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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051370 ID=TCONS_00051370|Name=TCONS_00051370|organism=Clytia hemisphaerica|type=transcript|length=2328bpRun BLAST on NCBI transcript from alignment at scaffold_201:76397..118063+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051370 ID=TCONS_00051370|Name=TCONS_00051370|organism=Clytia hemisphaerica|type=transcript|length=41667bp|location=Sequence derived from alignment at scaffold_201:76397..118063+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00051370 vs. Swiss-Prot (Human)
Match: LIMK2 (LIM domain kinase 2 OS=Homo sapiens GN=LIMK2 PE=1 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 3.312e-55 Identity = 77/185 (41.62%), Postives = 110/185 (59.46%), Query Frame = 2
Query: 1703 FSEKLMTSLAKDIASGMSYLHSQNVMHRDLKSTNVLLKKHQGQYTAIVADFGLATVMRAEEVPFSSTIPKSSFCSPTSPRSAMK--FQKRTTFVGTAYWMAPEILNGVKYDESVDVFSYAITLCELISRTRNDGDSIPRKRDYSLDVGAF-KKMLTLNCPPLLFDLCALCGDFDPVKRFDYNLLK 2248
F + AK IASGM+YLHS ++HRDL S N L+K + T +VADFGL+ ++ E + + K++ T R+ K +KR T VG YWMAPE+LNG YDE+VD+FS+ I LCE+I + D D +PR D+ L+V F +K + +CPP F L A+C +P R ++ L+
Sbjct: 423 FPWQQKVRFAKGIASGMAYLHSMCIIHRDLNSHNCLIKLDK---TVVVADFGLSRLIVEERK--RAPMEKAT----TKKRTLRKNDRKKRYTVVGNPYWMAPEMLNGKSYDETVDIFSFGIVLCEIIGQVYADPDCLPRTLDFGLNVKLFWEKFVPTDCPPAFFPLAAICCRLEPESRPAFSKLE 598 HSP 2 Score: 98.5969 bits (244), Expect = 3.312e-55 Identity = 55/105 (52.38%), Postives = 78/105 (74.29%), Query Frame = 3
Query: 1365 LHRAQSLKVVETSSNQIFRPSDLVXXXXXXXXXXXXVSKITHKVTGKEMAMKKIFDIDEEAIAQFMKEVHLLKSLRHPNVLQFIGVMFEDKTLHLLLEYMKTGTL 1679
+ R++SL+ + S QIFRP DL+ GE +G+GFFG+ K+THK TGK M MK++ DEE F+ EV +++SL HPNVL+FIGV+++DK L+LL EY++ GTL
Sbjct: 309 ISRSESLRCSSSYSQQIFRPCDLIHGEVLGKGFFGQAIKVTHKATGKVMVMKELIRCDEETQKTFLTEVKVMRSLDHPNVLKFIGVLYKDKKLNLLTEYIEGGTL 413 HSP 3 Score: 119.013 bits (297), Expect = 1.047e-27 Identity = 75/268 (27.99%), Postives = 123/268 (45.90%), Query Frame = 3
Query: 222 KCNKCLKVIKRQSETVLALQNTWHKHCFRCITCKERLRKVYYSWKGELYCKKHYLEKYAHFCHICHKPISGLLMVSGEISFHHECFKCCKCRILIGHQENYVFEERSRLYCKKCYEIDIGIYLKFSKFKLFHKTAIHQIHVAPRFFKKNSFTFKVNKESKDGLFTGLQKK----MTTSKNVKPSKVTIESSEVQSLKVGDTLLEINGTPITS-------DNIKQFSELLEIAEASKRISVTLERAPELSR--PQDQNVISTNGLETLD 986
+C C I + TWH CFRC C++ L YY G+LYC K Y K+ FCH C ++G MV+GE +H ECF C C+++I + Y + + LYC KC+ ++ + F +L ++ Q+ + + E + G ++ TT + + +++ I + ++ GD +LEINGTP+ + D I Q S+ L++ +S L++ +R P QN + L TLD
Sbjct: 11 RCPGCGDHIAPSQIWYRTVNETWHGSCFRCSECQDSLTNWYYEKDGKLYCPKDYWGKFGEFCHGCSLLMTGPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHN-EVVLAPMFE--RLSTESVQEQLP-----YSVTLISMPATTEGRRGFSVSVESACSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAISQTSQTLQLLIEHDPVSQRLDQLRLEARLAPHMQNAGHPHALSTLD 270 The following BLAST results are available for this feature:
BLAST of TCONS_00051370 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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