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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051372 ID=TCONS_00051372|Name=TCONS_00051372|organism=Clytia hemisphaerica|type=transcript|length=1644bp
AAGGAGAGGCGAGAAGGGAAAAACACCTTTTTTCTTCAACAAGTCAAGAC
CGAGATTTATTGCGTTAGGATACGAGAAGGAAACATCAAAAACCATTCTC
TCACTATCCTTAACATATGCTGATTGTTTTCATCGATTTCATCCATCAGG
CTAGTCACGAAGAAATCATTCATCGTCAGTCTACAAAAAGAAAGGGGCGT
GCGTTTTCAAAGTTCTGCCCAATTTCATTACACTTGCTTGGTTTATAAGA
ATCAATCATGCTCTACTATAACAATACaacttttataagcaaccaaaCCA
CCGAAAATCCACTCGTTAATACACTTCCAACGACGCGATCATTCCCAGCC
TTCTTGGTTGTTTATTTATGCTTTGGTTGTGTTTCACTTTTCGGACACGC
ACTTGTATCTCGGACAGTTTTTCATCATGTCACCTTGAATTATGCACCGT
ATCATTTATTGATGAATCTAGGTTTATGTGACGTTGGTTATTCAGCTATT
GGAATGCTCATCCTCATCATATCCACACTGACCGATTCAACCATGGATGC
ACCTAAAGCATTTTGCCGGATATGTTTCATCGCTTCTATCTTTACGTCAT
CATGTCTAGCCTACGATCGTGTACTCAGTGTTCGGAATCTGTTCCGATAC
CAACACATCGCACAAAAGAAAGTACCCATCCTAATGATCACATTCTCATG
GTTCGCTGCTTTGTTTTGCCAAATGGTCATTATGATTTTCGAATATGCGC
CATCTACAATTTTCTCTTACAGAGGATCTCGGATACCCATGCGTTTCAGC
GCCGCCTTCATTAATTCCCTAATTATCACATCAAATagtatttttattgt
ttattgtcTTTTATACGCACGTCAAGTCGCCAAACAAGAGTTAGCACGTC
TTGGAGGGTTATCGCGTTATTTGCACGGTGAGACAGCAGAGTTGTATTTC
TCATTGACGCGAcgtcaaaaattaaataacGATATCACGATTGTATCTAT
CTTTTCACTGGCAACTTTGATTCCACCTAACattacttttttgaagattt
tcatccGGCCTGGCGACAATGATGCATCTTTATTGCTATTTAATTGGCTA
ATTGGAGCAGTCTATTGCGCAATAAATCCATTTGTGTACTTAAGATGGAT
GCGAAAGTTGAAACTATGTTTTGTCAGAGATTTGGCAAGGATACGCCGTT
TTATCAACGTCAAAAGAAATGGGAGAGTTAGACCAACTTGAGTATGctta
actttaaaatctaaatatttAGAGCTCAAAATTAAAACGTTATTTATAGT
TAAACATATTTAAACTAACTTTATCCCGTAACAGTTACCGCGTcattagt
ctagcaagctagacgactaattcagaaatagtaaaaataaagcaaaaagt
aatggagggaacaattattatcttatacaaactaaattcaataacaataa
tcgtattatcatataacgcctatactactgtattacacgcattataagcG
ACTCCAgtccacagatatctaagcccgaagggctagataagcaactttaa
gctttctccagcaaaaaaaagtgaagctaaaatttgactttttaaatttc
gtgccgatggataggatctagcattttaattgttttcggagcgc Run BLAST on NCBI protein sequence of TCONS_00051372-protein >TCONS_00051372-protein ID=TCONS_00051372-protein|Name=TCONS_00051372-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
MLYYNNTTFISNQTTENPLVNTLPTTRSFPAFLVVYLCFGCVSLFGHALV
SRTVFHHVTLNYAPYHLLMNLGLCDVGYSAIGMLILIISTLTDSTMDAPK
