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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051368 ID=TCONS_00051368|Name=TCONS_00051368|organism=Clytia hemisphaerica|type=transcript|length=519bp
CTTCTGTGaattttaataacattttattatttatttacagtgaaaaacat
aaataataattatactcaaatttggaaaataaaattgtGATGGATTGGTA
GAGAATGTCTTCTTTGGGTCGTGTTGTATATCGAAGATTTTGTTCAATGA
TGAATCACCAAGTTTTACATAAAGAAGGATTGTTTTATATCCCACTTGAA
AAGGGACAAGCTGTTTTAGAATACACTTTGAAAGATGGAATAATTGATAT
GTACCACACAGGAGTACCCAGCTTTTACCGTGGTCAAGGAATCGCCAAAA
TATTGGTTCAGGATGCCATGAAGTACGTGGAAGCAGAGAAACTGACAGTC
AAACCAACATGTAGCTATGTCTTGAAATATGTCAATGAAAATCCAAACCC
CAACATCAAAGTTTGCGAATTATAACCAAACAGTCTCCTAAAATTACGTG
ATTATGTTTACAACAATTTTATATAGAAAATTTTAGAACACAtttgtcaa
aaatatattttgtgatttt Run BLAST on NCBI protein sequence of TCONS_00051368-protein >TCONS_00051368-protein ID=TCONS_00051368-protein|Name=TCONS_00051368-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MSSLGRVVYRRFCSMMNHQVLHKEGLFYIPLEKGQAVLEYTLKDGIIDMY
HTGVPSFYRGQGIAKILVQDAMKYVEAEKLTVKPTCSYVLKYVNENPNPN
IKVCEL Run BLAST on NCBI transcript from alignment at scaffold_201:70902..72650+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051368 ID=TCONS_00051368|Name=TCONS_00051368|organism=Clytia hemisphaerica|type=transcript|length=1749bp|location=Sequence derived from alignment at scaffold_201:70902..72650+ (Clytia hemisphaerica)
CTTCTGTGaattttaataacattttattatttatttacagtgaaaaacat
aaataataattatactcaaatttggaaaataaaattgtGATGGATTGGTA
GAGAATGTCTTCTTTGGGTCGTGTTGTATATCGAAGATTTTGTTCAATGA
TGAATCACCAAGTTTTACATAAAGAAGGATTGTTTTATATCCCACTTGAA
AAGGGTAGGTTTatatcagttttttgaaaaatttcgcgtggatttaattt
cgcgaataaggcTGAAAATAGCTGAAAAACAGCCATTTTTTGCCACAAAT
GGAGACTTTGGACTGGTTTCTCCGCCGAAAAtgcgatttaaaaaattttg
tggtggatttaatttcacgaGTAAGGAATCTCACGCGTAAAAGGCAAATA
TTcacgaaatcgcgaaattttatctcgcgaaagttaatccggtTAAAGAA
GGCTTCCAAAAATATCAGAATCACAAAGAGTTGTTGTGACATATTCTGGT
TAAGCTTAACATTAGGATATATGCTATCCAAttgattctttgaaaagtaa
tGTGATCGAGACGTGATAGAAATCTCTTAGTCCACCGCCACATTTCAGAG
AAAGGTGAATTGTGGTGTAGGTCGAGCCAAAGTTTAGGATcggaattttt
tcaagtttagGGAATGCCAAAGTAGGTTCATTAAAGAAATTAAGACCTTC
CAAACTATTGCCCCATTTCTAAAGCGATTTATTGCGGGATCCTTTTGgta
gataccttatcggggaaaacttcgtcggagaaaattttcgtcgggaaaaa
ttttcgtcggggaaaaatattcgtcacttgctggtagttggtaaacgcat
taaggccggggaaaattttcgtcggtgaaaaatattcatcactaggccaa
aattttgtcatttttcctcgacgaagttttccccgataaggtagtcgAGA
GACTCAGTATTTTCCAAACTAGAAAAGTGCTACCGTGTTAAAAtgttacc
gtgagtatcacaatGTATGTAAAACACAATTcgttaagttacgtaatttt
cGCCATTAtagaagcaaacgttcgatttgcgtaagggatcGCCTCTCTCt
acaaattcgaacgtttgcttccataatggcggaagttgCGCAACTTAAca
agaaatgaaaaacttcaataGGATCATTAAAAAGAGTCAGACCTTCTTAA
GAACTATGTATCTTTTTGCTGTTCTAGGACAAGCTGTTTTAGAATACACT
TTGAAAGATGGAATAATTGATATGTACCACACAGGAGTACCCAGCTTTTA
CCGTGGTCAAGGAATCGCCAAAATATTGGTTCAGGTAAAATTGACCCTCT
TATTAAATGGAATTTTGTCAATGACCTTGAATGTATCTTACTAAATAGCT
TTACACACGCCAATTTTTCAGAACAAAAATATCTCCAacgaaaaaatgtt
aaaatttgtGAATGGTTTAACAGTTCGACTTGTGAAATTTCTGACATCAA
AGATGAATTTACAGAATATATATTTTCCTCCGTGACTTTAGGATGCCATG
AAGTACGTGGAAGCAGAGAAACTGACAGTCAAACCAACATGTAGCTATGT
