	0.419182	0.186229	2.12063	2.26731	9.13513	3.49342
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051359 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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