AFCRICFIASIFTSSCLAYDRVLSVRNLFRYQHIAQKKVPILMITFSWFA
ALFCQMVIMIFEYAPSTIFSYRGSRIPMRFSAAFINSLIITSNSIFIVYC
LLYARQVAKQELARLGGLSRYLHGETAELYFSLTRRQKLNNDITIVSIFS
LATLIPPNITFLKIFIRPGDNDASLLLFNWLIGAVYCAINPFVYLRWMRK
LKLCFVRDLARIRRFINVKRNGRVRPT Run BLAST on NCBI transcript from alignment at scaffold_201:122541..127989+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051372 ID=TCONS_00051372|Name=TCONS_00051372|organism=Clytia hemisphaerica|type=transcript|length=5449bp|location=Sequence derived from alignment at scaffold_201:122541..127989+ (Clytia hemisphaerica)
AAGGAGAGGCGAGAAGGGAAAAACACCTTTTTTCTTCAACAAGTCAAGAC
CGAGTATgtacttttctctttttctgaTACTAATGAAGTTGTTTTTAGTT
TCAAAACATGTCATGTCCTGACATGAGGatttaatgttaatttttcgGCC
GCAGCAATATTAGACAATATTAgactttttaaaggttttctaaGGCATTA
Aagggacatgttttttaattcttaccaaaatgacattttaaaaaattcta
aattttgaaaaaagcaatttaggggtTTTTAATATTAAAAAAGTGATTTG
TTGACCTGATATGAGCTATTTTTTAGCATTTGACACTATATTCTAAATTG
CTAATTTTGTGCATATGAGCATGAATTTTCTTAATCTGACtgaaaaaatt
gttatttgGATAGTTATTTTGAATGCAAATTGTTAAAGGGCCCAGATTTT
CCCGTTCTATGGCCCTGTTTTGAGCCAGTAATTAGCAACCCTATTTGAAA
GAAAAGCTAATAATTTGCTCTAATTAAAGGACCTTGGAACTTCAAAAGTG
GTATATTTGAGTTTTCTACACACATGCTAATAGACAATGAAGATAAAACC
AAGAATAAAAACGCCATATGgttaaaaaagagcaaaaaattaGCTTTATG
GAAGAAATGCTAAACAATTGCTCATTTTGGGTCCATAATACAGTAGtttt
attctaaatttattAGAAGTTAGTTCCTGTAAACATTATAGAATAGACTT
TCACTTAAAGAAAATGTAAGAAATTataaatgtttccaaatttaATGACT
AAAATAAGATATCATAGTTTCCAGAATTCGAAAATAGACCAAAGCTAAAT
TAGGCCTTTTAATGACTCTATAATCATAAATTTGGCTTTTTATCAATAAT
TAAGGGCTTAATAAACATAATTGATCAAAATTAAAGCCATACTGCAGTTA
TTTTTAGCACAGTGAGAGGTTTTTAAAAAGCAACAACCAGTGCTAATTAT
CTGCTCACAATTAGGCCCTACAACCATTTTAGATGCTAATTCATACGGGA
AATTATTTATAAAAGGTGTATGGGTGTccctgcaaaatttcagctacATA
GCAGTAGAAGTGATAGAGTTATGTAGAGTTAAAGTTCAATGCTAATTTTT
TGCTCGTGCTAAAATGCTAagttattggtatatattttcgcgtgttacaa
attttcgcgggtacttaatttcgcaagttttttggtcaattttcgcggaa
tttaatactatttaaatttttcaaaattacaaaatcgcgaaattaaatac
gcgcgaaaaattttttcttagtattttgttagtatttttacatcaaaaac
gttgtgtttcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTTGCAAATAAGTTaaagatcgaaagttgtttcgagatgtgacct
cacattctattgattttgtaaacaaaaaaatagcaaagttgatttcgagc
aaatttacaatcgaatgttttgattataagataTAAAACGTAttgaggaa
