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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051390 ID=TCONS_00051390|Name=TCONS_00051390|organism=Clytia hemisphaerica|type=transcript|length=824bp
tgttaattgacagtttagaatttttttgatatGAATTGGAACTTAGAAAA
TCATGGTTagttgaaaacttttttgagtGGAACTTTGGTCCTGATTTTAT
TTCATTGCGCGGCAAACGTTCTAATGCGGGAATCGAGAGACGGGACACAA
TAAGGAACGTGCTTTGGAAAGTTTTGAAGCGAAGGTCCAAGCCAAGTACA
ACGAAAGATATGGCTcaaCAACTTCCATTGAATCCAAAACCCTTTTTGAA
TGGACTGACCGGCAAGGCAGTGATGGTGAAACTGAAATGGGGAATGGAGT
ACAAAGGTTATCTTGTTTCAGTTGACAACTACATGAACATGCAGatcGCC
AATTCAGAAGAATTTATTGATGGACAGATGACAGGAAACTTAGGAGAAAT
TTTGATAAGGTATCTGTATCTATTCTTTACCTAGATGATCTCCCTTATGC
AAAGTGAActtatttatgacttctttcaaattttttagtaTATGAGCCCC
CTCGagtatgaaaattttcaaaagatttggtGCTTAGTGTTTTCTGCCTG
AGCCTACACATACTGTTAATTGTTGATAAGCGTTGCTGAAAAAACATTCC
TTTGTTttgtagtagggggaaatttgtaaaatcgctcgatttttttagtc
aaagcacttgttatacatttttggaaagctaaggggtaggggaatcaaaa
taacttgggtgccaattttttatcggacactttggtgtgattttcggaca
aatacaacggtctcaggcaaaaatcatagggtgaaaaatttatgaaaatt
ttagcttgagaaaacggagacctg Run BLAST on NCBI transcript from alignment at scaffold_201:562619..567905+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051390 ID=TCONS_00051390|Name=TCONS_00051390|organism=Clytia hemisphaerica|type=transcript|length=5287bp|location=Sequence derived from alignment at scaffold_201:562619..567905+ (Clytia hemisphaerica)
tgttaattgacagtttagaatttttttgatatGAATTGGAACTTAGAAAA
TCATGGTTagttgaaaacttttttgagtGGAACTTTGGTCCTGATTTTAT
TTCATTGCGCGGCAAACGTTCTAATGCGGGAATCGAGAGACGGGACACAA
TAAGGAACGTGCTTTGGAAAGTTTTGAAGCGAAGGTCCAAGCCAAGTACA
ACGAAAGATATGGCTGTAAGTATTTGTTTTATCTCGCTTTCCAACAATGA
GACAATTCCTAAAATGTGAGTATGAATGATGAGAAAATGCTACATTTTAA
CCATCTTGATTTACCTGTGCTGTGGAGATGGGGGATTCCTACCTATAGTC
CTATCATCATCACAGTCagtcagtctaaacttaaactcctatatcagaat
tagaaactaggctaggcttacctcttttatcttttcctttaaaacaataa
aatgctgacaagttgacacaacacctGTCTACATGTACATTGCCAAGTAA
TCCcttgagagaagtttatatcgaaatctgcaacaaaaacgaaagtggtc
tcttctactgattgcttcccttCCAGCTCTCTTTCGCAGCTGgaattatc
aaatttccaccaatgaggttgccgcatttcaaacggcccttctttttgac
ACCTGTGGCCTCctgcctctcagtgccttgcacgacgggcggctgtaaaa
tcccccacccttcatatatttgtttcaatctgtgatccgTGGCTTACTTA
ggttaggttttttctcatcttcaatttactgaagaaagcgggaatttgac
gcgagagttagattgtcaacaaagtccCGTAAAatatcattgaataaaag
aagaacttaaaatcttaaatatttcattttgaagaataggcgcaaaaaag
tgaaacaaagaaaagtttcatttttcattgctttaatcaaaatgggggat
ttggaaaattttctatgtttagttttttgcacaaacccctgtaactatgg
gtgagcaccccgttgctaagatgttcgcttgaaatcgaaaatgaaaccac
tcacaacgaaagtaaaatcaagTCTATACTGTGTCAGGAGTTTTGGCCTA
ATTAGGAAagcattttacaattttcccaaatttcctaattaggaatgGCC
TTCCTAATTAAGAAAGGAAAGACCCAATAAAACCCTCTCTACATGATGca
gaaacaaaatttcaaaatgtatccGGGGCTTCAACGCTTTGAAATTTCCT
AACTAGGAAAGTTATTCGTTCCGGGCGTTATATCTCAACGCTCCGCCCAT
GAGAGATCATAATTTTTGCACATAGATCAATTTTGACTTATACTAATGGT
CATGGTTAGAACTTGCGATTTTGGAGTGATTAGGAGAAAAGGTAActttt
ttgagcactttcctagttaggaaagttttcttttctaaTTAGGAAAGTCG
GGAAAATCCTGGAAAATCGTAAAATACTTTCCTAATTAGGCAAAAACTCC
TGACTGACAGTCAGTACCCTCCCGGTCAGCGCTCCGGAAActtggatagc
cctgaattagtagtatccaaaaatggtatggtttgtcagttttcgatgtc