CTTGAAATATGTCAATGAAAATCCAAACCCCAACATCAAAGTTTGCGAAT
TATAACCAAACAGTCTCCTAAAATTACGTGATTATGTTTACAACAATTTT
ATATAGAAAATTTTAGAACACAtttgtcaaaaatatattttgtgatttt Coding sequence (CDS) from alignment at scaffold_201:70902..72650+ >TCONS_00051368 ID=TCONS_00051368|Name=TCONS_00051368|organism=Clytia hemisphaerica|type=CDS|length=963bp|location=Sequence derived from alignment at scaffold_201:70902..72650+ (Clytia hemisphaerica)
ATGTCTTCTTTGGGTCGTGTTGTATATCGAAGATTTTGTTCAATGATGAA
TCACCAAGTTTTACATAAAGAAGGATTGTTTTATATCCCACTTGAAAAGG
GACAAGCTGTTTTAGAATACACTTTGAAAGATGGAATAATTGATATGTAC
CACACAGGAGTACCCAGCTTTTACCGTGGTCAAGGAATCGCCAAAATATT
GGTTCAGGATGCCATGAAGTACGTGGAAGCAGAGAAACTGACAGTCAAAC
CAACATGTAGCTATGTCTTGAAATATGTCAATGAAAATCCAAACCCCAAC
ATCAAAGTTTGCGAATTATAAATGTCTTCTTTGGGTCGTGTTGTATATCG
AAGATTTTGTTCAATGATGAATCACCAAGTTTTACATAAAGAAGGATTGT
TTTATATCCCACTTGAAAAGGGACAAGCTGTTTTAGAATACACTTTGAAA
GATGGAATAATTGATATGTACCACACAGGAGTACCCAGCTTTTACCGTGG
TCAAGGAATCGCCAAAATATTGGTTCAGGATGCCATGAAGTACGTGGAAG
CAGAGAAACTGACAGTCAAACCAACATGTAGCTATGTCTTGAAATATGTC
AATGAAAATCCAAACCCCAACATCAAAGTTTGCGAATTATAAATGTCTTC
TTTGGGTCGTGTTGTATATCGAAGATTTTGTTCAATGATGAATCACCAAG
TTTTACATAAAGAAGGATTGTTTTATATCCCACTTGAAAAGGGACAAGCT
GTTTTAGAATACACTTTGAAAGATGGAATAATTGATATGTACCACACAGG
AGTACCCAGCTTTTACCGTGGTCAAGGAATCGCCAAAATATTGGTTCAGG
ATGCCATGAAGTACGTGGAAGCAGAGAAACTGACAGTCAAACCAACATGT
AGCTATGTCTTGAAATATGTCAATGAAAATCCAAACCCCAACATCAAAGT
TTGCGAATTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051368-exon-scaffold_201-1491911889:70902..71105 | TCONS_00051368-exon-scaffold_201-1491911889:70902..71105 | Clytia hemisphaerica | exon |
| TCONS_00051368-exon-scaffold_201-1510915933:70902..71105 | TCONS_00051368-exon-scaffold_201-1510915933:70902..71105 | Clytia hemisphaerica | exon |
| TCONS_00051368-exon-scaffold_201-1575043694:70902..71105 | TCONS_00051368-exon-scaffold_201-1575043694:70902..71105 | Clytia hemisphaerica | exon |
| TCONS_00051368-exon-scaffold_201-1491911889:72129..72235 | TCONS_00051368-exon-scaffold_201-1491911889:72129..72235 | Clytia hemisphaerica | exon |
| TCONS_00051368-exon-scaffold_201-1510915933:72129..72235 | TCONS_00051368-exon-scaffold_201-1510915933:72129..72235 | Clytia hemisphaerica | exon |
| TCONS_00051368-exon-scaffold_201-1575043694:72129..72235 | TCONS_00051368-exon-scaffold_201-1575043694:72129..72235 | Clytia hemisphaerica | exon |
| TCONS_00051368-exon-scaffold_201-1491911889:72443..72650 | TCONS_00051368-exon-scaffold_201-1491911889:72443..72650 | Clytia hemisphaerica | exon |
| TCONS_00051368-exon-scaffold_201-1510915933:72443..72650 | TCONS_00051368-exon-scaffold_201-1510915933:72443..72650 | Clytia hemisphaerica | exon |
| TCONS_00051368-exon-scaffold_201-1575043694:72443..72650 | TCONS_00051368-exon-scaffold_201-1575043694:72443..72650 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_201 | supercontig | scaffold_201:70902..72650 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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