tgttttttttttattcaatgtattttcattatttcaaaacctttttctaa
tcgtgtcgcacttgtttttactacatcagcatcatcaaacctttaaatca
aaacaaaacgaaaTTTTAGTATTCCAGAAGTGGAATActatcaaatcaaa
agaaaattcaaaaaaaatctgaaaatgaaaaataagaaaatcaacttctt
ttaGAGTCGTGCTatgatcttgatttttttattcaattcttCGATCTTTT
AGAACTTCATGATACCCCCCAACTTTTTTCCCCTGATAAGGTATTTCTTT
ATTATTGCTTTGAATTATACGAacttaaaaatagtttttaaaaaGATCTG
TTATCGTCGTTTCAGGATTTATTGCGTTAGGATACGAGAAGGAAACATCA
AAAACCATTCTCTCACTATCCTTAACATATGCTGATTGTTTTCATCGATT
TCATCCATCAGGCTAGTCACGAAGAAATCATTCATCGTCAGTCTACAAAA
AGAAAGGGGCGTGCGTTTTCAAAGTTCTGCCCAATTTCATTACACTTGCT
TGGTTTATAAGAATCAATCATGCTCTACTATAACAATACaacttttataa
gcaaccaaaCCACCGAAAATCCACTCGTTAATACACTTCCAACGACGCGA
TCATTCCCAGCCTTCTTGGTTGTTTATTTATGCTTTGGTTGTGTTTCACT
TTTCGGACACGCACTTGTATCTCGGACAGTTTTTCATCATGTCACCTTGA
ATTATGCACCGTATCATTTATTGATGAATCTAGGTTTGTACGCTAAAATG
AAGTATACTTTTTTACTCACTCTTGACCCTTTCGTACACTCTCTGGTGGT
GTAATGTCAATTGGGGTTACTTACATAAAAGAGGGGTAACTTTCTTAGCC
ATTGCAAACAGCAGACTTTTCTGGTCAGGGATTTATAACTCATGTTGCGT
CCAAGACGTTGAACGTCGGTAGAATAGAATATAAACAAGTGAAATTGTGG
TTTTCTGACTAATACTTAAATCAAGAACCAGATTAAGTTGTACTTTGGAT
GCTTTGAAAGTTATCCCACATTTATaaaaagtgagtttatgtatttgctt
TTTTGATGACGGCGGATTGACTGAAGCGATCGATTTGGAATATTAACCCC
CACTTTTGACCCGTGAAATCAAGGAcgagtgctgatttaccgtcgttcta
agtcaatcaggatctagacaaatcagaagctaaccgtctccATCGTAGAA
AAAACATAAACTCGCTTAACCCCGAATGACGCACCTAAAAAGGGTCCTCC
tattaataatttttcaaatgtcttAAAATCCTAGATTCAGACATTCTTCT
CTAGCTTTCGGTTTTATCTCAATAGCTATATtcataaaaatcactttttc
tCGCTTTCTTTTTGTACGACCCATAGGTTTATGTGACGTTGGTTATTCAG
CTATTGGAATGCTCATCCTCATCATATCCACACTGACCGATTCAACCATG
GATGCACCTAAAGCATTTTGCCGGATATGTTTCATCGCTTCTATCTTTAC
GTCATCATGTCTAGCCTACGATCGTGTACTCAGTGTTCGGAATCTGTTCC
GATACCAACACATCGCACAAAAGAAAGTACCCATCCTAATGATCACATTC
TCATGGTTCGCTGCTTTGTTTTGCCAAATGGTCATTATGATTTTCGAATA
TGCGCCATCTACAATTTTCTCTTACAGAGGATCTCGGATACCCATGCGTT
TCAGCGCCGCCTTCATTAATTCCCTAATTATCACATCAAATagtattttt
attgtttattgtcTTTTATACGCACGTCAAGTCGCCAAACAAGAGTTAGC
ACGTCTTGGAGGGTTATCGCGTTATTTGCACGGTGAGACAGCAGAGTTGT
ATTTCTCATTGACGCGAcgtcaaaaattaaataacGATATCACGATTGTA
TCTATCTTTTCACTGGCAACTTTGATTCCACCTAACattacttttttgaa
gattttcatccGGCCTGGCGACAATGATGCATCTTTATTGCTATTTAATT
GGCTAATTGGAGCAGTCTATTGCGCAATAAATCCATTTGTGTACTTAAGA
TGGATGCGAAAGTTGAAACTATGTTTTGTCAGAGATTTGGCAAGGATACG