tagatctcaagatattttggtttaaatattcaagattatcaatatttttt
gctgagtcagcagtttttcagcatatttacccaccttaaaaatgaaatat
ctcaagatcagaacatcgaaagttaacaaaccataccatactactaattc
agggctatccagctgtgggaatgattttttctgaaaatgctcccagaaaa
atgctgacgtcatcagaaaacgccaaaaacttcgattttttgccttaaaa
atgccatttctcagcaccaggtggtcgaaacttaacaaataaccccattt
tcttcaTCTACTTTTCATGCTGAATCTGTTGGtagcctcagatatttgat
gTTCAGACTTTGAAAAAACTGTTAGTAAAGGGGgccccttgataagttct
attgATTAACTAAAattcgattcactcgaaaactgcaggagattcgaagg
gaaaattttttttgtcaattctacagcctattaggagcataatatcaaaa
atttgccctgatctaaggggtgccctacgaaaaccatttttaaggtcTTT
TCTGAATCTCAGACGCTGGtctacttcgctactttattcattcgtttatc
tattgctttgtctacttgccacttcgctactttattcatttgtttatcta
ttactttatcaactcgctactttattcactcttttatctattgctttatc
tacacGCTACTTCAcaactttattcattcgtttatctattgctttatcaa
ttcgccacttcgctactttattcattcgtttatctattattttatgaact
cgctactttattcactcgattatctattgctttatcaactcgctactttA
ATCACTCGTTCatttattgctttatctacttgccacttcgctactttatt
cattcgtttatctattactttatcaactcgccactttattcactcgttta
tccaTTGCTTTTATCTACTCGttacttcaaaacttcactatACCTTGCTT
TGTCTATAATCTCTTACTTTAACTCTTACTTCGCTTTTCTCGAGAAATGA
ATTGAAGATACTTTcgcattttcttccaaacaacatcgcaaaatactaaa
aatgtttcacaaacagtgaaaaaatttcacctgCAGCGCTCCTCTGTTAC
CTCGCTTCGCTCGGAAAAATAGCGAAGCTCCTAAATTTATAATTCGAGCC
CTGCCGGAGTTTTCCGGAGCAgctaaaaaaactatttttctctCCAGAAA
GTTCCAGAGCTTTTCCGGTGCTTCCGGagcaattgatttttaatgcGTTC
TAAAAAACACGCACGAGtgtctggaacaaagaagaacaaattagtgacgt
ttgacgtcactcgcgcggctagttacacactcgttatttgttaatcccat
cgggcatAGGCTCTAGTTCTCCAATCGgcatccggtcattttgaatgaaa
acaaaaaagtttaaaagggcGCGCAgttcagtgaaagttatcgtgacatg
tcaTGACAGAAAATGACATAAAAGTGCTTACTGTACTTATAGAACCCAGA
ATTTTTTGCCGACGCAGgttaatttaatattttatttaattgttttttta
ttttatttttacggctctttttttttttgcggcTCATTATTTTTACGGCT
TTTATTTTAAAATGACACacaaacacaagttatttgtgatggCCACACTA
TTGAGTCAATGTCAACAAGGGGCGAAATTTAGGTCCAGTATCGGTGATAT
CAAAAGTTCATGACTGACATTCCTGTATGAAGTTTTAAATTTGAAcatta
taaaatttattttttagcaaCAACTTCCATTGAATCCAAAACCCTTTTTG
AATGGACTGACCGGCAAGGCAGTGATGGTGAAACTGAAATGGGGAATGGA
GTACAAAGGTTATCTTGTTTCAGTTGACAACTACATGAACATGCAGGTAT
GGACTTCCTTCTGCTTCTCTATAacatttttgtttgaaagattCAGCTGc
agtgaaaatttcaatcaCTTTTTTGCGGTTGTTAAACAACCACAATACTC
AATTTGAATTCAGTTTTAAAACTCAATATTTGAACAATTTTACTATTGTG
TTAGCAACATGCCAAAGATTATGTAAGAAGtgggacaaaataaaaaaatt
ttcccgtTTTTTGATAAGCAATccttgaaaaataaacttttcacaGGGCA
TCAAAGGGGTCTTGTGACAAATTTCAAGGCCTTCATTGGTATTGATTGCT
CCAAGAGGTTACCTAATTGTTGGAAACTCAATTTCTAATGTGAAAAACGG
CCAGTGCCaaaagtgcttgaaattttTCCCGAGCTAGCATCTCTTGCCAT
GTACACGTTTTCAATAAGCATACAGTAGGGTAAACTTTGTAAGCCTTGTT
ATGCTTGGCAAAATGAATTTATTGAGTCTCGAATATATGTTTATACCATA
CTTATGGGTGAATTTACACATTATGCAGGTTTTTTTTGCAGTTTCGGAGA
TTAaatgctttgaaattttgtaaactaGGGCTTATCACATGCTTAGGCAC
TTGCTTAAGATCTTCTTATAGATTTGAGCCTGGActtgcttataagcgtt
atgcttataaaaaacgtgttctTTAGcactttatttctttttttcagatc
GCCAATTCAGAAGAATTTATTGATGGACAGATGACAGGAAACTTAGGAGA
AATTTTGATAAGGTATCTGTATCTATTCTTTACCTAGATGATCTCCCTTA
TGCAAAGTGAActtaattaaagtctgtctcgaaataatttgcagctggag
aaaaaaatggctgtaacttttgatagaattccaatcaagttgcgattttg
tgctcgttaaaaagatattNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNatatctttttaacaagcactta
