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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051369 ID=TCONS_00051369|Name=TCONS_00051369|organism=Clytia hemisphaerica|type=transcript|length=2268bpRun BLAST on NCBI protein sequence of TCONS_00051369-protein >TCONS_00051369-protein ID=TCONS_00051369-protein|Name=TCONS_00051369-protein|organism=Clytia hemisphaerica|type=polypeptide|length=679bp MPPTGIPIKCNKCLKVIKRQSETVLALQNTWHKHCFRCITCKERLRKVYYRun BLAST on NCBI transcript from alignment at scaffold_201:76384..118332+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051369 ID=TCONS_00051369|Name=TCONS_00051369|organism=Clytia hemisphaerica|type=transcript|length=41949bp|location=Sequence derived from alignment at scaffold_201:76384..118332+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_201:76384..118332+ >TCONS_00051369 ID=TCONS_00051369|Name=TCONS_00051369|organism=Clytia hemisphaerica|type=CDS|length=38760bp|location=Sequence derived from alignment at scaffold_201:76384..118332+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00051369 vs. Swiss-Prot (Human)
Match: LIMK1 (LIM domain kinase 1 OS=Homo sapiens GN=LIMK1 PE=1 SV=3) HSP 1 Score: 234.958 bits (598), Expect = 1.210e-66 Identity = 133/292 (45.55%), Postives = 183/292 (62.67%), Query Frame = 1
Query: 1378 LHRAQSLKVVETSSNQIFRPSDLVXXXXXXXXXXXXVSKITHKVTGKEMAMKKIFDIDEEAIAQFMKEVHLLKSLRHPNVLQFIGVMFEDKTLHLLLEYMKTGTLWELIEHKFVEFSEKLMTSLAKDIASGMSYLHSQNVMHRDLKSTNVLLKKHQGQYTAIVADFGLATVMRAEEVPFSSTIPKSSFCSPTSPRSAMK--FQKRTTFVGTAYWMAPEILNGVKYDESVDVFSYAITLCELISRTRNDGDSIPRKRDYSLDVGAF-KKMLTLNCPPLLFDLCALCGDFDPVK 2244
L R++SL+VV ++IFRPSDL+ GE +G+G FG+ K+TH+ TG+ M MK++ DEE F+KEV +++ L HPNVL+FIGV+++DK L+ + EY+K GTL +I+ ++ S AKDIASGM+YLHS N++HRDL S N L+++++ +VADFGLA +M E+ P RS K +KR T VG YWMAPE++NG YDE VDVFS+ I LCE+I R D D +PR D+ L+V F + NCPP F + C D DP K
Sbjct: 318 LGRSESLRVV-CRPHRIFRPSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVRENK---NVVVADFGLARLMVDEKT------------QPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDRYCPPNCPPSFFPITVRCCDLDPEK 593 HSP 2 Score: 119.013 bits (297), Expect = 1.156e-27 Identity = 87/292 (29.79%), Postives = 130/292 (44.52%), Query Frame = 1
Query: 226 IPIKCNKCLKVIKRQSETVLALQNTWHKHCFRCITCKERLRKVYYSWKGELYCKKHYLEKYAHFCHICHKPIS-GLLMVSGEISFHHECFKCCKCRILIGHQENYVFEERSRLYCKKCYEIDI------GIYLKFSKFKLFHKTAIHQIHVAPRFFKKNSFTFKVNKESKDGLFTGLQKKMTTSKNVKPSKVTIESSEVQ-SLKVGDTLLEINGTPITSDNIKQFSELLEIAEASKRISVTLERAPELSRPQDQNVISTNGLETLDEQSPTSSYS-SPTFQQQKSCEEENVF 1074
+P+ C C + I + + AL WH CFRC C L YY G+L+CKK Y +Y CH C + I+ GL+MV+GE+ +H ECF C C IG + Y E S+LYC CY + I L H + + + K + ++ G + + + V+ S +V+ S+ VGD +LEINGTPI + + + L I E S+ + +TLE P T G E SP SS + +P+ + S ++ V
Sbjct: 22 LPV-CASCGQRIY-DGQYLQALNADWHADCFRCCDCSASLSHQYYEKDGQLFCKKDYWARYGESCHGCSEQITKGLVMVAGELKYHPECFICLTCGTFIGDGDTYTLVEHSKLYCGHCYYQTVVTPVIEQILPDSPGSHLPHTVTL--VSIPASSHGKRGLSVSIDPPHGP---PGCGTEHSHTVRVQGVDPGCMSPDVKNSIHVGDRILEINGTPIRNVPLDEID--LLIQETSRLLQLTLEHDPH----------DTLGHGLGPETSPLSSPAYTPSGEAGSSARQKPVL 294 The following BLAST results are available for this feature:
BLAST of TCONS_00051369 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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