CCGTTTTATCAACGTCAAAAGAAATGGGAGAGTTAGACCAACTTGAGTAT
GcttaactttaaaatctaaatatttAGAGCTCAAAATTAAAACGTTATTT
ATAGTTAAACATATTTAAACTAACTTTATCCCGTAACAGTTACCGCGTca
ttagtctagcaagctagacgactaattcagaaatagtaaaaataaagcaa
aaagtaatggagggaacaattattatcttatacaaactaaattcaataac
aataatcgtattatcatataacgcctatactactgtattacacgcattat
aagcGACTCCAgtccacagatatctaagcccgaagggctagataagcaac
tttaagctttctccagcaaaaaaaagtgaagctaaaatttgactttttaa
atttcgtgccgatggataggatctagcattttaattgttttcggagcgc Coding sequence (CDS) from alignment at scaffold_201:122541..127989+ >TCONS_00051372 ID=TCONS_00051372|Name=TCONS_00051372|organism=Clytia hemisphaerica|type=CDS|length=1968bp|location=Sequence derived from alignment at scaffold_201:122541..127989+ (Clytia hemisphaerica)
ATGCTCTACTATAACAATACaacttttataagcaaccaaaCCACCGAAAA
TCCACTCGTTAATACACTTCCAACGACGCGATCATTCCCAGCCTTCTTGG
TTGTTTATTTATGCTTTGGTTGTGTTTCACTTTTCGGACACGCACTTGTA
TCTCGGACAGTTTTTCATCATGTCACCTTGAATTATGCACCGTATCATTT
ATTGATGAATCTAGGTTTATGTGACGTTGGTTATTCAGCTATTGGAATGC
TCATCCTCATCATATCCACACTGACCGATTCAACCATGGATGCACCTAAA
GCATTTTGCCGGATATGTTTCATCGCTTCTATCTTTACGTCATCATGTCT
AGCCTACGATCGTGTACTCAGTGTTCGGAATCTGTTCCGATACCAACACA
TCGCACAAAAGAAAGTACCCATCCTAATGATCACATTCTCATGGTTCGCT
GCTTTGTTTTGCCAAATGGTCATTATGATTTTCGAATATGCGCCATCTAC
AATTTTCTCTTACAGAGGATCTCGGATACCCATGCGTTTCAGCGCCGCCT
TCATTAATTCCCTAATTATCACATCAAATagtatttttattgtttattgt
cTTTTATACGCACGTCAAGTCGCCAAACAAGAGTTAGCACGTCTTGGAGG
GTTATCGCGTTATTTGCACGGTGAGACAGCAGAGTTGTATTTCTCATTGA
CGCGAcgtcaaaaattaaataacGATATCACGATTGTATCTATCTTTTCA
CTGGCAACTTTGATTCCACCTAACattacttttttgaagattttcatccG
GCCTGGCGACAATGATGCATCTTTATTGCTATTTAATTGGCTAATTGGAG
CAGTCTATTGCGCAATAAATCCATTTGTGTACTTAAGATGGATGCGAAAG
TTGAAACTATGTTTTGTCAGAGATTTGGCAAGGATACGCCGTTTTATCAA
CGTCAAAAGAAATGGGAGAGTTAGACCAACTTGAATGCTCTACTATAACA
ATACaacttttataagcaaccaaaCCACCGAAAATCCACTCGTTAATACA
CTTCCAACGACGCGATCATTCCCAGCCTTCTTGGTTGTTTATTTATGCTT
TGGTTGTGTTTCACTTTTCGGACACGCACTTGTATCTCGGACAGTTTTTC
ATCATGTCACCTTGAATTATGCACCGTATCATTTATTGATGAATCTAGGT
TTATGTGACGTTGGTTATTCAGCTATTGGAATGCTCATCCTCATCATATC
CACACTGACCGATTCAACCATGGATGCACCTAAAGCATTTTGCCGGATAT
GTTTCATCGCTTCTATCTTTACGTCATCATGTCTAGCCTACGATCGTGTA
CTCAGTGTTCGGAATCTGTTCCGATACCAACACATCGCACAAAAGAAAGT