atcgcaacttgattcgaattctatcaaaagttacagccatttttgtctcc
agctgcaaattatttcgagacagactttatgacttctttcaaatttttta
gtaTATGAGCCCCCTCGagtatgaaaattttcaaaagatttggtGCTTAG
TGTTTTCTGCCTGAGCCTACACATACTGTTAATTGTTGATAAGCGTTGCT
GAAAAAACATTCCTTTGTTttgtagtagggggaaatttgtaaaatcgctc
gatttttttagtcaaagcacttgttatacatttttggaaagctaaggggt
aggggaatcaaaataacttgggtgccaattttttatcggacactttggtg
tgattttcggacaaatacaacggtctcaggcaaaaatcatagggtgaaaa
atttatgaaaattttagcttgagaaaacggagacctg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051390-exon-scaffold_201-1491911889:562619..562833 | TCONS_00051390-exon-scaffold_201-1491911889:562619..562833 | Clytia hemisphaerica | exon |
| TCONS_00051390-exon-scaffold_201-1510915933:562619..562833 | TCONS_00051390-exon-scaffold_201-1510915933:562619..562833 | Clytia hemisphaerica | exon |
| TCONS_00051390-exon-scaffold_201-1575043694:562619..562833 | TCONS_00051390-exon-scaffold_201-1575043694:562619..562833 | Clytia hemisphaerica | exon |
| TCONS_00051390-exon-scaffold_201-1491911889:566036..566164 | TCONS_00051390-exon-scaffold_201-1491911889:566036..566164 | Clytia hemisphaerica | exon |
| TCONS_00051390-exon-scaffold_201-1510915933:566036..566164 | TCONS_00051390-exon-scaffold_201-1510915933:566036..566164 | Clytia hemisphaerica | exon |
| TCONS_00051390-exon-scaffold_201-1575043694:566036..566164 | TCONS_00051390-exon-scaffold_201-1575043694:566036..566164 | Clytia hemisphaerica | exon |
| TCONS_00051390-exon-scaffold_201-1491911889:566866..566983 | TCONS_00051390-exon-scaffold_201-1491911889:566866..566983 | Clytia hemisphaerica | exon |
| TCONS_00051390-exon-scaffold_201-1510915933:566866..566983 | TCONS_00051390-exon-scaffold_201-1510915933:566866..566983 | Clytia hemisphaerica | exon |
| TCONS_00051390-exon-scaffold_201-1575043694:566866..566983 | TCONS_00051390-exon-scaffold_201-1575043694:566866..566983 | Clytia hemisphaerica | exon |
| TCONS_00051390-exon-scaffold_201-1491911889:567544..567905 | TCONS_00051390-exon-scaffold_201-1491911889:567544..567905 | Clytia hemisphaerica | exon |
| TCONS_00051390-exon-scaffold_201-1510915933:567544..567905 | TCONS_00051390-exon-scaffold_201-1510915933:567544..567905 | Clytia hemisphaerica | exon |
| TCONS_00051390-exon-scaffold_201-1575043694:567544..567905 | TCONS_00051390-exon-scaffold_201-1575043694:567544..567905 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_201 | supercontig | scaffold_201:562619..567905 + |
Blast
BLAST of TCONS_00051390 vs. Swiss-Prot (Human)
Match: RUXF (Small nuclear ribonucleoprotein F OS=Homo sapiens GN=SNRPF PE=1 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 1.537e-32 Identity = 53/64 (82.81%), Postives = 60/64 (93.75%), Query Frame = 3
Query: 219 QLPLNPKPFLNGLTGKAVMVKLKWGMEYKGYLVSVDNYMNMQIANSEEFIDGQMTGNLGEILIR 410
LPLNPKPFLNGLTGK VMVKLKWGMEYKGYLVSVD YMNMQ+AN+EE+IDG ++G+LGE+LIR
Sbjct: 2 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIR 65
The following BLAST results are available for this feature:
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