ACCCATCCTAATGATCACATTCTCATGGTTCGCTGCTTTGTTTTGCCAAA
TGGTCATTATGATTTTCGAATATGCGCCATCTACAATTTTCTCTTACAGA
GGATCTCGGATACCCATGCGTTTCAGCGCCGCCTTCATTAATTCCCTAAT
TATCACATCAAATagtatttttattgtttattgtcTTTTATACGCACGTC
AAGTCGCCAAACAAGAGTTAGCACGTCTTGGAGGGTTATCGCGTTATTTG
CACGGTGAGACAGCAGAGTTGTATTTCTCATTGACGCGAcgtcaaaaatt
aaataacGATATCACGATTGTATCTATCTTTTCACTGGCAACTTTGATTC
CACCTAACattacttttttgaagattttcatccGGCCTGGCGACAATGAT
GCATCTTTATTGCTATTTAATTGGCTAATTGGAGCAGTCTATTGCGCAAT
AAATCCATTTGTGTACTTAAGATGGATGCGAAAGTTGAAACTATGTTTTG
TCAGAGATTTGGCAAGGATACGCCGTTTTATCAACGTCAAAAGAAATGGG
AGAGTTAGACCAACTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051372-exon-scaffold_201-1491911889:122541..122593 | TCONS_00051372-exon-scaffold_201-1491911889:122541..122593 | Clytia hemisphaerica | exon |
| TCONS_00051372-exon-scaffold_201-1510915933:122541..122593 | TCONS_00051372-exon-scaffold_201-1510915933:122541..122593 | Clytia hemisphaerica | exon |
| TCONS_00051372-exon-scaffold_201-1575043694:122541..122593 | TCONS_00051372-exon-scaffold_201-1575043694:122541..122593 | Clytia hemisphaerica | exon |
| TCONS_00051372-exon-scaffold_201-1491911889:125756..126173 | TCONS_00051372-exon-scaffold_201-1491911889:125756..126173 | Clytia hemisphaerica | exon |
| TCONS_00051372-exon-scaffold_201-1510915933:125756..126173 | TCONS_00051372-exon-scaffold_201-1510915933:125756..126173 | Clytia hemisphaerica | exon |
| TCONS_00051372-exon-scaffold_201-1575043694:125756..126173 | TCONS_00051372-exon-scaffold_201-1575043694:125756..126173 | Clytia hemisphaerica | exon |
| TCONS_00051372-exon-scaffold_201-1491911889:126817..127989 | TCONS_00051372-exon-scaffold_201-1491911889:126817..127989 | Clytia hemisphaerica | exon |
| TCONS_00051372-exon-scaffold_201-1510915933:126817..127989 | TCONS_00051372-exon-scaffold_201-1510915933:126817..127989 | Clytia hemisphaerica | exon |
| TCONS_00051372-exon-scaffold_201-1575043694:126817..127989 | TCONS_00051372-exon-scaffold_201-1575043694:126817..127989 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_201 | supercontig | scaffold_201:122541..127989 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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